Wall clock time and date at job start Tue Mar 31 2020 12:05:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38237 * 119.99795 * 2 1
4 4 C 1.38237 * 119.99861 * 179.97438 * 3 2 1
5 5 C 1.38240 * 119.99789 * 0.02562 * 4 3 2
6 6 C 1.50697 * 120.00103 * 179.97438 * 5 4 3
7 7 C 1.52996 * 109.47423 * 95.56382 * 6 5 4
8 8 H 1.08999 * 109.46974 * 54.71271 * 7 6 5
9 9 S 1.81405 * 109.47151 * 294.71222 * 7 6 5
10 10 C 1.81400 * 103.00084 * 172.93989 * 9 7 6
11 11 C 1.52997 * 109.47197 * 185.01836 * 10 9 7
12 12 C 1.50693 * 115.55138 * 320.79635 * 11 10 9
13 13 H 1.08001 * 120.00538 * 275.35356 * 12 11 10
14 14 C 1.37878 * 120.00032 * 95.35045 * 12 11 10
15 15 N 1.31515 * 120.00463 * 180.63132 * 14 12 11
16 16 Si 1.86805 * 119.99911 * 0.63371 * 14 12 11
17 17 H 1.48494 * 109.47010 * 92.15784 * 16 14 12
18 18 H 1.48501 * 109.47299 * 212.16098 * 16 14 12
19 19 H 1.48505 * 109.46986 * 332.15773 * 16 14 12
20 20 C 1.53005 * 117.49763 * 175.12494 * 11 10 9
21 21 C 1.53008 * 60.03211 * 252.50147 * 20 11 10
22 22 C 1.50698 * 109.47304 * 174.71174 * 7 6 5
23 23 O 1.20823 * 120.00333 * 230.00297 * 22 7 6
24 24 O 1.34234 * 120.00045 * 49.99869 * 22 7 6
25 25 C 1.38236 * 120.00139 * 0.24700 * 5 4 3
26 26 C 1.38231 * 119.99758 * 179.97438 * 2 1 3
27 27 H 1.09004 * 109.47411 * 89.99995 * 1 2 3
28 28 H 1.08998 * 109.47290 * 210.00108 * 1 2 3
29 29 H 1.08999 * 109.47060 * 330.00455 * 1 2 3
30 30 H 1.08001 * 120.00107 * 359.97438 * 3 2 1
31 31 H 1.07997 * 120.00171 * 179.97438 * 4 3 2
32 32 H 1.09011 * 109.46836 * 335.56316 * 6 5 4
33 33 H 1.08998 * 109.47533 * 215.56834 * 6 5 4
34 34 H 1.09004 * 109.47233 * 65.01642 * 10 9 7
35 35 H 1.08998 * 109.46938 * 305.02434 * 10 9 7
36 36 H 0.96995 * 120.00108 * 180.02562 * 15 14 12
37 37 H 1.09002 * 117.49787 * 0.02562 * 20 11 10
38 38 H 1.09000 * 117.49715 * 145.00061 * 20 11 10
39 39 H 1.09000 * 117.49523 * 107.50334 * 21 20 11
40 40 H 1.08991 * 117.49613 * 252.52136 * 21 20 11
41 41 H 0.96702 * 117.00144 * 179.97438 * 24 22 7
42 42 H 1.08001 * 120.00199 * 179.73010 * 25 5 4
43 43 H 1.07991 * 120.00427 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1981 1.1972 0.0000
4 6 3.5805 1.1972 0.0005
5 6 4.2717 0.0000 0.0005
6 6 5.7786 -0.0001 0.0005
7 6 6.2887 -0.1399 1.4362
8 1 5.8501 -1.0272 1.8927
9 16 5.8163 1.3280 2.3915
10 6 6.3057 0.8896 4.0823
11 6 5.8555 1.9900 5.0451
12 6 6.0030 3.4003 4.5350
13 1 6.9475 3.9145 4.6340
14 6 4.9319 4.0343 3.9418
15 7 5.0640 5.2607 3.4854
16 14 3.2930 3.1515 3.7863
17 1 2.4479 3.4653 4.9663
18 1 2.6038 3.6010 2.5501
19 1 3.5246 1.6861 3.7189
20 6 6.0747 1.7532 6.5408
21 6 4.6624 1.6884 5.9556
22 6 7.7900 -0.2705 1.4255
23 8 8.3231 -1.1643 2.0393
24 8 8.5350 0.6061 0.7338
25 6 3.5805 -1.1972 -0.0052
26 6 2.1981 -1.1971 0.0005
27 1 -0.3634 0.0000 -1.0277
28 1 -0.3634 -0.8899 0.5138
29 1 -0.3633 0.8900 0.5138
30 1 1.6581 2.1325 -0.0004
31 1 4.1205 2.1325 0.0001
32 1 6.1420 0.9356 -0.4246
33 1 6.1420 -0.8360 -0.5972
34 1 7.3896 0.7849 4.1312
35 1 5.8367 -0.0534 4.3633
36 1 4.3104 5.7068 3.0684
37 1 6.5400 0.8136 6.8387
38 1 6.3255 2.6176 7.1557
39 1 4.1983 0.7060 5.8686
40 1 3.9844 2.5103 6.1853
41 1 9.4937 0.4819 0.7571
42 1 4.1205 -2.1325 -0.0096
43 1 1.6582 -2.1324 0.0005
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001607776091.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:13
Heat of formation + Delta-G solvation = -50.830404 kcal
Electronic energy + Delta-G solvation = -25051.953259 eV
Core-core repulsion = 21574.719004 eV
Total energy + Delta-G solvation = -3477.234256 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.123 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.12256 -39.26428 -37.05959 -35.94577 -34.78517 -32.11319 -31.40830 -30.76476
-28.21298 -27.25937 -25.44492 -23.93456 -22.59173 -21.79423 -21.53399 -20.56054
-19.08139 -17.96518 -16.90885 -16.42021 -15.94175 -15.85314 -15.30827 -15.13660
-14.91627 -14.47701 -14.00813 -13.94476 -13.69994 -13.40372 -13.22062 -13.10287
-12.80173 -12.56797 -12.42670 -12.35179 -12.07909 -11.61196 -11.41609 -11.34989
-11.11614 -11.07194 -10.80774 -10.69836 -10.58594 -10.35868 -10.19567 -9.76003
-9.17165 -8.94938 -8.74797 -8.58694 -8.48280 -8.37058 -6.81553 -6.11146
-4.15782 1.43501 1.58085 1.76920 2.52574 3.10867 3.34052 3.39218
3.46837 3.60256 3.87497 4.47192 4.68010 4.82907 4.86498 4.92062
5.04194 5.15148 5.17692 5.21424 5.26669 5.48700 5.55943 5.59573
5.61474 5.64749 5.81027 5.82523 5.88038 5.96204 6.06484 6.08550
6.23650 6.24920 6.31086 6.41848 6.55736 6.59017 6.62818 6.74209
6.79299 6.91500 7.04132 7.17227 7.66821 8.00942 8.45120 8.88564
9.49253 10.99327
Molecular weight = 320.12amu
Principal moments of inertia in cm(-1)
A = 0.009653 B = 0.006843 C = 0.004836
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2900.006441 B = 4090.889802 C = 5788.689296
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.091 4.091
3 C -0.118 4.118
4 C -0.085 4.085
5 C -0.085 4.085
6 C -0.051 4.051
7 C -0.100 4.100
8 H 0.117 0.883
9 S -0.118 6.118
10 C -0.059 4.059
11 C 0.013 3.987
12 C -0.483 4.483
13 H 0.080 0.920
14 C 0.093 3.907
15 N -0.890 5.890
16 Si 0.857 3.143
17 H -0.287 1.287
18 H -0.292 1.292
19 H -0.228 1.228
20 C -0.175 4.175
21 C -0.199 4.199
22 C 0.494 3.506
23 O -0.526 6.526
24 O -0.498 6.498
25 C -0.113 4.113
26 C -0.124 4.124
27 H 0.067 0.933
28 H 0.064 0.936
29 H 0.065 0.935
30 H 0.120 0.880
31 H 0.127 0.873
32 H 0.095 0.905
33 H 0.081 0.919
34 H 0.070 0.930
35 H 0.060 0.940
36 H 0.265 0.735
37 H 0.072 0.928
38 H 0.090 0.910
39 H 0.075 0.925
40 H 0.088 0.912
41 H 0.407 0.593
42 H 0.118 0.882
43 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.328 -12.061 -8.621 15.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.091 4.091
3 C -0.136 4.136
4 C -0.103 4.103
5 C -0.086 4.086
6 C -0.089 4.089
7 C -0.228 4.228
8 H 0.135 0.865
9 S 0.113 5.887
10 C -0.208 4.208
11 C 0.011 3.989
12 C -0.523 4.523
13 H 0.098 0.902
14 C -0.112 4.112
15 N -0.526 5.526
16 Si 0.685 3.315
17 H -0.215 1.215
18 H -0.218 1.218
19 H -0.151 1.151
20 C -0.214 4.214
21 C -0.236 4.236
22 C 0.334 3.666
23 O -0.416 6.416
24 O -0.308 6.308
25 C -0.131 4.131
26 C -0.143 4.143
27 H 0.086 0.914
28 H 0.083 0.917
29 H 0.084 0.916
30 H 0.138 0.862
31 H 0.145 0.855
32 H 0.113 0.887
33 H 0.100 0.900
34 H 0.089 0.911
35 H 0.078 0.922
36 H 0.075 0.925
37 H 0.091 0.909
38 H 0.109 0.891
39 H 0.094 0.906
40 H 0.106 0.894
41 H 0.265 0.735
42 H 0.136 0.864
43 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -4.189 -11.182 -8.987 14.945
hybrid contribution 0.296 -1.537 0.655 1.697
sum -3.893 -12.720 -8.332 15.696
Atomic orbital electron populations
1.20778 0.91552 1.02694 1.01977 1.19885 0.95867 0.93287 1.00020
1.21047 0.94319 0.97521 1.00739 1.21116 0.94119 0.97916 0.97143
1.19603 0.94486 0.93463 1.01001 1.20272 0.92003 1.04479 0.92168
1.23446 0.89385 1.07097 1.02827 0.86532 1.88138 1.80125 1.17004
1.03385 1.23223 1.02400 1.00322 0.94819 1.19080 0.97893 0.94764
0.87146 1.20206 0.99735 0.93728 1.38590 0.90160 1.24876 0.98550
0.94180 0.93585 1.69871 1.31817 1.12120 1.38752 0.87098 0.84089
0.83608 0.76699 1.21485 1.21846 1.15104 1.22946 0.98891 1.01077
0.98462 1.23038 0.91778 1.00838 1.07966 1.23332 0.90890 0.77641
0.74781 1.90702 1.74400 1.34193 1.42329 1.84571 1.24524 1.54485
1.67256 1.20937 0.94183 0.97224 1.00728 1.20887 0.94027 0.97221
1.02116 0.91418 0.91748 0.91593 0.86215 0.85506 0.88677 0.90035
0.91150 0.92163 0.92506 0.90916 0.89112 0.90638 0.89360 0.73549
0.86395 0.86452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16
2 C -0.09 -1.20 5.88 -104.63 -0.62 -1.82 16
3 C -0.12 -1.77 9.70 -39.58 -0.38 -2.16 16
4 C -0.08 -1.34 8.83 -39.58 -0.35 -1.69 16
5 C -0.09 -1.23 4.75 -104.62 -0.50 -1.72 16
6 C -0.05 -0.69 4.61 -27.89 -0.13 -0.82 16
7 C -0.10 -1.58 2.66 -27.89 -0.07 -1.66 16
8 H 0.12 1.80 8.13 -51.92 -0.42 1.38 16
9 S -0.12 -2.40 15.33 -107.50 -1.65 -4.04 16
10 C -0.06 -1.23 5.89 37.16 0.22 -1.01 16
11 C 0.01 0.30 1.40 -155.62 -0.22 0.09 16
12 C -0.48 -13.15 8.48 -34.44 -0.29 -13.44 16
13 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16
14 C 0.09 2.58 5.07 -17.82 -0.09 2.49 16
15 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16
16 Si 0.86 21.25 22.69 -169.99 -3.86 17.39 16
17 H -0.29 -7.18 7.00 56.52 0.40 -6.78 16
18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
19 H -0.23 -5.35 5.61 56.52 0.32 -5.04 16
20 C -0.17 -3.53 9.95 -26.72 -0.27 -3.79 16
21 C -0.20 -4.25 7.03 -26.69 -0.19 -4.44 16
22 C 0.49 7.86 6.93 36.00 0.25 8.11 16
23 O -0.53 -9.50 17.85 -18.75 -0.33 -9.83 16
24 O -0.50 -6.76 13.12 -39.27 -0.52 -7.28 16
25 C -0.11 -1.45 9.72 -39.58 -0.38 -1.84 16
26 C -0.12 -1.56 9.70 -39.58 -0.38 -1.94 16
27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
28 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16
29 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16
30 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16
31 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16
32 H 0.09 1.31 8.00 -51.92 -0.42 0.90 16
33 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16
34 H 0.07 1.45 8.14 -51.92 -0.42 1.02 16
35 H 0.06 1.15 7.94 -51.92 -0.41 0.74 16
36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16
39 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16
40 H 0.09 2.00 6.13 -51.93 -0.32 1.69 16
41 H 0.41 3.60 9.10 45.56 0.41 4.02 16
42 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16
43 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16
LS Contribution 366.13 15.07 5.52 5.52
Total: -1.00 -32.21 366.13 -8.97 -41.18
By element:
Atomic # 1 Polarization: 15.08 SS G_CDS: -5.87 Total: 9.21 kcal
Atomic # 6 Polarization: -23.42 SS G_CDS: -3.04 Total: -26.46 kcal
Atomic # 7 Polarization: -26.46 SS G_CDS: 0.77 Total: -25.68 kcal
Atomic # 8 Polarization: -16.26 SS G_CDS: -0.85 Total: -17.11 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -3.86 Total: 17.39 kcal
Atomic # 16 Polarization: -2.40 SS G_CDS: -1.65 Total: -4.04 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -32.21 -8.97 -41.18 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001607776091.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.652 kcal
(2) G-P(sol) polarization free energy of solvation -32.206 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.830 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds