Wall clock time and date at job start Tue Mar 31 2020 12:34:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.47329 * 2 1
4 4 H 1.09002 * 109.46926 * 54.99048 * 3 2 1
5 5 C 1.50692 * 109.47321 * 174.99872 * 3 2 1
6 6 H 1.07994 * 120.00475 * 119.99688 * 5 3 2
7 7 C 1.37881 * 119.99823 * 299.99604 * 5 3 2
8 8 N 1.31520 * 120.00122 * 0.02562 * 7 5 3
9 9 Si 1.86800 * 120.00160 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.46946 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47205 * 119.99846 * 9 7 5
12 12 H 1.48504 * 109.46896 * 240.00169 * 9 7 5
13 13 N 1.46503 * 109.46696 * 294.99556 * 3 2 1
14 14 C 1.34775 * 120.00083 * 84.99962 * 13 3 2
15 15 O 1.21367 * 120.00069 * 0.02562 * 14 13 3
16 16 C 1.49363 * 120.00241 * 179.97438 * 14 13 3
17 17 O 1.21367 * 119.99689 * 0.02562 * 16 14 13
18 18 N 1.34775 * 120.00241 * 179.97438 * 16 14 13
19 19 C 1.39080 * 119.99939 * 185.27953 * 18 16 14
20 20 C 1.38901 * 120.17629 * 34.94294 * 19 18 16
21 21 C 1.38006 * 120.07059 * 179.97438 * 20 19 18
22 22 C 1.38573 * 120.42316 * 0.02562 * 21 20 19
23 23 C 1.37793 * 120.34704 * 359.97438 * 22 21 20
24 24 C 1.39728 * 119.92058 * 0.02562 * 23 22 21
25 25 C 1.47387 * 120.20827 * 179.97438 * 24 23 22
26 26 O 1.21511 * 120.00461 * 175.03492 * 25 24 23
27 27 O 1.34761 * 119.99999 * 355.04208 * 25 24 23
28 28 H 1.09001 * 109.47397 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47735 * 300.00893 * 1 2 3
30 30 H 1.09001 * 109.46555 * 60.00352 * 1 2 3
31 31 H 1.08989 * 109.47407 * 239.99164 * 2 1 3
32 32 H 1.09001 * 109.46555 * 119.99648 * 2 1 3
33 33 H 0.96995 * 120.00115 * 180.02562 * 8 7 5
34 34 H 0.96994 * 120.00121 * 265.00243 * 13 3 2
35 35 H 0.97001 * 119.99884 * 5.27714 * 18 16 14
36 36 H 1.08001 * 119.96054 * 0.24401 * 20 19 18
37 37 H 1.08002 * 119.78513 * 179.97438 * 21 20 19
38 38 H 1.08000 * 119.82815 * 179.97438 * 22 21 20
39 39 H 1.08002 * 120.03799 * 180.02562 * 23 22 21
40 40 H 0.96695 * 117.00095 * 179.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6053 1.9816 0.8417
5 6 3.5419 1.4443 0.1239
6 1 4.1473 1.8888 -0.6522
7 6 4.1432 0.8784 1.2281
8 7 3.4061 0.3367 2.1730
9 14 6.0049 0.8813 1.3821
10 1 6.5987 1.5461 0.1945
11 1 6.3989 1.6168 2.6105
12 1 6.4969 -0.5175 1.4633
13 7 1.6526 2.0974 -1.2519
14 6 0.4353 2.6643 -1.3672
15 8 -0.3397 2.6327 -0.4337
16 6 0.0404 3.3324 -2.6433
17 8 0.8156 3.3645 -3.5766
18 7 -1.1771 3.8989 -2.7588
19 6 -1.5869 4.4238 -3.9798
20 6 -1.2007 3.8143 -5.1667
21 6 -1.6090 4.3367 -6.3771
22 6 -2.4048 5.4703 -6.4194
23 6 -2.7980 6.0889 -5.2526
24 6 -2.3929 5.5723 -4.0191
25 6 -2.8094 6.2291 -2.7672
26 8 -2.5315 5.7272 -1.6961
27 8 -3.4985 7.3864 -2.8104
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8898
30 1 -0.3632 0.5138 -0.8900
31 1 1.8934 -0.5139 -0.8898
32 1 1.8933 -0.5138 0.8900
33 1 3.8291 -0.0610 2.9500
34 1 2.2721 2.1229 -1.9978
35 1 -1.7675 3.9404 -1.9903
36 1 -0.5838 2.9281 -5.1421
37 1 -1.3057 3.8593 -7.2971
38 1 -2.7185 5.8712 -7.3719
39 1 -3.4186 6.9719 -5.2914
40 1 -3.7501 7.7794 -1.9634
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001603516741.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:57
Heat of formation + Delta-G solvation = -128.406005 kcal
Electronic energy + Delta-G solvation = -26663.870769 eV
Core-core repulsion = 22636.979368 eV
Total energy + Delta-G solvation = -4026.891401 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.29878 -40.15352 -38.98467 -37.95400 -36.47071 -35.46124 -34.68330 -32.41731
-31.71574 -30.99505 -30.07582 -27.29467 -25.36214 -24.50280 -23.25283 -22.46376
-21.44868 -20.27109 -19.47557 -18.56506 -18.37265 -17.77511 -17.21950 -16.46058
-16.07152 -15.86332 -15.56539 -15.31131 -15.02318 -14.76357 -14.39820 -14.18677
-13.92580 -13.42914 -13.31611 -13.02330 -12.75064 -12.39561 -12.08950 -11.93432
-11.83682 -11.60158 -11.34264 -11.20275 -10.98130 -10.95522 -10.87555 -10.48052
-10.34111 -10.26999 -9.70193 -9.40167 -9.13078 -9.06473 -8.56899 -8.46555
-8.02842 -6.17359 -4.26980 0.33603 0.94829 1.85808 2.28349 2.62945
2.71520 3.22869 3.31028 3.34732 3.43440 3.72252 4.05327 4.33089
4.44943 4.64613 4.72475 5.02120 5.05337 5.10985 5.15082 5.27053
5.57629 5.83882 5.91095 6.08456 6.14804 6.23804 6.31724 6.36767
6.55725 6.58291 6.94635 7.00914 7.14456 7.19437 7.27878 7.49714
7.59539 7.64080 7.77927 7.87915 8.08283 8.43808 8.62560 8.86423
9.39786 10.88095
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.020325 B = 0.003012 C = 0.002902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1377.254902 B = 9293.565775 C = 9645.128731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.129 4.129
3 C 0.267 3.733
4 H 0.055 0.945
5 C -0.536 4.536
6 H 0.065 0.935
7 C 0.068 3.932
8 N -0.881 5.881
9 Si 0.904 3.096
10 H -0.272 1.272
11 H -0.282 1.282
12 H -0.282 1.282
13 N -0.668 5.668
14 C 0.494 3.506
15 O -0.521 6.521
16 C 0.508 3.492
17 O -0.504 6.504
18 N -0.645 5.645
19 C 0.223 3.777
20 C -0.138 4.138
21 C -0.058 4.058
22 C -0.155 4.155
23 C -0.041 4.041
24 C -0.166 4.166
25 C 0.529 3.471
26 O -0.508 6.508
27 O -0.511 6.511
28 H 0.027 0.973
29 H 0.052 0.948
30 H 0.034 0.966
31 H 0.035 0.965
32 H 0.104 0.896
33 H 0.265 0.735
34 H 0.401 0.599
35 H 0.435 0.565
36 H 0.146 0.854
37 H 0.135 0.865
38 H 0.133 0.867
39 H 0.141 0.859
40 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.478 10.017 -15.539 22.879
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.167 4.167
3 C 0.166 3.834
4 H 0.073 0.927
5 C -0.574 4.574
6 H 0.083 0.917
7 C -0.136 4.136
8 N -0.519 5.519
9 Si 0.731 3.269
10 H -0.196 1.196
11 H -0.208 1.208
12 H -0.208 1.208
13 N -0.317 5.317
14 C 0.272 3.728
15 O -0.399 6.399
16 C 0.291 3.709
17 O -0.378 6.378
18 N -0.297 5.297
19 C 0.125 3.875
20 C -0.158 4.158
21 C -0.077 4.077
22 C -0.174 4.174
23 C -0.059 4.059
24 C -0.170 4.170
25 C 0.374 3.626
26 O -0.397 6.397
27 O -0.323 6.323
28 H 0.046 0.954
29 H 0.071 0.929
30 H 0.053 0.947
31 H 0.054 0.946
32 H 0.122 0.878
33 H 0.075 0.925
34 H 0.236 0.764
35 H 0.281 0.719
36 H 0.163 0.837
37 H 0.153 0.847
38 H 0.151 0.849
39 H 0.159 0.841
40 H 0.275 0.725
Dipole moment (debyes) X Y Z Total
from point charges -13.212 9.533 -15.288 22.342
hybrid contribution 0.813 0.315 0.693 1.114
sum -12.399 9.848 -14.595 21.534
Atomic orbital electron populations
1.21863 0.98305 0.98429 1.01085 1.21963 0.92638 0.99363 1.02782
1.19035 0.94818 0.89407 0.80093 0.92701 1.21242 0.90289 1.39329
1.06582 0.91701 1.24880 0.98850 0.94616 0.95242 1.69894 1.35178
1.37478 1.09327 0.86350 0.84519 0.77819 0.78198 1.19628 1.20831
1.20806 1.46449 1.13248 1.52734 1.19243 1.19501 0.84649 0.81647
0.86954 1.90773 1.51049 1.59009 1.39061 1.21172 0.81325 0.78405
0.89952 1.90730 1.50501 1.56022 1.40529 1.43678 1.17902 1.55647
1.12450 1.17739 0.93007 0.90134 0.86611 1.21215 1.02435 1.01702
0.90426 1.21333 0.93927 0.94699 0.97719 1.21125 1.00594 0.97288
0.98386 1.21270 0.96131 0.98155 0.90363 1.18825 1.08926 0.97298
0.91953 1.20725 0.74406 0.78513 0.88970 1.90838 1.53202 1.64006
1.31691 1.84526 1.68509 1.37583 1.41698 0.95435 0.92888 0.94665
0.94641 0.87816 0.92494 0.76432 0.71911 0.83668 0.84749 0.84933
0.84082 0.72491
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.03 8.52 37.16 0.32 -2.72 16
2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16
3 C 0.27 6.67 2.24 -69.08 -0.15 6.51 16
4 H 0.06 1.56 7.58 -51.93 -0.39 1.16 16
5 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16
6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16
7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16
8 N -0.88 -24.27 11.29 55.43 0.63 -23.65 16
9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16
10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16
11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
13 N -0.67 -14.36 5.01 -55.39 -0.28 -14.64 16
14 C 0.49 10.18 6.45 -11.63 -0.08 10.10 16
15 O -0.52 -11.79 13.62 5.48 0.07 -11.72 16
16 C 0.51 9.08 7.61 -11.63 -0.09 8.99 16
17 O -0.50 -9.17 14.26 5.48 0.08 -9.09 16
18 N -0.64 -10.21 4.67 -10.11 -0.05 -10.26 16
19 C 0.22 3.02 6.25 -83.53 -0.52 2.49 16
20 C -0.14 -1.65 8.63 -39.42 -0.34 -1.99 16
21 C -0.06 -0.51 10.03 -39.54 -0.40 -0.90 16
22 C -0.16 -1.17 10.02 -39.62 -0.40 -1.57 16
23 C -0.04 -0.35 9.61 -39.19 -0.38 -0.73 16
24 C -0.17 -1.92 5.89 -104.82 -0.62 -2.54 16
25 C 0.53 6.23 8.25 34.45 0.28 6.51 16
26 O -0.51 -7.61 14.68 -19.27 -0.28 -7.89 16
27 O -0.51 -4.08 12.69 -40.66 -0.52 -4.59 16
28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16
30 H 0.03 0.74 5.65 -51.93 -0.29 0.45 16
31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16
32 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16
33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
34 H 0.40 8.03 8.01 -40.82 -0.33 7.70 16
35 H 0.44 7.16 5.79 -40.82 -0.24 6.92 16
36 H 0.15 1.86 6.54 -52.49 -0.34 1.52 16
37 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16
38 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16
39 H 0.14 0.91 7.62 -52.49 -0.40 0.51 16
40 H 0.42 1.60 9.11 45.56 0.42 2.02 16
LS Contribution 342.60 15.07 5.16 5.16
Total: -1.00 -31.53 342.60 -6.64 -38.17
By element:
Atomic # 1 Polarization: 18.25 SS G_CDS: -3.53 Total: 14.72 kcal
Atomic # 6 Polarization: 11.16 SS G_CDS: -2.91 Total: 8.25 kcal
Atomic # 7 Polarization: -48.84 SS G_CDS: 0.30 Total: -48.54 kcal
Atomic # 8 Polarization: -32.64 SS G_CDS: -0.65 Total: -33.29 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -31.53 -6.64 -38.17 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603516741.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.235 kcal
(2) G-P(sol) polarization free energy of solvation -31.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds