Wall clock time and date at job start Tue Mar 31 2020 13:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46990 * 2 1 4 4 C 1.50696 * 109.47484 * 240.00087 * 2 1 3 5 5 H 1.07999 * 119.99963 * 240.00444 * 4 2 1 6 6 C 1.37882 * 120.00052 * 59.99597 * 4 2 1 7 7 N 1.31525 * 119.99582 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00250 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46976 * 60.00234 * 8 6 4 10 10 H 1.48500 * 109.47041 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47091 * 300.00636 * 8 6 4 12 12 N 1.46506 * 109.47029 * 120.00033 * 2 1 3 13 13 C 1.34780 * 119.99657 * 275.00266 * 12 2 1 14 14 O 1.21588 * 120.00351 * 359.97438 * 13 12 2 15 15 N 1.34771 * 119.99502 * 180.02562 * 13 12 2 16 16 C 1.39866 * 119.99934 * 175.37067 * 15 13 12 17 17 C 1.38713 * 120.10787 * 34.98814 * 16 15 13 18 18 C 1.38142 * 120.07237 * 179.70476 * 17 16 15 19 19 C 1.38586 * 120.28748 * 0.59202 * 18 17 16 20 20 F 1.35099 * 119.89591 * 179.70368 * 19 18 17 21 21 C 1.38215 * 120.21308 * 359.67968 * 19 18 17 22 22 C 1.39256 * 119.92430 * 0.02860 * 21 19 18 23 23 C 1.48382 * 120.14518 * 179.97438 * 22 21 19 24 24 N 1.34071 * 126.67846 * 179.70107 * 23 22 21 25 25 N 1.28985 * 107.26177 * 179.86719 * 24 23 22 26 26 N 1.28731 * 108.95262 * 0.40499 * 25 24 23 27 27 H 0.97002 * 125.33183 * 179.77875 * 26 25 24 28 28 N 1.28866 * 109.32357 * 359.73916 * 26 25 24 29 29 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47086 * 59.99918 * 1 2 3 31 31 H 1.09003 * 109.47320 * 300.00029 * 1 2 3 32 32 H 0.96999 * 119.99449 * 179.97438 * 7 6 4 33 33 H 0.96993 * 119.99811 * 94.99998 * 12 2 1 34 34 H 0.97003 * 120.00401 * 355.36734 * 15 13 12 35 35 H 1.07999 * 119.96392 * 359.97438 * 17 16 15 36 36 H 1.07995 * 119.85502 * 180.27773 * 18 17 16 37 37 H 1.07994 * 120.03986 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8259 -2.5201 -4.0077 10 1 1.8270 -0.4198 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1616 2.4117 15 7 2.5967 -0.6535 3.4575 16 6 2.8223 0.0645 4.6364 17 6 1.9987 1.1293 4.9710 18 6 2.2185 1.8341 6.1386 19 6 3.2685 1.4905 6.9753 20 9 3.4799 2.1890 8.1123 21 6 4.0999 0.4352 6.6506 22 6 3.8827 -0.2852 5.4788 23 6 4.7726 -1.4187 5.1252 24 7 4.6811 -2.2002 4.0397 25 7 5.6404 -3.0600 4.1051 26 7 6.3145 -2.8531 5.1821 27 1 7.0864 -3.3663 5.4680 28 7 5.8036 -1.8569 5.8202 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 0.7094 1.1618 -3.4844 33 1 2.2490 -1.6317 1.1526 34 1 2.7638 -1.6086 3.4318 35 1 1.1821 1.4049 4.3202 36 1 1.5724 2.6597 6.3980 37 1 4.9175 0.1701 7.3045 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:49 Heat of formation + Delta-G solvation = 63.088304 kcal Electronic energy + Delta-G solvation = -26118.067382 eV Core-core repulsion = 22040.604995 eV Total energy + Delta-G solvation = -4077.462387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.84301 -45.53334 -41.68360 -39.75030 -36.86988 -35.87703 -35.19481 -34.69440 -34.28529 -31.80184 -31.22802 -29.51868 -27.29409 -26.11957 -25.58413 -24.27119 -23.06968 -22.54728 -21.55240 -20.39934 -19.80472 -18.78137 -18.49994 -18.19701 -17.89499 -17.19088 -16.91558 -16.56985 -16.30498 -15.96802 -15.76672 -15.36794 -15.08272 -14.80571 -14.40344 -14.26857 -13.99173 -13.79280 -13.67292 -13.34509 -12.97333 -12.85060 -12.70139 -12.50212 -12.47550 -12.25851 -12.21910 -12.11920 -11.97616 -11.35718 -11.07712 -11.01361 -10.56373 -9.99318 -9.81374 -9.00980 -8.14760 -6.31248 -0.50072 0.08103 0.11399 1.16078 1.36295 1.46759 1.48981 1.56301 1.72130 2.12494 2.43848 2.48189 2.62292 2.95700 3.15703 3.35378 3.42389 3.79025 3.86150 4.07590 4.21720 4.27602 4.47529 4.75801 4.79632 4.94977 4.98754 5.10668 5.13570 5.17367 5.41353 5.45076 5.58504 5.62540 5.68620 5.82615 5.88225 6.13152 6.24132 6.75531 7.04216 7.20724 7.36467 7.65881 8.91428 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.003566 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.817434 B = 7851.017325 C = 9514.604215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.712 5.712 13 C 0.696 3.304 14 O -0.617 6.617 15 N -0.671 5.671 16 C 0.194 3.806 17 C -0.111 4.111 18 C -0.100 4.100 19 C 0.074 3.926 20 F -0.136 7.136 21 C -0.084 4.084 22 C -0.035 4.035 23 C 0.213 3.787 24 N -0.302 5.302 25 N -0.048 5.048 26 N -0.194 5.194 27 H 0.496 0.504 28 N -0.283 5.283 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.422 0.578 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 -7.347 20.639 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.364 5.364 13 C 0.397 3.603 14 O -0.498 6.498 15 N -0.321 5.321 16 C 0.094 3.906 17 C -0.132 4.132 18 C -0.120 4.120 19 C 0.053 3.947 20 F -0.114 7.114 21 C -0.105 4.105 22 C -0.042 4.042 23 C -0.066 4.066 24 N -0.174 5.174 25 N -0.043 5.043 26 N -0.045 5.045 27 H 0.356 0.644 28 N -0.135 5.135 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.263 0.737 35 H 0.159 0.841 36 H 0.183 0.817 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.901 -6.736 20.049 22.946 hybrid contribution 0.681 -0.796 -0.506 1.163 sum 9.582 -7.532 19.543 23.032 Atomic orbital electron populations 1.21916 0.98053 0.99486 0.99814 1.18291 0.91106 0.91706 0.80382 0.97906 1.21498 1.32677 1.13627 0.90808 0.91120 1.25738 0.94871 0.95586 1.02082 1.70043 1.36868 1.23759 1.24657 0.85420 0.78533 0.78769 0.77738 1.18898 1.21061 1.19844 1.45494 1.68481 1.14018 1.08366 1.16170 0.78356 0.84876 0.80930 1.90835 1.58191 1.15845 1.84931 1.42761 1.68491 1.12706 1.08148 1.17671 0.92991 0.94215 0.85690 1.21159 0.99983 0.95494 0.96521 1.21393 0.97236 1.00642 0.92689 1.17322 0.98118 0.94080 0.85142 1.91511 1.94561 1.77658 1.47705 1.20939 1.00118 0.93660 0.95781 1.16700 0.93598 0.95983 0.97900 1.23390 0.94909 0.98313 0.90037 1.75850 1.16410 1.04528 1.20600 1.78900 1.01283 1.18065 1.06052 1.47781 1.24554 1.20160 1.12050 0.64397 1.74874 1.11367 1.04060 1.23236 0.94208 0.91327 0.96473 0.92515 0.76353 0.73689 0.84059 0.81744 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.29 15.05 2.56 44.24 0.11 15.16 16 3 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 4 C -0.55 -29.23 8.73 25.60 0.22 -29.00 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 8 Si 0.97 42.19 29.54 68.60 2.03 44.21 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 N -0.71 -30.51 5.07 -461.41 -2.34 -32.85 16 13 C 0.70 28.88 8.37 179.05 1.50 30.38 16 14 O -0.62 -29.71 13.43 -3.99 -0.05 -29.77 16 15 N -0.67 -21.87 4.75 -316.58 -1.50 -23.38 16 16 C 0.19 5.74 6.31 38.37 0.24 5.98 16 17 C -0.11 -3.19 8.69 22.36 0.19 -3.00 16 18 C -0.10 -2.23 10.01 22.33 0.22 -2.01 16 19 C 0.07 1.55 7.29 22.35 0.16 1.72 16 20 F -0.14 -2.79 17.26 44.97 0.78 -2.01 16 21 C -0.08 -1.72 9.67 22.51 0.22 -1.50 16 22 C -0.04 -0.87 5.89 -19.93 -0.12 -0.99 16 23 C 0.21 5.08 7.88 137.34 1.08 6.16 16 24 N -0.30 -7.74 9.81 -52.22 -0.51 -8.25 16 25 N -0.05 -0.99 13.47 37.02 0.50 -0.49 16 26 N -0.19 -2.60 7.90 37.02 0.29 -2.31 16 27 H 0.50 1.39 8.96 -347.53 -3.12 -1.73 16 28 N -0.28 -5.16 12.08 -52.16 -0.63 -5.79 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.40 14.98 8.56 -92.71 -0.79 14.19 16 34 H 0.42 12.29 6.50 -92.71 -0.60 11.69 16 35 H 0.14 4.74 6.21 -2.91 -0.02 4.72 16 36 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.17 2.67 7.88 -2.91 -0.02 2.64 16 Total: -1.00 -69.54 328.06 0.43 -69.11 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -3.32 Total: 25.34 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 4.96 Total: 18.22 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -3.95 Total: -125.11 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.54 0.43 -69.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.196 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds