Wall clock time and date at job start Tue Mar 31 2020 13:03:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 110.46553 * 2 1
4 4 O 1.45707 * 110.51752 * 122.77891 * 2 1 3
5 5 C 1.33776 * 109.47405 * 118.63485 * 4 2 1
6 6 O 1.21511 * 123.06949 * 180.02562 * 5 4 2
7 7 N 1.33999 * 113.85534 * 359.97438 * 5 4 2
8 8 C 1.47088 * 108.88524 * 0.02562 * 7 5 4
9 9 H 1.09001 * 110.69471 * 118.63327 * 8 7 5
10 10 C 1.50708 * 110.56735 * 241.42905 * 8 7 5
11 11 O 1.21284 * 119.99604 * 14.35079 * 10 8 7
12 12 N 1.34773 * 120.00076 * 194.35640 * 10 8 7
13 13 C 1.46499 * 119.99794 * 179.97438 * 12 10 8
14 14 C 1.50700 * 109.47346 * 179.97438 * 13 12 10
15 15 C 1.38322 * 119.96719 * 270.02687 * 14 13 12
16 16 C 1.38278 * 120.13633 * 179.97438 * 15 14 13
17 17 C 1.38118 * 120.07181 * 359.95648 * 16 15 14
18 18 C 1.38858 * 119.92982 * 359.79003 * 17 16 15
19 19 O 1.35746 * 120.07001 * 180.25798 * 18 17 16
20 20 C 1.34828 * 117.00147 * 354.70705 * 19 18 17
21 21 H 1.08005 * 120.00113 * 5.07860 * 20 19 18
22 22 C 1.38658 * 120.00325 * 185.07820 * 20 19 18
23 23 N 1.31561 * 119.99899 * 0.02562 * 22 20 19
24 24 Si 1.86795 * 120.00050 * 180.02562 * 22 20 19
25 25 H 1.48504 * 109.47494 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.47024 * 119.99903 * 24 22 20
27 27 H 1.48503 * 109.47222 * 240.00178 * 24 22 20
28 28 C 1.38077 * 119.96071 * 89.99823 * 14 13 12
29 29 H 1.08993 * 109.46862 * 182.63325 * 1 2 3
30 30 H 1.09003 * 109.47130 * 302.63192 * 1 2 3
31 31 H 1.09004 * 109.47042 * 62.63054 * 1 2 3
32 32 H 0.97001 * 125.55623 * 180.02562 * 7 5 4
33 33 H 0.96996 * 120.00191 * 359.97438 * 12 10 8
34 34 H 1.09000 * 109.47248 * 59.99853 * 13 12 10
35 35 H 1.09000 * 109.47468 * 300.00066 * 13 12 10
36 36 H 1.07998 * 119.93355 * 359.97032 * 15 14 13
37 37 H 1.08005 * 119.96142 * 179.97438 * 16 15 14
38 38 H 1.08004 * 120.03434 * 180.02562 * 17 16 15
39 39 H 0.97001 * 120.00026 * 179.97438 * 23 22 20
40 40 H 1.08000 * 120.04007 * 0.02562 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9111 1.0212 0.0000
4 8 2.0407 -0.7388 1.1473
5 6 2.7631 -1.7810 0.7211
6 8 3.3049 -2.5649 1.4751
7 7 2.8337 -1.8819 -0.6132
8 6 2.0700 -0.7784 -1.2152
9 1 2.7198 -0.1443 -1.8183
10 6 0.9337 -1.3135 -2.0482
11 8 0.5972 -2.4738 -1.9409
12 7 0.2915 -0.5027 -2.9123
13 6 -0.8127 -1.0231 -3.7223
14 6 -1.3552 0.0769 -4.5980
15 6 -2.3788 0.8852 -4.1374
16 6 -2.8789 1.8959 -4.9378
17 6 -2.3567 2.1019 -6.1997
18 6 -1.3255 1.2955 -6.6629
19 8 -0.8066 1.4988 -7.9007
20 6 -1.4086 2.4265 -8.6720
21 1 -2.2111 3.0262 -8.2684
22 6 -0.9976 2.6105 -9.9834
23 7 -0.0205 1.8797 -10.4753
24 14 -1.8312 3.8963 -11.0517
25 1 -2.8917 4.5792 -10.2680
26 1 -0.8269 4.8944 -11.4995
27 1 -2.4373 3.2378 -12.2368
28 6 -0.8294 0.2772 -5.8589
29 1 -0.3633 -1.0265 0.0472
30 1 -0.3633 0.5542 0.8655
31 1 -0.3633 0.4725 -0.9127
32 1 3.3107 -2.5705 -1.1023
33 1 0.5605 0.4253 -2.9978
34 1 -1.6033 -1.3886 -3.0670
35 1 -0.4516 -1.8403 -4.3467
36 1 -2.7884 0.7266 -3.1508
37 1 -3.6785 2.5251 -4.5755
38 1 -2.7475 2.8917 -6.8242
39 1 0.2668 2.0082 -11.3928
40 1 -0.0302 -0.3542 -6.2180
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001649836318.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:03:54
Heat of formation + Delta-G solvation = -129.822314 kcal
Electronic energy + Delta-G solvation = -26032.842414 eV
Core-core repulsion = 22005.889598 eV
Total energy + Delta-G solvation = -4026.952817 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.125 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.06218 -40.98222 -40.44131 -38.56687 -38.36135 -35.97150 -35.72850 -34.27489
-33.32586 -32.01454 -30.74331 -28.50861 -27.43348 -26.52953 -24.23757 -23.46764
-23.21700 -22.41154 -21.64222 -19.71762 -19.34014 -19.04679 -18.49919 -17.79960
-17.34291 -17.02579 -16.70281 -16.65325 -16.15269 -16.05703 -15.78148 -15.55723
-15.39011 -15.14478 -14.78031 -14.59029 -14.29597 -14.00414 -13.87478 -13.63834
-13.36629 -13.08971 -13.01116 -12.61870 -12.54641 -12.34611 -12.23378 -12.07977
-12.04385 -11.93601 -11.53035 -11.18013 -10.80963 -10.45280 -10.17117 -9.71086
-8.99606 -8.46124 -6.13948 0.40277 0.74610 1.30852 1.37271 1.39527
1.44675 1.54487 1.59988 2.02014 2.18080 2.51571 2.86100 2.97535
3.16601 3.39810 3.45085 3.71013 3.81308 3.87954 4.13337 4.20680
4.23807 4.34496 4.45023 4.56629 4.70041 4.71265 4.76824 4.78457
5.05355 5.14225 5.15383 5.26583 5.30006 5.62634 5.66181 5.74038
5.76184 6.03700 6.06693 6.20694 6.41861 6.87778 6.99645 7.06959
7.80469 8.77072
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.026005 B = 0.002369 C = 0.002286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1076.441607 B =11816.648901 C =12247.825014
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.080 3.920
3 H 0.178 0.822
4 O -0.333 6.333
5 C 0.649 3.351
6 O -0.571 6.571
7 N -0.702 5.702
8 C 0.079 3.921
9 H 0.175 0.825
10 C 0.512 3.488
11 O -0.568 6.568
12 N -0.701 5.701
13 C 0.174 3.826
14 C -0.057 4.057
15 C -0.164 4.164
16 C -0.070 4.070
17 C -0.235 4.235
18 C 0.110 3.890
19 O -0.233 6.233
20 C -0.409 4.409
21 H 0.103 0.897
22 C -0.023 4.023
23 N -0.921 5.921
24 Si 1.015 2.985
25 H -0.250 1.250
26 H -0.270 1.270
27 H -0.272 1.272
28 C -0.179 4.179
29 H 0.044 0.956
30 H 0.095 0.905
31 H 0.109 0.891
32 H 0.444 0.556
33 H 0.419 0.581
34 H 0.090 0.910
35 H 0.063 0.937
36 H 0.152 0.848
37 H 0.146 0.854
38 H 0.117 0.883
39 H 0.271 0.729
40 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.759 2.781 17.114 17.355
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.025 3.975
3 H 0.195 0.805
4 O -0.243 6.243
5 C 0.402 3.598
6 O -0.459 6.459
7 N -0.373 5.373
8 C -0.030 4.030
9 H 0.192 0.808
10 C 0.297 3.703
11 O -0.446 6.446
12 N -0.354 5.354
13 C 0.051 3.949
14 C -0.058 4.058
15 C -0.183 4.183
16 C -0.088 4.088
17 C -0.255 4.255
18 C 0.060 3.940
19 O -0.140 6.140
20 C -0.485 4.485
21 H 0.121 0.879
22 C -0.221 4.221
23 N -0.559 5.559
24 Si 0.835 3.165
25 H -0.173 1.173
26 H -0.195 1.195
27 H -0.198 1.198
28 C -0.199 4.199
29 H 0.063 0.937
30 H 0.114 0.886
31 H 0.127 0.873
32 H 0.288 0.712
33 H 0.257 0.743
34 H 0.108 0.892
35 H 0.082 0.918
36 H 0.170 0.830
37 H 0.164 0.836
38 H 0.134 0.866
39 H 0.080 0.920
40 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -0.577 1.627 17.604 17.689
hybrid contribution 0.146 0.224 -1.536 1.559
sum -0.431 1.851 16.068 16.180
Atomic orbital electron populations
1.22403 0.91474 1.03217 1.06263 1.24349 0.97126 0.97683 0.78304
0.80510 1.87318 1.63431 1.38924 1.34660 1.18545 0.77854 0.80531
0.82896 1.91041 1.51516 1.44065 1.59324 1.45665 1.54187 1.32312
1.05161 1.22790 0.93695 0.89710 0.96828 0.80805 1.20767 0.83496
0.85937 0.80094 1.90778 1.66800 1.19026 1.68007 1.45978 1.34463
1.15020 1.39964 1.20047 0.89271 0.93333 0.92228 1.19394 0.96913
0.96969 0.92516 1.21009 0.98848 0.97105 1.01323 1.21160 0.98436
0.97322 0.91912 1.21379 1.01224 1.03512 0.99361 1.19892 0.93167
0.94584 0.86320 1.83943 1.52327 1.55438 1.22281 1.21828 1.18619
1.14388 0.93650 0.87929 1.26529 0.97267 1.00753 0.97506 1.70183
1.28440 1.40948 1.16368 0.84564 0.78099 0.76400 0.77413 1.17287
1.19489 1.19768 1.20239 1.04577 0.99533 0.95523 0.93721 0.88644
0.87257 0.71182 0.74276 0.89215 0.91816 0.82990 0.83583 0.86569
0.91952 0.87359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.69 8.47 71.98 0.61 -1.08 16
2 C 0.08 0.74 4.50 30.96 0.14 0.88 16
3 H 0.18 0.06 8.14 -2.39 -0.02 0.04 16
4 O -0.33 -6.52 10.80 -47.36 -0.51 -7.03 16
5 C 0.65 15.63 9.16 129.91 1.19 16.82 16
6 O -0.57 -18.98 18.04 19.65 0.35 -18.62 16
7 N -0.70 -11.94 5.63 -573.42 -3.23 -15.16 16
8 C 0.08 0.84 4.18 44.50 0.19 1.03 16
9 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16
10 C 0.51 8.58 5.09 87.66 0.45 9.03 16
11 O -0.57 -15.09 16.50 -3.04 -0.05 -15.14 16
12 N -0.70 -10.05 4.32 -466.78 -2.01 -12.07 16
13 C 0.17 3.49 5.80 85.63 0.50 3.99 16
14 C -0.06 -1.44 5.25 -19.88 -0.10 -1.55 16
15 C -0.16 -3.66 9.70 22.30 0.22 -3.44 16
16 C -0.07 -1.88 10.04 22.25 0.22 -1.66 16
17 C -0.24 -8.77 9.17 22.39 0.21 -8.56 16
18 C 0.11 4.84 6.65 22.58 0.15 4.99 16
19 O -0.23 -12.97 9.76 -22.68 -0.22 -13.19 16
20 C -0.41 -22.27 9.49 67.92 0.64 -21.62 16
21 H 0.10 5.08 5.20 -2.91 -0.02 5.07 16
22 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16
23 N -0.92 -54.34 13.67 21.61 0.30 -54.04 16
24 Si 1.02 40.67 29.55 68.60 2.03 42.69 16
25 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16
26 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16
27 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16
28 C -0.18 -6.35 9.65 22.39 0.22 -6.14 16
29 H 0.04 0.72 7.51 -2.39 -0.02 0.70 16
30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
31 H 0.11 0.68 6.56 -2.38 -0.02 0.66 16
32 H 0.44 6.87 8.96 -92.71 -0.83 6.04 16
33 H 0.42 3.96 8.40 -92.71 -0.78 3.18 16
34 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16
35 H 0.06 1.50 8.08 -2.39 -0.02 1.48 16
36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16
37 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16
38 H 0.12 4.53 5.64 -2.91 -0.02 4.51 16
39 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16
40 H 0.11 3.98 8.06 -2.91 -0.02 3.95 16
Total: -1.00 -82.59 347.55 1.25 -81.35
By element:
Atomic # 1 Polarization: 19.80 SS G_CDS: -0.49 Total: 19.31 kcal
Atomic # 6 Polarization: -13.18 SS G_CDS: 5.08 Total: -8.10 kcal
Atomic # 7 Polarization: -76.32 SS G_CDS: -4.95 Total: -81.27 kcal
Atomic # 8 Polarization: -53.55 SS G_CDS: -0.43 Total: -53.98 kcal
Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal
Total: -82.59 1.25 -81.35 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001649836318.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.476 kcal
(2) G-P(sol) polarization free energy of solvation -82.592 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.068 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.346 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds