Wall clock time and date at job start Tue Mar 31 2020 12:34:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.47329 * 2 1
4 4 H 1.09002 * 109.46926 * 54.99048 * 3 2 1
5 5 C 1.50692 * 109.47321 * 174.99872 * 3 2 1
6 6 H 1.07994 * 120.00475 * 119.99688 * 5 3 2
7 7 C 1.37881 * 119.99823 * 299.99604 * 5 3 2
8 8 N 1.31520 * 120.00122 * 0.02562 * 7 5 3
9 9 Si 1.86800 * 120.00160 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.46946 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47205 * 119.99846 * 9 7 5
12 12 H 1.48504 * 109.46896 * 240.00169 * 9 7 5
13 13 N 1.46503 * 109.46696 * 294.99556 * 3 2 1
14 14 C 1.34775 * 120.00083 * 84.99962 * 13 3 2
15 15 O 1.21367 * 120.00069 * 0.02562 * 14 13 3
16 16 C 1.49363 * 120.00241 * 179.97438 * 14 13 3
17 17 O 1.21367 * 119.99689 * 0.02562 * 16 14 13
18 18 N 1.34775 * 120.00241 * 179.97438 * 16 14 13
19 19 C 1.39080 * 119.99939 * 185.27953 * 18 16 14
20 20 C 1.38901 * 120.17629 * 34.94294 * 19 18 16
21 21 C 1.38006 * 120.07059 * 179.97438 * 20 19 18
22 22 C 1.38573 * 120.42316 * 0.02562 * 21 20 19
23 23 C 1.37793 * 120.34704 * 359.97438 * 22 21 20
24 24 C 1.39728 * 119.92058 * 0.02562 * 23 22 21
25 25 C 1.47387 * 120.20827 * 179.97438 * 24 23 22
26 26 O 1.21511 * 120.00461 * 175.03492 * 25 24 23
27 27 O 1.34761 * 119.99999 * 355.04208 * 25 24 23
28 28 H 1.09001 * 109.47397 * 179.97438 * 1 2 3
29 29 H 1.08997 * 109.47735 * 300.00893 * 1 2 3
30 30 H 1.09001 * 109.46555 * 60.00352 * 1 2 3
31 31 H 1.08989 * 109.47407 * 239.99164 * 2 1 3
32 32 H 1.09001 * 109.46555 * 119.99648 * 2 1 3
33 33 H 0.96995 * 120.00115 * 180.02562 * 8 7 5
34 34 H 0.96994 * 120.00121 * 265.00243 * 13 3 2
35 35 H 0.97001 * 119.99884 * 5.27714 * 18 16 14
36 36 H 1.08001 * 119.96054 * 0.24401 * 20 19 18
37 37 H 1.08002 * 119.78513 * 179.97438 * 21 20 19
38 38 H 1.08000 * 119.82815 * 179.97438 * 22 21 20
39 39 H 1.08002 * 120.03799 * 180.02562 * 23 22 21
40 40 H 0.96695 * 117.00095 * 179.97438 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6053 1.9816 0.8417
5 6 3.5419 1.4443 0.1239
6 1 4.1473 1.8888 -0.6522
7 6 4.1432 0.8784 1.2281
8 7 3.4061 0.3367 2.1730
9 14 6.0049 0.8813 1.3821
10 1 6.5987 1.5461 0.1945
11 1 6.3989 1.6168 2.6105
12 1 6.4969 -0.5175 1.4633
13 7 1.6526 2.0974 -1.2519
14 6 0.4353 2.6643 -1.3672
15 8 -0.3397 2.6327 -0.4337
16 6 0.0404 3.3324 -2.6433
17 8 0.8156 3.3645 -3.5766
18 7 -1.1771 3.8989 -2.7588
19 6 -1.5869 4.4238 -3.9798
20 6 -1.2007 3.8143 -5.1667
21 6 -1.6090 4.3367 -6.3771
22 6 -2.4048 5.4703 -6.4194
23 6 -2.7980 6.0889 -5.2526
24 6 -2.3929 5.5723 -4.0191
25 6 -2.8094 6.2291 -2.7672
26 8 -2.5315 5.7272 -1.6961
27 8 -3.4985 7.3864 -2.8104
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8898
30 1 -0.3632 0.5138 -0.8900
31 1 1.8934 -0.5139 -0.8898
32 1 1.8933 -0.5138 0.8900
33 1 3.8291 -0.0610 2.9500
34 1 2.2721 2.1229 -1.9978
35 1 -1.7675 3.9404 -1.9903
36 1 -0.5838 2.9281 -5.1421
37 1 -1.3057 3.8593 -7.2971
38 1 -2.7185 5.8712 -7.3719
39 1 -3.4186 6.9719 -5.2914
40 1 -3.7501 7.7794 -1.9634
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001603516741.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:34:56
Heat of formation + Delta-G solvation = -151.398459 kcal
Electronic energy + Delta-G solvation = -26664.867797 eV
Core-core repulsion = 22636.979368 eV
Total energy + Delta-G solvation = -4027.888428 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-42.42804 -41.33514 -40.23261 -39.16114 -37.39102 -37.15604 -35.93206 -34.34473
-32.86605 -32.49780 -31.01049 -29.21229 -26.66312 -25.54398 -24.88722 -23.68622
-22.37620 -21.81503 -21.24162 -20.03240 -19.19507 -18.83159 -18.22325 -18.15331
-17.47647 -17.17627 -17.01904 -16.74171 -16.21560 -15.84067 -15.77210 -15.41290
-15.13850 -14.91680 -14.64609 -14.25244 -13.98870 -13.82222 -13.53120 -13.26031
-13.20225 -12.96556 -12.83154 -12.72225 -12.66870 -12.42009 -12.17407 -12.11838
-11.91112 -11.63391 -11.44715 -11.12259 -10.71049 -10.57312 -10.14932 -9.88990
-9.40202 -8.20252 -6.37719 -0.53657 0.02845 0.54633 1.26237 1.43485
1.44519 1.45632 1.57402 1.96503 2.08359 2.37931 2.67087 2.72413
3.09495 3.44701 3.66515 3.98366 4.04085 4.24609 4.32153 4.45280
4.47530 4.51483 4.68050 4.86042 4.97853 4.99555 5.12764 5.19012
5.27436 5.32573 5.35848 5.41837 5.48921 5.53829 5.64757 5.75481
5.82003 5.94694 6.08511 6.44456 6.64010 6.72131 6.87577 7.06439
7.34155 8.85356
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.020325 B = 0.003012 C = 0.002902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1377.254902 B = 9293.565775 C = 9645.128731
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.122 4.122
3 C 0.275 3.725
4 H 0.012 0.988
5 C -0.553 4.553
6 H 0.069 0.931
7 C 0.020 3.980
8 N -0.910 5.910
9 Si 0.972 3.028
10 H -0.264 1.264
11 H -0.282 1.282
12 H -0.276 1.276
13 N -0.668 5.668
14 C 0.493 3.507
15 O -0.545 6.545
16 C 0.516 3.484
17 O -0.512 6.512
18 N -0.638 5.638
19 C 0.182 3.818
20 C -0.153 4.153
21 C -0.051 4.051
22 C -0.136 4.136
23 C -0.033 4.033
24 C -0.177 4.177
25 C 0.531 3.469
26 O -0.550 6.550
27 O -0.495 6.495
28 H 0.051 0.949
29 H 0.033 0.967
30 H 0.038 0.962
31 H 0.043 0.957
32 H 0.080 0.920
33 H 0.267 0.733
34 H 0.409 0.591
35 H 0.430 0.570
36 H 0.129 0.871
37 H 0.165 0.835
38 H 0.175 0.825
39 H 0.169 0.831
40 H 0.434 0.566
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.047 11.356 -18.598 25.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.161 4.161
3 C 0.173 3.827
4 H 0.030 0.970
5 C -0.591 4.591
6 H 0.087 0.913
7 C -0.180 4.180
8 N -0.548 5.548
9 Si 0.796 3.204
10 H -0.188 1.188
11 H -0.208 1.208
12 H -0.201 1.201
13 N -0.317 5.317
14 C 0.273 3.727
15 O -0.424 6.424
16 C 0.298 3.702
17 O -0.387 6.387
18 N -0.289 5.289
19 C 0.086 3.914
20 C -0.174 4.174
21 C -0.069 4.069
22 C -0.154 4.154
23 C -0.051 4.051
24 C -0.181 4.181
25 C 0.378 3.622
26 O -0.443 6.443
27 O -0.309 6.309
28 H 0.070 0.930
29 H 0.052 0.948
30 H 0.057 0.943
31 H 0.062 0.938
32 H 0.098 0.902
33 H 0.077 0.923
34 H 0.245 0.755
35 H 0.275 0.725
36 H 0.147 0.853
37 H 0.183 0.817
38 H 0.193 0.807
39 H 0.187 0.813
40 H 0.297 0.703
Dipole moment (debyes) X Y Z Total
from point charges -13.827 10.922 -18.399 25.475
hybrid contribution 0.830 0.035 1.535 1.745
sum -12.997 10.956 -16.865 23.945
Atomic orbital electron populations
1.21718 0.96765 0.99730 1.00253 1.21811 0.93945 0.98429 1.01884
1.18677 0.94266 0.89638 0.80154 0.97037 1.21539 0.91024 1.39561
1.07022 0.91270 1.25721 1.03390 0.94114 0.94815 1.70025 1.37032
1.37970 1.09784 0.85301 0.78944 0.77975 0.78153 1.18843 1.20791
1.20132 1.46215 1.14022 1.53062 1.18446 1.19982 0.83888 0.80992
0.87885 1.90752 1.51641 1.59678 1.40371 1.20401 0.82272 0.79032
0.88490 1.90718 1.50877 1.56936 1.40148 1.43531 1.16777 1.55070
1.13503 1.18057 0.95509 0.91963 0.85824 1.21262 1.03043 1.01717
0.91341 1.21724 0.92982 0.94803 0.97401 1.21635 0.98318 0.95810
0.99684 1.21665 0.95477 0.98589 0.89357 1.19005 1.08892 0.97031
0.93180 1.20882 0.73906 0.78928 0.88532 1.90826 1.55060 1.65260
1.33166 1.84475 1.67352 1.35923 1.43121 0.92959 0.94818 0.94344
0.93839 0.90162 0.92337 0.75508 0.72532 0.85296 0.81718 0.80750
0.81315 0.70327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.67 8.52 71.98 0.61 -5.05 16
2 C -0.12 -5.99 5.45 30.60 0.17 -5.82 16
3 C 0.27 14.28 2.24 44.24 0.10 14.38 16
4 H 0.01 0.71 7.58 -2.39 -0.02 0.69 16
5 C -0.55 -29.75 8.73 25.60 0.22 -29.53 16
6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16
7 C 0.02 1.10 5.29 84.65 0.45 1.54 16
8 N -0.91 -51.42 11.29 21.45 0.24 -51.18 16
9 Si 0.97 42.37 29.54 68.60 2.03 44.40 16
10 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16
11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16
12 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16
13 N -0.67 -29.79 5.01 -447.52 -2.24 -32.04 16
14 C 0.49 21.20 6.45 87.24 0.56 21.76 16
15 O -0.55 -26.00 13.62 -3.30 -0.04 -26.04 16
16 C 0.52 19.09 7.61 87.24 0.66 19.76 16
17 O -0.51 -19.00 14.26 -3.30 -0.05 -19.05 16
18 N -0.64 -20.97 4.67 -304.25 -1.42 -22.39 16
19 C 0.18 4.91 6.25 38.67 0.24 5.15 16
20 C -0.15 -3.53 8.63 22.37 0.19 -3.34 16
21 C -0.05 -0.71 10.03 22.29 0.22 -0.49 16
22 C -0.14 -1.40 10.02 22.24 0.22 -1.18 16
23 C -0.03 -0.44 9.61 22.52 0.22 -0.22 16
24 C -0.18 -3.87 5.89 -19.99 -0.12 -3.99 16
25 C 0.53 12.14 8.25 70.23 0.58 12.72 16
26 O -0.55 -16.96 14.68 19.80 0.29 -16.67 16
27 O -0.50 -6.87 12.69 -56.71 -0.72 -7.59 16
28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
29 H 0.03 1.59 7.85 -2.39 -0.02 1.57 16
30 H 0.04 1.65 5.65 -2.39 -0.01 1.64 16
31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16
32 H 0.08 4.36 5.95 -2.39 -0.01 4.34 16
33 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16
34 H 0.41 16.82 8.01 -92.71 -0.74 16.08 16
35 H 0.43 14.94 5.79 -92.71 -0.54 14.41 16
36 H 0.13 3.34 6.54 -2.91 -0.02 3.32 16
37 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16
38 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16
39 H 0.17 1.34 7.62 -2.91 -0.02 1.32 16
40 H 0.43 2.55 9.11 -74.06 -0.67 1.87 16
Total: -1.00 -71.42 342.60 1.60 -69.82
By element:
Atomic # 1 Polarization: 35.87 SS G_CDS: -0.82 Total: 35.05 kcal
Atomic # 6 Polarization: 21.34 SS G_CDS: 4.34 Total: 25.68 kcal
Atomic # 7 Polarization: -102.18 SS G_CDS: -3.42 Total: -105.60 kcal
Atomic # 8 Polarization: -68.83 SS G_CDS: -0.52 Total: -69.35 kcal
Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal
Total: -71.42 1.60 -69.82 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001603516741.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.576 kcal
(2) G-P(sol) polarization free energy of solvation -71.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.998 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal
(6) G-S(sol) free energy of system = (1) + (5) -151.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds