Wall clock time and date at job start Tue Mar 31 2020 13:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47267 * 2 1 4 4 C 1.50704 * 109.47097 * 119.99842 * 2 1 3 5 5 H 1.08002 * 120.00138 * 119.99814 * 4 2 1 6 6 C 1.37878 * 120.00399 * 300.00265 * 4 2 1 7 7 N 1.31522 * 119.99112 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00470 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47184 * 89.99838 * 8 6 4 10 10 H 1.48503 * 109.47453 * 209.99845 * 8 6 4 11 11 H 1.48502 * 109.47339 * 329.99895 * 8 6 4 12 12 N 1.46502 * 109.47172 * 239.99776 * 2 1 3 13 13 C 1.34776 * 119.99821 * 85.00217 * 12 2 1 14 14 O 1.21593 * 119.99962 * 0.02562 * 13 12 2 15 15 N 1.34783 * 119.99791 * 179.97438 * 13 12 2 16 16 C 1.40088 * 119.99574 * 185.63314 * 15 13 12 17 17 C 1.38596 * 120.02056 * 24.79487 * 16 15 13 18 18 C 1.39233 * 119.83019 * 180.02562 * 17 16 15 19 19 C 1.48460 * 120.05812 * 180.02562 * 18 17 16 20 20 N 1.34057 * 126.67251 * 359.68917 * 19 18 17 21 21 N 1.28978 * 107.26429 * 179.83591 * 20 19 18 22 22 N 1.28730 * 108.94870 * 0.42767 * 21 20 19 23 23 H 0.97003 * 125.34761 * 179.72742 * 22 21 20 24 24 N 1.28877 * 109.31405 * 359.73094 * 22 21 20 25 25 C 1.39333 * 119.87989 * 0.02562 * 18 17 16 26 26 C 1.38053 * 120.03382 * 359.97438 * 25 18 17 27 27 C 1.38386 * 120.16769 * 359.97438 * 26 25 18 28 28 F 1.35099 * 119.93628 * 179.97438 * 27 26 25 29 29 H 1.08999 * 109.46796 * 60.00284 * 1 2 3 30 30 H 1.09006 * 109.46980 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46837 * 300.00205 * 1 2 3 32 32 H 0.97002 * 119.99166 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99886 * 265.00198 * 12 2 1 34 34 H 0.96997 * 119.99788 * 5.63614 * 15 13 12 35 35 H 1.07995 * 120.08160 * 359.97438 * 17 16 15 36 36 H 1.07995 * 119.98112 * 180.25552 * 25 18 17 37 37 H 1.08005 * 119.91399 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3431 -0.9492 5.1121 11 1 2.4858 -2.5662 3.7121 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8584 1.1616 -2.4116 15 7 2.5969 -0.6536 -3.4575 16 6 2.8430 0.0691 -4.6320 17 6 3.1300 1.4234 -4.5656 18 6 3.3734 2.1380 -5.7355 19 6 3.6818 3.5888 -5.6701 20 7 3.7545 4.3428 -4.5642 21 7 4.0480 5.5421 -4.9372 22 7 4.1512 5.5674 -6.2201 23 1 4.3611 6.3517 -6.7508 24 7 3.9319 4.3871 -6.6887 25 6 3.3271 1.4891 -6.9676 26 6 3.0408 0.1399 -7.0276 27 6 2.7996 -0.5722 -5.8658 28 9 2.5193 -1.8922 -5.9300 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.7089 1.1614 3.4844 33 1 2.2491 -1.6319 -1.1525 34 1 2.7501 -1.6112 -3.4360 35 1 3.1638 1.9233 -3.6089 36 1 3.5197 2.0409 -7.8757 37 1 3.0049 -0.3611 -7.9838 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603442975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:03 Heat of formation + Delta-G solvation = 58.402802 kcal Electronic energy + Delta-G solvation = -25816.112758 eV Core-core repulsion = 21738.447192 eV Total energy + Delta-G solvation = -4077.665566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.96059 -45.48133 -41.64703 -39.75719 -37.02290 -35.98501 -35.36070 -34.48004 -34.22024 -31.67787 -31.20781 -29.77609 -27.32573 -25.82210 -25.58322 -24.50185 -23.20742 -22.39004 -21.59793 -20.41959 -19.80762 -19.04444 -18.28787 -18.16033 -17.93251 -17.24216 -17.03723 -16.70549 -16.35793 -16.05789 -15.60716 -15.26112 -15.15837 -14.75359 -14.41060 -14.19419 -14.00843 -13.77947 -13.69201 -13.12899 -12.96427 -12.91850 -12.77854 -12.67390 -12.43368 -12.26998 -12.17215 -12.16362 -12.07244 -11.41175 -11.09801 -11.04326 -10.59695 -9.88987 -9.72661 -9.07314 -8.16382 -6.33693 -0.48129 0.12357 0.18554 1.16034 1.40550 1.46247 1.47266 1.56952 1.63517 2.11001 2.42622 2.59914 2.65516 3.07669 3.12725 3.14586 3.38046 3.75591 4.00470 4.12948 4.24382 4.42853 4.46104 4.73737 4.83957 4.93873 5.01548 5.08440 5.10145 5.30800 5.34471 5.39569 5.59516 5.62834 5.64143 5.82019 5.83270 6.09418 6.17013 6.73527 7.10977 7.14639 7.34289 7.60846 8.90201 Molecular weight = 320.11amu Principal moments of inertia in cm(-1) A = 0.013627 B = 0.003314 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.253074 B = 8447.260256 C =10069.658080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H 0.002 0.998 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.711 5.711 13 C 0.693 3.307 14 O -0.613 6.613 15 N -0.673 5.673 16 C 0.131 3.869 17 C -0.091 4.091 18 C -0.018 4.018 19 C 0.210 3.790 20 N -0.304 5.304 21 N -0.061 5.061 22 N -0.196 5.196 23 H 0.496 0.504 24 N -0.278 5.278 25 C -0.063 4.063 26 C -0.112 4.112 27 C 0.081 3.919 28 F -0.132 7.132 29 H 0.011 0.989 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.423 0.577 35 H 0.134 0.866 36 H 0.173 0.827 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 0.286 -23.853 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.020 0.980 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.363 5.363 13 C 0.393 3.607 14 O -0.493 6.493 15 N -0.322 5.322 16 C 0.033 3.967 17 C -0.114 4.114 18 C -0.022 4.022 19 C -0.070 4.070 20 N -0.176 5.176 21 N -0.056 5.056 22 N -0.047 5.047 23 H 0.355 0.645 24 N -0.131 5.131 25 C -0.084 4.084 26 C -0.131 4.131 27 C 0.058 3.942 28 F -0.110 7.110 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.261 0.739 35 H 0.152 0.848 36 H 0.190 0.810 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.914 1.981 -23.294 24.379 hybrid contribution 0.176 -0.922 0.920 1.314 sum 7.090 1.059 -22.374 23.494 Atomic orbital electron populations 1.21924 0.98325 0.99499 0.99583 1.18290 0.90947 0.91771 0.80492 0.98043 1.21525 1.32696 1.13682 0.90605 0.90704 1.25795 0.94851 0.95599 1.02293 1.70065 1.36881 1.23886 1.24642 0.85318 0.77708 0.79181 0.77953 1.20456 1.20967 1.18296 1.45477 1.68580 1.14111 1.08122 1.16220 0.78410 0.85041 0.81034 1.90875 1.57798 1.16009 1.84618 1.42400 1.68744 1.12175 1.08846 1.17517 1.02104 0.92088 0.84968 1.21212 0.97576 0.92713 0.99870 1.17213 1.04818 0.85644 0.94507 1.23697 1.01857 0.96852 0.84609 1.76276 1.17744 0.96930 1.26609 1.78922 1.14788 1.15626 0.96285 1.47816 1.41894 1.09954 1.05055 0.64455 1.74805 1.20561 0.92287 1.25491 1.21210 0.96963 0.93757 0.96507 1.21230 1.00358 0.93760 0.97754 1.17584 1.05383 0.78758 0.92455 1.91499 1.91288 1.31234 1.96999 0.97013 0.93996 0.91360 0.92527 0.76046 0.73862 0.84827 0.80970 0.79483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.29 15.14 2.56 44.25 0.11 15.26 16 3 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 4 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.76 16 8 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 12 N -0.71 -29.88 5.07 -461.39 -2.34 -32.22 16 13 C 0.69 28.81 8.33 179.05 1.49 30.31 16 14 O -0.61 -30.92 13.17 -4.01 -0.05 -30.97 16 15 N -0.67 -21.02 5.32 -317.06 -1.69 -22.71 16 16 C 0.13 3.86 6.43 38.12 0.25 4.10 16 17 C -0.09 -3.00 8.37 22.59 0.19 -2.81 16 18 C -0.02 -0.47 5.87 -20.05 -0.12 -0.59 16 19 C 0.21 5.78 7.93 137.38 1.09 6.87 16 20 N -0.30 -10.03 12.23 -52.18 -0.64 -10.67 16 21 N -0.06 -1.58 13.47 37.02 0.50 -1.08 16 22 N -0.20 -3.20 7.90 37.02 0.29 -2.91 16 23 H 0.50 2.39 8.96 -347.53 -3.12 -0.72 16 24 N -0.28 -5.63 12.08 -52.13 -0.63 -6.26 16 25 C -0.06 -1.11 9.69 22.49 0.22 -0.89 16 26 C -0.11 -1.75 10.00 22.26 0.22 -1.53 16 27 C 0.08 1.80 7.31 22.52 0.16 1.97 16 28 F -0.13 -2.78 16.80 44.97 0.76 -2.02 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.40 14.03 8.56 -92.71 -0.79 13.23 16 34 H 0.42 10.19 8.46 -92.71 -0.78 9.40 16 35 H 0.13 5.65 5.60 -2.91 -0.02 5.63 16 36 H 0.17 1.95 7.88 -2.91 -0.02 1.93 16 37 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -76.32 331.51 -0.08 -76.40 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -3.50 Total: 22.12 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 4.96 Total: 18.88 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -4.26 Total: -128.61 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.76 Total: -2.02 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -76.32 -0.08 -76.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603442975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.803 kcal (2) G-P(sol) polarization free energy of solvation -76.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds