Wall clock time and date at job start Tue Mar 31 2020 13:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47267 * 2 1 4 4 C 1.50704 * 109.47097 * 119.99842 * 2 1 3 5 5 H 1.08002 * 120.00138 * 119.99814 * 4 2 1 6 6 C 1.37878 * 120.00399 * 300.00265 * 4 2 1 7 7 N 1.31522 * 119.99112 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00470 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47184 * 89.99838 * 8 6 4 10 10 H 1.48503 * 109.47453 * 209.99845 * 8 6 4 11 11 H 1.48502 * 109.47339 * 329.99895 * 8 6 4 12 12 N 1.46502 * 109.47172 * 239.99776 * 2 1 3 13 13 C 1.34776 * 119.99821 * 85.00217 * 12 2 1 14 14 O 1.21593 * 119.99962 * 0.02562 * 13 12 2 15 15 N 1.34783 * 119.99791 * 179.97438 * 13 12 2 16 16 C 1.40088 * 119.99574 * 185.63314 * 15 13 12 17 17 C 1.38596 * 120.02056 * 24.79487 * 16 15 13 18 18 C 1.39233 * 119.83019 * 180.02562 * 17 16 15 19 19 C 1.48460 * 120.05812 * 180.02562 * 18 17 16 20 20 N 1.34057 * 126.67251 * 359.68917 * 19 18 17 21 21 N 1.28978 * 107.26429 * 179.83591 * 20 19 18 22 22 N 1.28730 * 108.94870 * 0.42767 * 21 20 19 23 23 H 0.97003 * 125.34761 * 179.72742 * 22 21 20 24 24 N 1.28877 * 109.31405 * 359.73094 * 22 21 20 25 25 C 1.39333 * 119.87989 * 0.02562 * 18 17 16 26 26 C 1.38053 * 120.03382 * 359.97438 * 25 18 17 27 27 C 1.38386 * 120.16769 * 359.97438 * 26 25 18 28 28 F 1.35099 * 119.93628 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.46796 * 60.00284 * 1 2 3 30 30 H 1.09006 * 109.46980 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46837 * 300.00205 * 1 2 3 32 32 H 0.97002 * 119.99166 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99886 * 265.00198 * 12 2 1 34 34 H 0.96997 * 119.99788 * 5.63614 * 15 13 12 35 35 H 1.07995 * 120.08160 * 359.97438 * 17 16 15 36 36 H 1.07995 * 119.98112 * 180.25552 * 25 18 17 37 37 H 1.08005 * 119.91399 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9492 5.1121 11 1 2.4858 -2.5662 3.7121 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5969 -0.6536 -3.4575 16 6 2.8430 0.0691 -4.6320 17 6 3.1300 1.4234 -4.5656 18 6 3.3734 2.1380 -5.7355 19 6 3.6818 3.5888 -5.6701 20 7 3.7545 4.3428 -4.5642 21 7 4.0480 5.5421 -4.9372 22 7 4.1512 5.5674 -6.2201 23 1 4.3611 6.3517 -6.7508 24 7 3.9319 4.3871 -6.6887 25 6 3.3271 1.4891 -6.9676 26 6 3.0408 0.1399 -7.0276 27 6 2.7996 -0.5722 -5.8658 28 9 2.5193 -1.8922 -5.9300 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.7089 1.1614 3.4844 33 1 2.2491 -1.6319 -1.1525 34 1 2.7501 -1.6112 -3.4360 35 1 3.1638 1.9233 -3.6089 36 1 3.5197 2.0409 -7.8757 37 1 3.0049 -0.3611 -7.9838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603442975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:03 Heat of formation + Delta-G solvation = 83.088492 kcal Electronic energy + Delta-G solvation = -25815.042306 eV Core-core repulsion = 21738.447192 eV Total energy + Delta-G solvation = -4076.595114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.99534 -44.51990 -40.26628 -38.53102 -35.36908 -34.55642 -34.27490 -33.34242 -32.45493 -30.55063 -29.83315 -28.23666 -25.25513 -24.83455 -24.56231 -23.27719 -21.93864 -21.01665 -19.92086 -19.41472 -18.34481 -17.85442 -17.21354 -17.20252 -16.37700 -15.96692 -15.64041 -15.39068 -14.82606 -14.67071 -14.28024 -14.05376 -13.77599 -13.40928 -13.08704 -12.95187 -12.78280 -12.40986 -12.17753 -11.82658 -11.66837 -11.42174 -11.18109 -11.14586 -11.06248 -10.94852 -10.76464 -10.35339 -10.24078 -10.21744 -9.44902 -9.05748 -8.73493 -8.56693 -8.18227 -7.81099 -6.12380 -4.21720 0.49660 1.09860 1.18686 2.12660 2.19311 2.95826 3.25672 3.32484 3.34220 3.45805 3.58036 3.87021 4.07844 4.11480 4.32513 4.65740 4.83638 4.95812 5.13263 5.20219 5.21548 5.40662 5.49421 5.76332 5.96213 6.10940 6.25324 6.32662 6.44544 6.77181 6.93219 6.97335 7.05908 7.17799 7.42034 7.61363 7.79992 7.95673 8.08793 8.14564 8.68165 8.80406 9.14841 9.45847 10.93667 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013627 B = 0.003314 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.253074 B = 8447.260256 C =10069.658080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.280 3.720 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.714 5.714 13 C 0.692 3.308 14 O -0.572 6.572 15 N -0.689 5.689 16 C 0.158 3.842 17 C -0.066 4.066 18 C -0.009 4.009 19 C 0.225 3.775 20 N -0.252 5.252 21 N -0.049 5.049 22 N -0.232 5.232 23 H 0.474 0.526 24 N -0.297 5.297 25 C -0.084 4.084 26 C -0.133 4.133 27 C 0.073 3.927 28 F -0.136 7.136 29 H 0.016 0.984 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.408 0.592 35 H 0.176 0.824 36 H 0.140 0.860 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 1.871 -21.076 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.365 5.365 13 C 0.392 3.608 14 O -0.450 6.450 15 N -0.336 5.336 16 C 0.059 3.941 17 C -0.089 4.089 18 C -0.013 4.013 19 C -0.055 4.055 20 N -0.125 5.125 21 N -0.044 5.044 22 N -0.077 5.077 23 H 0.328 0.672 24 N -0.149 5.149 25 C -0.106 4.106 26 C -0.152 4.152 27 C 0.049 3.951 28 F -0.115 7.115 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.243 0.757 35 H 0.194 0.806 36 H 0.158 0.842 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.960 3.598 -20.457 21.609 hybrid contribution 0.414 -1.539 0.276 1.617 sum 6.374 2.060 -20.181 21.264 Atomic orbital electron populations 1.22111 0.98450 0.99140 1.01044 1.18742 0.90923 0.93868 0.78665 0.92974 1.21191 1.32619 1.13344 0.90197 0.92038 1.24875 0.94781 0.94970 0.99026 1.69910 1.35676 1.22357 1.23951 0.86426 0.78614 0.79781 0.82132 1.20529 1.21075 1.19878 1.45910 1.68147 1.13500 1.08904 1.16162 0.78695 0.85602 0.80341 1.90881 1.56249 1.14034 1.83796 1.42799 1.69486 1.11590 1.09713 1.17368 1.00110 0.92184 0.84473 1.21558 0.94992 0.91898 1.00472 1.17069 1.04528 0.85645 0.94072 1.23545 1.01052 0.96337 0.84548 1.76282 1.15761 0.95703 1.24747 1.78993 1.14068 1.16394 0.94956 1.47736 1.44663 1.09601 1.05728 0.67230 1.74856 1.21253 0.92177 1.26656 1.20856 0.99342 0.93477 0.96916 1.20765 1.03156 0.94248 0.97067 1.17520 1.06054 0.78594 0.92901 1.91480 1.91381 1.31539 1.97068 0.96510 0.95490 0.89023 0.92515 0.78007 0.75667 0.80646 0.84201 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.03 2.56 -69.08 -0.18 6.86 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.71 -14.58 5.07 -59.81 -0.30 -14.88 16 13 C 0.69 13.76 8.33 -86.91 -0.72 13.04 16 14 O -0.57 -13.44 13.17 5.28 0.07 -13.37 16 15 N -0.69 -10.61 5.32 -14.19 -0.08 -10.68 16 16 C 0.16 2.33 6.43 -83.62 -0.54 1.79 16 17 C -0.07 -1.05 8.37 -39.08 -0.33 -1.38 16 18 C -0.01 -0.12 5.87 -104.91 -0.62 -0.74 16 19 C 0.22 3.12 7.93 -156.30 -1.24 1.88 16 20 N -0.25 -3.98 12.23 32.16 0.39 -3.59 16 21 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 22 N -0.23 -2.06 7.90 60.35 0.48 -1.59 16 23 H 0.47 1.67 8.96 -340.36 -3.05 -1.38 16 24 N -0.30 -3.28 12.08 32.17 0.39 -2.89 16 25 C -0.08 -0.88 9.69 -39.24 -0.38 -1.26 16 26 C -0.13 -1.32 10.00 -39.59 -0.40 -1.72 16 27 C 0.07 0.89 7.31 -39.20 -0.29 0.61 16 28 F -0.14 -1.64 16.80 2.25 0.04 -1.60 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 6.73 8.56 -40.82 -0.35 6.38 16 34 H 0.41 5.04 8.46 -40.82 -0.35 4.69 16 35 H 0.18 3.37 5.60 -52.49 -0.29 3.07 16 36 H 0.14 1.14 7.88 -52.49 -0.41 0.73 16 37 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -32.91 331.51 -8.31 -41.22 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.97 Total: 7.67 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -4.74 Total: 3.11 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 2.32 Total: -57.53 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.91 -8.31 -41.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.307 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds