Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38579 * 119.82903 * 2 1 4 4 C 1.38014 * 120.42256 * 179.72358 * 3 2 1 5 5 C 1.38899 * 120.06871 * 0.55895 * 4 3 2 6 6 N 1.39082 * 120.17299 * 179.74444 * 5 4 3 7 7 C 1.34774 * 120.00317 * 35.24303 * 6 5 4 8 8 O 1.21364 * 119.99368 * 355.54158 * 7 6 5 9 9 C 1.49355 * 120.00223 * 175.26934 * 7 6 5 10 10 O 1.21354 * 120.00345 * 0.27236 * 9 7 6 11 11 N 1.34778 * 119.99918 * 180.27487 * 9 7 6 12 12 C 1.46498 * 119.99940 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47261 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47230 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00232 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00076 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00043 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00322 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47188 * 59.99589 * 18 16 14 20 20 H 1.48498 * 109.47555 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46891 * 299.99751 * 18 16 14 22 22 C 1.40373 * 119.65401 * 359.47094 * 5 4 3 23 23 C 1.47384 * 120.20574 * 180.27361 * 22 5 4 24 24 O 1.21508 * 120.00179 * 5.37104 * 23 22 5 25 25 O 1.34753 * 119.99896 * 185.37272 * 23 22 5 26 26 C 1.37793 * 119.82817 * 180.02562 * 2 1 3 27 27 H 1.09009 * 109.46920 * 269.97139 * 1 2 3 28 28 H 1.08997 * 109.47331 * 29.96558 * 1 2 3 29 29 H 1.08996 * 109.47532 * 149.97896 * 1 2 3 30 30 H 1.08001 * 119.78946 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96920 * 180.30181 * 4 3 2 32 32 H 0.96999 * 119.99792 * 215.24477 * 6 5 4 33 33 H 0.96997 * 120.00058 * 359.97438 * 11 9 7 34 34 H 1.08997 * 109.47426 * 299.99986 * 12 11 9 35 35 H 1.09003 * 109.47166 * 60.00094 * 12 11 9 36 36 H 1.08997 * 109.47045 * 300.00410 * 13 12 11 37 37 H 1.09003 * 109.46798 * 60.00059 * 13 12 11 38 38 H 0.96997 * 120.00129 * 180.02562 * 17 16 14 39 39 H 0.96696 * 117.00386 * 180.02562 * 25 23 22 40 40 H 1.08007 * 120.03937 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1963 1.2022 0.0000 4 6 3.5763 1.2165 0.0057 5 6 4.2847 0.0217 -0.0002 6 7 5.6755 0.0337 0.0003 7 6 6.3410 0.9892 0.6788 8 8 5.7291 1.8854 1.2220 9 6 7.8312 0.9417 0.7673 10 8 8.4431 0.0455 0.2241 11 7 8.4964 1.8942 1.4505 12 6 9.9580 1.8474 1.5378 13 6 10.4580 3.0352 2.3624 14 6 11.9616 2.9874 2.4516 15 1 12.5061 2.1893 1.9689 16 6 12.6421 3.9618 3.1505 17 7 11.9790 4.9334 3.7388 18 14 14.5058 3.9022 3.2618 19 1 15.0856 3.9689 1.8963 20 1 14.9910 5.0544 4.0630 21 1 14.9223 2.6352 3.9150 22 6 3.5896 -1.1978 -0.0007 23 6 4.3290 -2.4727 -0.0008 24 8 5.5401 -2.4727 0.0980 25 8 3.6620 -3.6384 -0.1106 26 6 2.1923 -1.1954 -0.0005 27 1 -0.3633 -0.0005 1.0278 28 1 -0.3634 0.8903 -0.5133 29 1 -0.3634 -0.8897 -0.5141 30 1 1.6500 2.1339 0.0004 31 1 4.1061 2.1576 0.0106 32 1 6.1664 -0.6458 -0.4879 33 1 8.0073 2.6108 1.8844 34 1 10.2638 0.9175 2.0172 35 1 10.3836 1.8965 0.5355 36 1 10.1523 3.9649 1.8826 37 1 10.0324 2.9865 3.3647 38 1 12.4578 5.6191 4.2301 39 1 4.1899 -4.4485 -0.1056 40 1 1.6501 -2.1295 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600442317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = -162.186553 kcal Electronic energy + Delta-G solvation = -25644.182587 eV Core-core repulsion = 21615.826352 eV Total energy + Delta-G solvation = -4028.356235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.49734 -41.36977 -40.26792 -39.36215 -37.42924 -36.94885 -36.12693 -34.85178 -32.84843 -32.45046 -31.73365 -28.29255 -27.08245 -25.93995 -25.07628 -23.74621 -22.83935 -21.76867 -21.48191 -19.86508 -19.16547 -18.76931 -18.54250 -17.87867 -17.57460 -17.35198 -16.77772 -16.59525 -16.46042 -16.17138 -15.64688 -15.40399 -15.31457 -14.87744 -14.70577 -14.50993 -14.31998 -14.29901 -13.37132 -13.29831 -13.19940 -13.04856 -12.94824 -12.80181 -12.65402 -12.56536 -12.33556 -12.29917 -11.82846 -11.71064 -11.48134 -11.32152 -10.81728 -10.62523 -10.28362 -10.18320 -9.28088 -8.24460 -6.35743 -0.58809 -0.03565 0.40429 1.11432 1.41422 1.42605 1.44836 1.52917 1.93130 1.94431 2.36295 2.49955 2.62571 3.10346 3.24101 3.60248 3.87870 3.94722 4.14726 4.18348 4.34855 4.41591 4.42705 4.64855 4.77830 4.90955 4.93242 4.95296 4.99555 5.00602 5.19249 5.31743 5.39904 5.47421 5.50688 5.52714 5.70991 5.77227 5.82839 6.10829 6.19685 6.49822 6.74310 6.80529 6.86865 7.33618 8.87362 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024355 B = 0.002318 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.381963 B =12078.112524 C =13040.636408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.056 4.056 4 C -0.144 4.144 5 C 0.174 3.826 6 N -0.632 5.632 7 C 0.517 3.483 8 O -0.509 6.509 9 C 0.503 3.497 10 O -0.543 6.543 11 N -0.682 5.682 12 C 0.137 3.863 13 C 0.020 3.980 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.166 4.166 23 C 0.531 3.469 24 O -0.546 6.546 25 O -0.496 6.496 26 C -0.037 4.037 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.138 0.862 32 H 0.430 0.570 33 H 0.417 0.583 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.435 0.565 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.446 -13.306 -9.687 32.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.075 4.075 4 C -0.164 4.164 5 C 0.079 3.921 6 N -0.281 5.281 7 C 0.299 3.701 8 O -0.384 6.384 9 C 0.283 3.717 10 O -0.421 6.421 11 N -0.334 5.334 12 C 0.014 3.986 13 C -0.018 4.018 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.170 4.170 23 C 0.377 3.623 24 O -0.438 6.438 25 O -0.310 6.310 26 C -0.055 4.055 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.179 0.821 31 H 0.156 0.844 32 H 0.273 0.727 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.297 0.703 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -27.234 -12.827 -9.542 31.580 hybrid contribution 1.826 -0.277 0.293 1.870 sum -25.407 -13.105 -9.250 30.047 Atomic orbital electron populations 1.20864 0.87719 1.04520 1.03634 1.20310 0.98479 0.91846 1.00180 1.21581 0.92350 0.99859 0.93677 1.21369 0.95526 0.96756 1.02746 1.17957 0.81684 0.93928 0.98562 1.43287 1.05482 1.30556 1.48774 1.20172 0.88492 0.82326 0.79094 1.90740 1.69031 1.33956 1.44697 1.19985 0.88039 0.83061 0.80656 1.90758 1.69546 1.35315 1.46507 1.46019 1.08986 1.27311 1.51074 1.21536 0.76258 1.00131 1.00646 1.19171 0.95810 0.92361 0.94431 1.21411 0.92437 1.10908 1.33720 0.91760 1.25917 1.03944 0.94785 0.94729 1.70066 1.37838 1.13993 1.34775 0.85453 0.78917 0.77831 0.78571 1.19166 1.20757 1.19283 1.18963 0.95010 0.88125 1.14895 1.20800 0.84902 0.85090 0.71466 1.90878 1.16698 1.88181 1.48053 1.84480 1.45012 1.17011 1.84481 1.21468 0.90325 1.00273 0.93432 0.90014 0.89965 0.89855 0.82099 0.84394 0.72714 0.74661 0.92109 0.91777 0.97140 0.97348 0.92520 0.70264 0.81577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.00 71.23 0.71 0.16 16 2 C -0.11 -1.24 5.87 -19.89 -0.12 -1.36 16 3 C -0.06 -0.80 9.68 22.30 0.22 -0.59 16 4 C -0.14 -3.10 8.68 22.37 0.19 -2.91 16 5 C 0.17 4.27 6.30 38.67 0.24 4.52 16 6 N -0.63 -18.28 4.53 -304.25 -1.38 -19.66 16 7 C 0.52 16.83 7.72 87.24 0.67 17.50 16 8 O -0.51 -16.99 13.91 -3.29 -0.05 -17.04 16 9 C 0.50 18.55 7.89 87.24 0.69 19.24 16 10 O -0.54 -22.39 16.48 -3.26 -0.05 -22.44 16 11 N -0.68 -25.79 5.55 -464.51 -2.58 -28.37 16 12 C 0.14 5.90 5.61 86.38 0.48 6.38 16 13 C 0.02 1.01 5.09 29.85 0.15 1.16 16 14 C -0.55 -30.47 9.11 25.60 0.23 -30.24 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 16 C 0.01 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 18 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 C -0.17 -3.35 5.89 -19.99 -0.12 -3.47 16 23 C 0.53 10.95 8.24 70.23 0.58 11.53 16 24 O -0.55 -15.27 14.78 19.81 0.29 -14.98 16 25 O -0.50 -5.98 12.69 -56.64 -0.72 -6.70 16 26 C -0.04 -0.49 9.25 22.52 0.21 -0.29 16 27 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 29 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 30 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.14 3.33 6.23 -2.91 -0.02 3.31 16 32 H 0.43 12.86 6.07 -92.71 -0.56 12.30 16 33 H 0.42 14.79 7.94 -92.71 -0.74 14.06 16 34 H 0.06 2.66 8.14 -2.39 -0.02 2.65 16 35 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.43 1.70 9.11 -74.06 -0.67 1.03 16 40 H 0.17 1.39 7.62 -2.91 -0.02 1.37 16 Total: -1.00 -72.96 354.83 1.60 -71.36 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.85 Total: 24.42 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 4.61 Total: 22.38 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -3.67 Total: -102.75 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -0.53 Total: -61.16 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.96 1.60 -71.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600442317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.829 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds