Wall clock time and date at job start Tue Mar 31 2020 12:05:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38237 * 119.99795 * 2 1
4 4 C 1.38237 * 119.99861 * 179.97438 * 3 2 1
5 5 C 1.38240 * 119.99789 * 0.02562 * 4 3 2
6 6 C 1.50697 * 120.00103 * 179.97438 * 5 4 3
7 7 C 1.52996 * 109.47423 * 95.56382 * 6 5 4
8 8 H 1.08999 * 109.46974 * 54.71271 * 7 6 5
9 9 S 1.81405 * 109.47151 * 294.71222 * 7 6 5
10 10 C 1.81400 * 103.00084 * 172.93989 * 9 7 6
11 11 C 1.52997 * 109.47197 * 185.01836 * 10 9 7
12 12 C 1.50693 * 115.55138 * 320.79635 * 11 10 9
13 13 H 1.08001 * 120.00538 * 275.35356 * 12 11 10
14 14 C 1.37878 * 120.00032 * 95.35045 * 12 11 10
15 15 N 1.31515 * 120.00463 * 180.63132 * 14 12 11
16 16 Si 1.86805 * 119.99911 * 0.63371 * 14 12 11
17 17 H 1.48494 * 109.47010 * 92.15784 * 16 14 12
18 18 H 1.48501 * 109.47299 * 212.16098 * 16 14 12
19 19 H 1.48505 * 109.46986 * 332.15773 * 16 14 12
20 20 C 1.53005 * 117.49763 * 175.12494 * 11 10 9
21 21 C 1.53008 * 60.03211 * 252.50147 * 20 11 10
22 22 C 1.50698 * 109.47304 * 174.71174 * 7 6 5
23 23 O 1.20823 * 120.00333 * 230.00297 * 22 7 6
24 24 O 1.34234 * 120.00045 * 49.99869 * 22 7 6
25 25 C 1.38236 * 120.00139 * 0.24700 * 5 4 3
26 26 C 1.38231 * 119.99758 * 179.97438 * 2 1 3
27 27 H 1.09004 * 109.47411 * 89.99995 * 1 2 3
28 28 H 1.08998 * 109.47290 * 210.00108 * 1 2 3
29 29 H 1.08999 * 109.47060 * 330.00455 * 1 2 3
30 30 H 1.08001 * 120.00107 * 359.97438 * 3 2 1
31 31 H 1.07997 * 120.00171 * 179.97438 * 4 3 2
32 32 H 1.09011 * 109.46836 * 335.56316 * 6 5 4
33 33 H 1.08998 * 109.47533 * 215.56834 * 6 5 4
34 34 H 1.09004 * 109.47233 * 65.01642 * 10 9 7
35 35 H 1.08998 * 109.46938 * 305.02434 * 10 9 7
36 36 H 0.96995 * 120.00108 * 180.02562 * 15 14 12
37 37 H 1.09002 * 117.49787 * 0.02562 * 20 11 10
38 38 H 1.09000 * 117.49715 * 145.00061 * 20 11 10
39 39 H 1.09000 * 117.49523 * 107.50334 * 21 20 11
40 40 H 1.08991 * 117.49613 * 252.52136 * 21 20 11
41 41 H 0.96702 * 117.00144 * 179.97438 * 24 22 7
42 42 H 1.08001 * 120.00199 * 179.73010 * 25 5 4
43 43 H 1.07991 * 120.00427 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1981 1.1972 0.0000
4 6 3.5805 1.1972 0.0005
5 6 4.2717 0.0000 0.0005
6 6 5.7786 -0.0001 0.0005
7 6 6.2887 -0.1399 1.4362
8 1 5.8501 -1.0272 1.8927
9 16 5.8163 1.3280 2.3915
10 6 6.3057 0.8896 4.0823
11 6 5.8555 1.9900 5.0451
12 6 6.0030 3.4003 4.5350
13 1 6.9475 3.9145 4.6340
14 6 4.9319 4.0343 3.9418
15 7 5.0640 5.2607 3.4854
16 14 3.2930 3.1515 3.7863
17 1 2.4479 3.4653 4.9663
18 1 2.6038 3.6010 2.5501
19 1 3.5246 1.6861 3.7189
20 6 6.0747 1.7532 6.5408
21 6 4.6624 1.6884 5.9556
22 6 7.7900 -0.2705 1.4255
23 8 8.3231 -1.1643 2.0393
24 8 8.5350 0.6061 0.7338
25 6 3.5805 -1.1972 -0.0052
26 6 2.1981 -1.1971 0.0005
27 1 -0.3634 0.0000 -1.0277
28 1 -0.3634 -0.8899 0.5138
29 1 -0.3633 0.8900 0.5138
30 1 1.6581 2.1325 -0.0004
31 1 4.1205 2.1325 0.0001
32 1 6.1420 0.9356 -0.4246
33 1 6.1420 -0.8360 -0.5972
34 1 7.3896 0.7849 4.1312
35 1 5.8367 -0.0534 4.3633
36 1 4.3104 5.7068 3.0684
37 1 6.5400 0.8136 6.8387
38 1 6.3255 2.6176 7.1557
39 1 4.1983 0.7060 5.8686
40 1 3.9844 2.5103 6.1853
41 1 9.4937 0.4819 0.7571
42 1 4.1205 -2.1325 -0.0096
43 1 1.6582 -2.1324 0.0005
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001607776091.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:12
Heat of formation + Delta-G solvation = -69.162787 kcal
Electronic energy + Delta-G solvation = -25052.748211 eV
Core-core repulsion = 21574.719004 eV
Total energy + Delta-G solvation = -3478.029208 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 320.123 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.34387 -40.29603 -38.80768 -37.15098 -35.85501 -34.23703 -32.46448 -31.78502
-29.80513 -28.37157 -27.46155 -24.98818 -23.62186 -23.45963 -22.75679 -21.60866
-20.91413 -19.21812 -18.51455 -17.99731 -17.24771 -16.98592 -16.91500 -16.36346
-16.06533 -15.91973 -15.67043 -15.21688 -14.89774 -14.70835 -14.64600 -14.37992
-14.27197 -14.13237 -13.64859 -13.47605 -13.19003 -13.00327 -12.75482 -12.66310
-12.54124 -12.45484 -12.16573 -12.12948 -11.98195 -11.82664 -11.75602 -11.62071
-10.93147 -10.68205 -10.60184 -10.21623 -9.77854 -9.39154 -8.42302 -8.28070
-6.34852 0.33057 0.41294 0.54923 1.16860 1.37724 1.44516 1.59724
1.86470 2.05281 2.40456 2.82734 3.09069 3.13323 3.54979 3.78818
3.92337 3.95446 4.04287 4.14304 4.15710 4.18205 4.27672 4.35485
4.45394 4.46631 4.58842 4.65082 4.69106 4.79115 4.82186 4.84476
4.91007 4.98239 5.01889 5.19422 5.21581 5.31257 5.41145 5.49070
5.53967 5.67107 5.73336 5.73986 6.16545 6.27351 6.69418 6.91753
7.34164 8.86351
Molecular weight = 320.12amu
Principal moments of inertia in cm(-1)
A = 0.009653 B = 0.006843 C = 0.004836
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2900.006441 B = 4090.889802 C = 5788.689296
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.095 4.095
3 C -0.142 4.142
4 C -0.108 4.108
5 C -0.095 4.095
6 C -0.046 4.046
7 C -0.078 4.078
8 H 0.129 0.871
9 S -0.176 6.176
10 C -0.048 4.048
11 C -0.017 4.017
12 C -0.480 4.480
13 H 0.034 0.966
14 C 0.050 3.950
15 N -0.940 5.940
16 Si 0.911 3.089
17 H -0.289 1.289
18 H -0.301 1.301
19 H -0.204 1.204
20 C -0.156 4.156
21 C -0.194 4.194
22 C 0.500 3.500
23 O -0.546 6.546
24 O -0.498 6.498
25 C -0.110 4.110
26 C -0.124 4.124
27 H 0.083 0.917
28 H 0.081 0.919
29 H 0.060 0.940
30 H 0.113 0.887
31 H 0.102 0.898
32 H 0.085 0.915
33 H 0.114 0.886
34 H 0.066 0.934
35 H 0.083 0.917
36 H 0.264 0.736
37 H 0.108 0.892
38 H 0.082 0.918
39 H 0.104 0.896
40 H 0.070 0.930
41 H 0.427 0.573
42 H 0.146 0.854
43 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.199 -16.143 -8.796 18.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.095 4.095
3 C -0.160 4.160
4 C -0.126 4.126
5 C -0.095 4.095
6 C -0.084 4.084
7 C -0.207 4.207
8 H 0.147 0.853
9 S 0.055 5.945
10 C -0.196 4.196
11 C -0.019 4.019
12 C -0.518 4.518
13 H 0.052 0.948
14 C -0.150 4.150
15 N -0.579 5.579
16 Si 0.737 3.263
17 H -0.217 1.217
18 H -0.229 1.229
19 H -0.126 1.126
20 C -0.194 4.194
21 C -0.231 4.231
22 C 0.340 3.660
23 O -0.438 6.438
24 O -0.311 6.311
25 C -0.128 4.128
26 C -0.142 4.142
27 H 0.101 0.899
28 H 0.100 0.900
29 H 0.079 0.921
30 H 0.131 0.869
31 H 0.120 0.880
32 H 0.104 0.896
33 H 0.133 0.867
34 H 0.085 0.915
35 H 0.102 0.898
36 H 0.072 0.928
37 H 0.126 0.874
38 H 0.101 0.899
39 H 0.122 0.878
40 H 0.089 0.911
41 H 0.289 0.711
42 H 0.164 0.836
43 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -5.031 -15.256 -9.136 18.481
hybrid contribution 0.692 -0.268 0.637 0.978
sum -4.339 -15.524 -8.499 18.223
Atomic orbital electron populations
1.20836 0.89593 1.03313 1.03189 1.20234 0.97440 0.92875 0.98950
1.21163 0.94267 0.98408 1.02208 1.21070 0.94658 0.97831 0.99072
1.19672 0.94751 0.93515 1.01589 1.20305 0.91764 1.05369 0.90986
1.23398 0.89702 1.04474 1.03117 0.85302 1.88331 1.80524 1.21003
1.04681 1.23081 1.02268 1.00147 0.94115 1.19015 1.00662 0.93084
0.89121 1.20246 0.97574 0.95925 1.38077 0.94808 1.25496 1.01611
0.94493 0.93387 1.70003 1.32736 1.14092 1.41031 0.86278 0.80174
0.83989 0.75810 1.21682 1.22917 1.12594 1.22998 0.98097 1.02411
0.95943 1.23063 0.91703 1.01589 1.06750 1.23213 0.90927 0.77430
0.74421 1.90701 1.74762 1.35145 1.43219 1.84535 1.26353 1.53679
1.66493 1.21277 0.94635 0.97535 0.99339 1.21287 0.94157 0.98039
1.00703 0.89856 0.89985 0.92111 0.86922 0.87976 0.89647 0.86739
0.91507 0.89804 0.92752 0.87411 0.89897 0.87781 0.91112 0.71116
0.83589 0.83386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.05 10.01 71.24 0.71 -1.33 16
2 C -0.09 -2.32 5.88 -19.87 -0.12 -2.43 16
3 C -0.14 -4.26 9.70 22.27 0.22 -4.05 16
4 C -0.11 -3.44 8.83 22.27 0.20 -3.25 16
5 C -0.10 -2.56 4.75 -19.87 -0.09 -2.65 16
6 C -0.05 -1.16 4.61 29.85 0.14 -1.02 16
7 C -0.08 -2.31 2.66 29.85 0.08 -2.23 16
8 H 0.13 3.52 8.13 -2.39 -0.02 3.50 16
9 S -0.18 -7.02 15.33 -56.49 -0.87 -7.89 16
10 C -0.05 -1.89 5.89 71.98 0.42 -1.47 16
11 C -0.02 -0.77 1.40 -52.90 -0.07 -0.84 16
12 C -0.48 -26.89 8.48 25.60 0.22 -26.68 16
13 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16
14 C 0.05 2.86 5.07 84.65 0.43 3.29 16
15 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16
16 Si 0.91 44.96 22.69 68.60 1.56 46.52 16
17 H -0.29 -14.17 7.00 99.48 0.70 -13.48 16
18 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16
19 H -0.20 -9.17 5.61 99.48 0.56 -8.61 16
20 C -0.16 -5.93 9.95 30.60 0.30 -5.63 16
21 C -0.19 -7.82 7.03 30.62 0.22 -7.60 16
22 C 0.50 14.77 6.93 71.24 0.49 15.26 16
23 O -0.55 -18.32 17.85 21.97 0.39 -17.93 16
24 O -0.50 -12.66 13.12 -51.45 -0.68 -13.34 16
25 C -0.11 -2.44 9.72 22.27 0.22 -2.22 16
26 C -0.12 -2.64 9.70 22.27 0.22 -2.43 16
27 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16
28 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16
29 H 0.06 1.16 8.09 -2.39 -0.02 1.14 16
30 H 0.11 3.36 8.06 -2.91 -0.02 3.33 16
31 H 0.10 3.64 8.06 -2.91 -0.02 3.62 16
32 H 0.08 2.31 8.00 -2.38 -0.02 2.29 16
33 H 0.11 2.13 8.12 -2.39 -0.02 2.11 16
34 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16
35 H 0.08 2.90 7.94 -2.39 -0.02 2.89 16
36 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16
37 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16
38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16
39 H 0.10 3.60 8.08 -2.39 -0.02 3.58 16
40 H 0.07 3.11 6.13 -2.39 -0.01 3.09 16
41 H 0.43 6.74 9.10 -74.06 -0.67 6.06 16
42 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16
43 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16
Total: -1.00 -72.51 366.13 4.45 -68.05
By element:
Atomic # 1 Polarization: 28.10 SS G_CDS: 0.17 Total: 28.27 kcal
Atomic # 6 Polarization: -48.85 SS G_CDS: 3.57 Total: -45.27 kcal
Atomic # 7 Polarization: -58.71 SS G_CDS: 0.30 Total: -58.41 kcal
Atomic # 8 Polarization: -30.98 SS G_CDS: -0.28 Total: -31.27 kcal
Atomic # 14 Polarization: 44.96 SS G_CDS: 1.56 Total: 46.52 kcal
Atomic # 16 Polarization: -7.02 SS G_CDS: -0.87 Total: -7.89 kcal
Total: -72.51 4.45 -68.05 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001607776091.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.109 kcal
(2) G-P(sol) polarization free energy of solvation -72.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.616 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.054 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds