Wall clock time and date at job start Tue Mar 31 2020 12:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37663 * 119.96141 * 2 1 4 4 C 1.39791 * 119.92139 * 180.27207 * 3 2 1 5 5 C 1.47470 * 120.06988 * 179.76755 * 4 3 2 6 6 O 1.21509 * 120.00327 * 359.97438 * 5 4 3 7 7 O 1.34749 * 120.00027 * 179.97438 * 5 4 3 8 8 C 1.39824 * 119.85822 * 359.74543 * 4 3 2 9 9 C 1.37624 * 119.92249 * 359.97438 * 8 4 3 10 10 C 1.39175 * 119.96415 * 179.76229 * 2 1 3 11 11 N 1.39240 * 119.92606 * 0.02562 * 10 2 1 12 12 C 1.34783 * 119.99991 * 153.91849 * 11 10 2 13 13 O 1.21357 * 119.99645 * 3.82287 * 12 11 10 14 14 C 1.49362 * 119.99926 * 183.82688 * 12 11 10 15 15 O 1.21365 * 120.00278 * 359.97438 * 14 12 11 16 16 N 1.34780 * 120.00044 * 180.02562 * 14 12 11 17 17 C 1.46499 * 120.00016 * 180.02562 * 16 14 12 18 18 H 1.08998 * 109.47327 * 324.99681 * 17 16 14 19 19 C 1.52998 * 109.47168 * 84.99314 * 17 16 14 20 20 C 1.50698 * 109.46763 * 204.99546 * 17 16 14 21 21 H 1.08000 * 120.00532 * 334.87780 * 20 17 16 22 22 C 1.37883 * 119.99745 * 154.88064 * 20 17 16 23 23 N 1.31518 * 119.99452 * 174.94288 * 22 20 17 24 24 Si 1.86797 * 119.99989 * 354.94324 * 22 20 17 25 25 H 1.48502 * 109.46933 * 275.02666 * 24 22 20 26 26 H 1.48495 * 109.47358 * 35.02944 * 24 22 20 27 27 H 1.48505 * 109.47027 * 155.03344 * 24 22 20 28 28 H 1.09002 * 109.47453 * 270.23641 * 1 2 3 29 29 H 1.09003 * 109.47225 * 30.23895 * 1 2 3 30 30 H 1.09005 * 109.47090 * 150.23350 * 1 2 3 31 31 H 1.07999 * 120.04029 * 0.02562 * 3 2 1 32 32 H 0.96702 * 117.00092 * 180.02562 * 7 5 4 33 33 H 1.07999 * 120.04214 * 179.97438 * 8 4 3 34 34 H 1.08000 * 119.96216 * 179.97438 * 9 8 4 35 35 H 0.96997 * 120.00470 * 333.92094 * 11 10 2 36 36 H 0.96995 * 119.99721 * 359.97438 * 16 14 12 37 37 H 1.08994 * 109.47766 * 294.99039 * 19 17 16 38 38 H 1.09001 * 109.46982 * 54.99712 * 19 17 16 39 39 H 1.09007 * 109.47042 * 174.98570 * 19 17 16 40 40 H 0.97006 * 119.99405 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1927 0.0000 4 6 3.5924 1.1917 -0.0058 5 6 4.3322 2.4674 -0.0109 6 8 3.7267 3.5209 -0.0107 7 8 5.6796 2.4648 -0.0160 8 6 4.2877 -0.0214 -0.0061 9 6 3.5942 -1.2102 -0.0003 10 6 2.2021 -1.2057 0.0050 11 7 1.5036 -2.4102 0.0095 12 6 2.0726 -3.5211 -0.4991 13 8 3.2185 -3.4879 -0.8974 14 6 1.2929 -4.7930 -0.5726 15 8 0.1471 -4.8262 -0.1739 16 7 1.8621 -5.9040 -1.0807 17 6 1.0971 -7.1513 -1.1533 18 1 0.4338 -7.2214 -0.2913 19 6 0.2666 -7.1662 -2.4382 20 6 2.0452 -8.3226 -1.1543 21 1 3.0583 -8.1971 -1.5068 22 6 1.6193 -9.5547 -0.7051 23 7 2.4134 -10.5989 -0.7981 24 14 -0.0855 -9.7405 0.0356 25 1 -0.0397 -9.3886 1.4776 26 1 -1.0310 -8.8350 -0.6652 27 1 -0.5408 -11.1458 -0.1168 28 1 -0.3634 0.0042 1.0277 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6545 2.1280 0.0004 32 1 6.1203 3.3256 -0.0189 33 1 5.3676 -0.0256 -0.0110 34 1 4.1306 -2.1475 -0.0009 35 1 0.6074 -2.4499 0.3785 36 1 2.7779 -5.8775 -1.3990 37 1 -0.4794 -6.3726 -2.3980 38 1 0.9208 -7.0070 -3.2955 39 1 -0.2331 -8.1300 -2.5367 40 1 2.1135 -11.4658 -0.4824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610438893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:40 Heat of formation + Delta-G solvation = -132.161628 kcal Electronic energy + Delta-G solvation = -25842.556527 eV Core-core repulsion = 21815.502270 eV Total energy + Delta-G solvation = -4027.054257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33807 -40.47395 -39.27174 -38.10943 -36.38241 -35.68195 -34.89862 -33.04613 -32.47854 -30.66055 -30.03046 -27.41285 -25.94862 -25.38687 -23.81379 -22.63297 -21.35715 -20.66578 -19.90062 -19.06439 -18.15410 -17.72481 -17.38026 -16.91395 -16.07028 -16.00535 -15.88013 -15.42137 -15.09704 -14.60582 -14.37989 -14.19920 -13.96034 -13.73528 -13.51055 -13.36987 -12.94402 -12.72172 -12.50040 -12.42797 -12.26900 -11.90752 -11.77961 -11.72838 -11.37511 -11.26082 -10.98754 -10.89917 -10.75534 -10.56972 -9.97359 -9.38157 -9.35292 -9.12499 -8.82634 -8.51191 -8.44354 -6.32090 -4.36898 0.27492 1.03946 1.49774 2.24273 2.38348 2.72461 3.18029 3.26668 3.31064 3.31669 3.52147 3.78336 4.22762 4.39036 4.49836 4.72911 4.76093 4.84576 4.92965 5.05629 5.10051 5.28852 5.34235 5.59490 5.75368 5.83911 5.93879 6.01018 6.04914 6.14727 6.16940 6.34709 6.48716 6.58730 6.69322 6.78401 6.96983 7.13090 7.29399 7.51723 7.58522 7.89444 8.30627 8.40630 8.69179 9.26819 10.79420 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.028483 B = 0.002496 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.792873 B =11216.980841 C =11869.550970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.129 4.129 3 C -0.031 4.031 4 C -0.154 4.154 5 C 0.532 3.468 6 O -0.521 6.521 7 O -0.512 6.512 8 C -0.041 4.041 9 C -0.149 4.149 10 C 0.191 3.809 11 N -0.646 5.646 12 C 0.509 3.491 13 O -0.492 6.492 14 C 0.496 3.504 15 O -0.536 6.536 16 N -0.659 5.659 17 C 0.233 3.767 18 H 0.053 0.947 19 C -0.152 4.152 20 C -0.537 4.537 21 H 0.082 0.918 22 C 0.083 3.917 23 N -0.884 5.884 24 Si 0.872 3.128 25 H -0.272 1.272 26 H -0.257 1.257 27 H -0.284 1.284 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.413 0.587 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.426 0.574 36 H 0.408 0.592 37 H 0.031 0.969 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 22.765 2.065 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.132 4.132 3 C -0.050 4.050 4 C -0.157 4.157 5 C 0.377 3.623 6 O -0.411 6.411 7 O -0.324 6.324 8 C -0.060 4.060 9 C -0.169 4.169 10 C 0.094 3.906 11 N -0.291 5.291 12 C 0.293 3.707 13 O -0.365 6.365 14 C 0.274 3.726 15 O -0.415 6.415 16 N -0.308 5.308 17 C 0.131 3.869 18 H 0.070 0.930 19 C -0.211 4.211 20 C -0.575 4.575 21 H 0.100 0.900 22 C -0.122 4.122 23 N -0.520 5.520 24 Si 0.698 3.302 25 H -0.198 1.198 26 H -0.181 1.181 27 H -0.210 1.210 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.272 0.728 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.265 0.735 36 H 0.244 0.756 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.207 22.283 2.056 22.378 hybrid contribution -0.463 0.361 0.423 0.724 sum -0.256 22.643 2.479 22.780 Atomic orbital electron populations 1.20783 0.89915 1.03739 1.03021 1.19561 0.96722 0.90942 1.05954 1.20869 0.91890 0.97886 0.94361 1.18975 0.93212 0.90668 1.12796 1.20833 0.80317 0.89396 0.71752 1.90887 1.69612 1.33674 1.46938 1.84580 1.21105 1.40846 1.85841 1.21381 1.00741 0.90413 0.93435 1.21735 0.92281 1.00586 1.02289 1.17991 0.91700 0.84684 0.96255 1.43257 1.20563 1.06711 1.58554 1.20990 0.87179 0.85337 0.77239 1.90674 1.16881 1.84374 1.44589 1.19670 0.87085 0.84615 0.81233 1.90736 1.17289 1.84715 1.48800 1.46462 1.17722 1.09250 1.57399 1.19299 0.91917 0.80621 0.95092 0.92954 1.22320 0.98959 1.00482 0.99350 1.20952 0.99527 0.91882 1.45158 0.89961 1.24873 0.97445 0.95452 0.94457 1.69877 1.36698 1.00186 1.45250 0.86967 0.84875 0.77800 0.80598 1.19774 1.18149 1.20979 0.90532 0.90528 0.91114 0.84095 0.72818 0.83992 0.81790 0.73465 0.75608 0.95036 0.93157 0.92060 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.43 36.00 0.34 -0.52 16 2 C -0.13 -1.25 5.89 -104.49 -0.62 -1.86 16 3 C -0.03 -0.31 9.23 -39.21 -0.36 -0.67 16 4 C -0.15 -1.59 5.88 -104.96 -0.62 -2.21 16 5 C 0.53 5.39 8.26 34.49 0.29 5.68 16 6 O -0.52 -6.53 17.12 -19.27 -0.33 -6.86 16 7 O -0.51 -3.73 12.67 -40.62 -0.51 -4.24 16 8 C -0.04 -0.41 9.60 -39.21 -0.38 -0.79 16 9 C -0.15 -1.74 8.76 -39.44 -0.35 -2.08 16 10 C 0.19 2.17 6.43 -83.79 -0.54 1.64 16 11 N -0.65 -7.74 4.92 -10.29 -0.05 -7.80 16 12 C 0.51 7.55 7.77 -11.62 -0.09 7.46 16 13 O -0.49 -7.79 13.37 5.49 0.07 -7.72 16 14 C 0.50 8.75 7.85 -11.63 -0.09 8.66 16 15 O -0.54 -10.36 16.14 5.48 0.09 -10.27 16 16 N -0.66 -12.71 5.06 -55.39 -0.28 -12.99 16 17 C 0.23 5.20 2.12 -69.08 -0.15 5.06 16 18 H 0.05 1.25 5.34 -51.93 -0.28 0.97 16 19 C -0.15 -3.13 9.10 37.16 0.34 -2.80 16 20 C -0.54 -13.87 9.06 -34.44 -0.31 -14.18 16 21 H 0.08 2.26 8.02 -52.49 -0.42 1.84 16 22 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 23 N -0.88 -25.26 13.96 55.43 0.77 -24.48 16 24 Si 0.87 20.28 26.19 -169.99 -4.45 15.83 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.26 -5.75 6.15 56.52 0.35 -5.40 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.07 0.53 7.00 -51.93 -0.36 0.17 16 31 H 0.14 1.24 7.64 -52.49 -0.40 0.83 16 32 H 0.41 1.13 9.11 45.56 0.42 1.55 16 33 H 0.14 1.21 7.60 -52.49 -0.40 0.81 16 34 H 0.16 2.11 5.52 -52.49 -0.29 1.82 16 35 H 0.43 4.47 6.90 -40.82 -0.28 4.19 16 36 H 0.41 7.41 8.03 -40.82 -0.33 7.08 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.28 6.73 -51.92 -0.35 0.93 16 40 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -31.72 347.37 -5.66 -37.38 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -3.57 Total: 10.42 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.63 Total: 5.50 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.44 Total: -45.27 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.68 Total: -29.09 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.45 Total: 15.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.72 -5.66 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610438893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.785 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds