Wall clock time and date at job start Tue Mar 31 2020 12:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38019 * 120.00230 * 2 1 4 4 C 1.38207 * 120.23633 * 180.25762 * 3 2 1 5 5 C 1.39054 * 120.22515 * 359.48742 * 4 3 2 6 6 N 1.39755 * 120.00256 * 180.23057 * 5 4 3 7 7 C 1.34774 * 120.00033 * 148.79553 * 6 5 4 8 8 O 1.21378 * 120.00238 * 354.21606 * 7 6 5 9 9 C 1.49355 * 120.00371 * 174.21293 * 7 6 5 10 10 O 1.21364 * 119.99810 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00435 * 180.02562 * 9 7 6 12 12 C 1.46499 * 120.00331 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47344 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47018 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00570 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99875 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47008 * 59.99657 * 18 16 14 20 20 H 1.48495 * 109.46844 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46972 * 299.99489 * 18 16 14 22 22 C 1.38643 * 119.99594 * 0.25845 * 5 4 3 23 23 C 1.39536 * 119.76793 * 359.97438 * 22 5 4 24 24 C 1.47738 * 120.11193 * 180.02562 * 23 22 5 25 25 O 1.21473 * 119.99814 * 173.71775 * 24 23 22 26 26 O 1.34708 * 120.00505 * 353.72317 * 24 23 22 27 27 H 1.08999 * 109.47207 * 262.71855 * 1 2 3 28 28 H 1.08998 * 109.46795 * 22.71419 * 1 2 3 29 29 H 1.08999 * 109.47291 * 142.71438 * 1 2 3 30 30 H 1.08000 * 119.88150 * 0.02562 * 3 2 1 31 31 H 1.07998 * 119.88869 * 179.76830 * 4 3 2 32 32 H 0.97001 * 119.99954 * 328.80608 * 6 5 4 33 33 H 0.97002 * 120.00013 * 0.02562 * 11 9 7 34 34 H 1.09007 * 109.46914 * 299.99862 * 12 11 9 35 35 H 1.09005 * 109.47187 * 59.99316 * 12 11 9 36 36 H 1.08993 * 109.47494 * 299.99524 * 13 12 11 37 37 H 1.08997 * 109.47269 * 60.00013 * 13 12 11 38 38 H 0.96993 * 119.99969 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.11658 * 179.97438 * 22 5 4 40 40 H 0.96697 * 117.00454 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1953 0.0000 4 6 3.5792 1.2009 -0.0054 5 6 4.2841 0.0023 -0.0001 6 7 5.6816 0.0135 -0.0007 7 6 6.3637 -0.9766 0.6084 8 8 5.7685 -1.8204 1.2464 9 6 7.8520 -1.0357 0.4983 10 8 8.4473 -0.1918 -0.1393 11 7 8.5340 -2.0260 1.1069 12 6 9.9939 -2.0836 0.9994 13 6 10.5152 -3.2945 1.7758 14 6 12.0169 -3.3540 1.6646 15 1 12.5466 -2.6031 1.0973 16 6 12.7146 -4.3673 2.2872 17 7 12.0697 -5.2815 2.9784 18 14 14.5761 -4.4407 2.1499 19 1 15.1635 -3.2000 2.7163 20 1 15.0820 -5.6161 2.9034 21 1 14.9627 -4.5642 0.7215 22 6 3.6005 -1.2039 0.0052 23 6 2.2051 -1.2093 0.0058 24 6 1.4690 -2.4902 0.0120 25 8 0.2598 -2.4952 0.1275 26 8 2.1386 -3.6526 -0.1104 27 1 -0.3633 -0.1302 1.0194 28 1 -0.3633 0.9480 -0.3968 29 1 -0.3634 -0.8176 -0.6225 30 1 1.6552 2.1295 0.0004 31 1 4.1135 2.1394 -0.0091 32 1 6.1607 0.7339 -0.4393 33 1 8.0583 -2.7007 1.6162 34 1 10.2777 -2.1743 -0.0492 35 1 10.4251 -1.1728 1.4150 36 1 10.2315 -3.2034 2.8242 37 1 10.0841 -4.2054 1.3605 38 1 12.5605 -5.9941 3.4167 39 1 4.1460 -2.1360 0.0090 40 1 1.6138 -4.4647 -0.1013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610506054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:06 Heat of formation + Delta-G solvation = -137.261475 kcal Electronic energy + Delta-G solvation = -25387.382009 eV Core-core repulsion = 21360.106607 eV Total energy + Delta-G solvation = -4027.275403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33437 -40.56510 -39.26136 -38.23062 -36.49821 -35.71067 -34.88459 -32.92170 -31.88814 -31.78869 -29.90337 -27.49594 -25.65153 -24.93335 -23.76975 -22.64511 -21.28795 -20.95005 -20.30393 -19.00577 -18.16999 -17.80056 -16.86000 -16.38673 -16.21268 -16.10564 -15.85744 -15.52359 -15.34887 -14.89228 -14.54584 -14.37662 -14.12782 -13.84413 -13.58463 -13.57585 -13.09866 -12.70939 -12.50532 -12.35667 -12.26430 -12.15131 -11.76632 -11.50131 -11.29009 -11.08570 -10.72705 -10.70414 -10.48076 -10.44957 -9.88840 -9.57137 -9.45569 -9.29305 -8.80782 -8.46624 -8.44219 -6.13535 -4.17604 0.27993 0.77969 1.47282 2.19388 2.27022 2.72482 3.15761 3.28246 3.32735 3.35006 3.41712 3.62982 4.31113 4.36928 4.51698 4.55555 4.57581 4.77720 4.96573 5.03105 5.23322 5.36853 5.44893 5.46810 5.62964 5.74391 5.86272 5.91541 6.09272 6.11470 6.16437 6.27852 6.45485 6.48991 6.60776 6.79679 7.35270 7.49560 7.52363 7.61326 7.72084 7.82841 8.09863 8.24069 8.87676 9.47489 10.97846 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.002203 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.951881 B =12705.956521 C =13701.291493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.034 4.034 3 C -0.113 4.113 4 C -0.100 4.100 5 C 0.128 3.872 6 N -0.649 5.649 7 C 0.508 3.492 8 O -0.495 6.495 9 C 0.500 3.500 10 O -0.529 6.529 11 N -0.682 5.682 12 C 0.118 3.882 13 C 0.011 3.989 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.061 4.061 23 C -0.115 4.115 24 C 0.529 3.471 25 O -0.510 6.510 26 O -0.507 6.507 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.425 0.575 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.155 0.845 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.704 11.312 -7.098 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.035 4.035 3 C -0.132 4.132 4 C -0.121 4.121 5 C 0.034 3.966 6 N -0.296 5.296 7 C 0.290 3.710 8 O -0.368 6.368 9 C 0.279 3.721 10 O -0.407 6.407 11 N -0.332 5.332 12 C -0.003 4.003 13 C -0.026 4.026 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.530 5.530 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.082 4.082 23 C -0.116 4.116 24 C 0.375 3.625 25 O -0.401 6.401 26 O -0.318 6.318 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.264 0.736 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.172 0.828 40 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -22.644 11.437 -6.944 26.301 hybrid contribution 0.805 -0.626 0.093 1.024 sum -21.839 10.811 -6.852 25.313 Atomic orbital electron populations 1.21086 0.89707 1.03144 1.03742 1.20033 0.97004 0.91157 0.95307 1.20808 0.93123 0.97600 1.01635 1.21201 0.94529 0.96838 0.99512 1.17605 0.82512 0.93972 1.02516 1.43169 1.04281 1.27410 1.54724 1.20723 0.89502 0.81690 0.79040 1.90794 1.70290 1.37898 1.37829 1.19681 0.86850 0.83670 0.81878 1.90758 1.69756 1.39058 1.41125 1.46249 1.10098 1.27110 1.49787 1.21989 0.74624 1.01987 1.01725 1.19355 0.96594 0.91221 0.95471 1.20961 0.91042 1.11434 1.32937 0.92190 1.25005 0.98892 0.95404 0.94954 1.69943 1.35958 1.14151 1.32966 0.86545 0.84969 0.77563 0.78299 1.20091 1.21220 1.20081 1.21532 0.92788 0.98749 0.95092 1.18717 0.92780 0.90193 1.09954 1.20790 0.85225 0.84355 0.72173 1.90846 1.15150 1.87771 1.46307 1.84612 1.45291 1.17039 1.84888 0.90436 0.91892 0.89106 0.84333 0.84497 0.73632 0.75252 0.91667 0.91684 0.95627 0.95615 0.92667 0.82764 0.72603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 8.68 36.01 0.31 -0.64 16 2 C -0.03 -0.31 5.92 -104.18 -0.62 -0.92 16 3 C -0.11 -0.82 9.65 -39.67 -0.38 -1.21 16 4 C -0.10 -0.78 9.95 -39.29 -0.39 -1.17 16 5 C 0.13 1.33 6.31 -83.79 -0.53 0.80 16 6 N -0.65 -7.00 5.33 -10.33 -0.06 -7.06 16 7 C 0.51 7.00 7.63 -11.63 -0.09 6.91 16 8 O -0.50 -7.67 14.04 5.47 0.08 -7.59 16 9 C 0.50 7.95 7.89 -11.63 -0.09 7.86 16 10 O -0.53 -9.26 16.49 5.48 0.09 -9.17 16 11 N -0.68 -11.64 5.55 -60.76 -0.34 -11.98 16 12 C 0.12 2.35 5.61 -4.05 -0.02 2.33 16 13 C 0.01 0.27 5.09 -27.89 -0.14 0.12 16 14 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 C -0.06 -0.71 8.23 -38.95 -0.32 -1.03 16 23 C -0.11 -1.24 5.87 -105.01 -0.62 -1.86 16 24 C 0.53 5.74 8.20 34.61 0.28 6.02 16 25 O -0.51 -6.11 14.14 -19.25 -0.27 -6.39 16 26 O -0.51 -4.62 12.70 -40.51 -0.51 -5.14 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.36 8.03 -51.93 -0.42 -0.06 16 29 H 0.09 0.84 5.92 -51.93 -0.31 0.53 16 30 H 0.14 0.62 8.05 -52.49 -0.42 0.20 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.43 3.77 8.29 -40.82 -0.34 3.43 16 33 H 0.41 6.67 7.94 -40.82 -0.32 6.35 16 34 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.15 2.02 5.84 -52.48 -0.31 1.71 16 40 H 0.42 1.81 9.11 45.56 0.42 2.22 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -32.89 353.97 -6.76 -39.65 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -3.78 Total: 7.06 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.02 Total: 4.33 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.34 Total: -44.03 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.62 Total: -28.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.89 -6.76 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610506054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.616 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds