Wall clock time and date at job start Tue Mar 31 2020 13:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.57937 * 2 1 4 4 O 1.45704 * 110.51949 * 237.29467 * 2 1 3 5 5 C 1.33773 * 109.47907 * 241.36724 * 4 2 1 6 6 O 1.21511 * 123.07107 * 180.02562 * 5 4 2 7 7 N 1.34320 * 113.90272 * 0.09056 * 5 4 2 8 8 C 1.47096 * 108.70252 * 359.86074 * 7 5 4 9 9 H 1.09000 * 110.56797 * 118.77659 * 8 7 5 10 10 C 1.50703 * 110.56316 * 241.47930 * 8 7 5 11 11 O 1.21280 * 120.00323 * 16.56169 * 10 8 7 12 12 N 1.34780 * 120.00031 * 196.55799 * 10 8 7 13 13 C 1.46500 * 119.99854 * 180.02562 * 12 10 8 14 14 C 1.50708 * 109.46711 * 179.97438 * 13 12 10 15 15 C 1.38319 * 119.96373 * 270.02064 * 14 13 12 16 16 C 1.38286 * 120.13936 * 179.97438 * 15 14 13 17 17 C 1.38122 * 120.06463 * 359.74846 * 16 15 14 18 18 C 1.38860 * 119.92890 * 0.50250 * 17 16 15 19 19 O 1.35749 * 120.06624 * 179.77454 * 18 17 16 20 20 C 1.34833 * 117.00151 * 5.23519 * 19 18 17 21 21 H 1.07995 * 120.00018 * 354.92143 * 20 19 18 22 22 C 1.38660 * 120.00010 * 174.92297 * 20 19 18 23 23 N 1.31552 * 120.00127 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99792 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46938 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.47007 * 299.99977 * 24 22 20 27 27 H 1.48501 * 109.46927 * 60.00036 * 24 22 20 28 28 C 1.38070 * 119.96362 * 89.99878 * 14 13 12 29 29 H 1.09004 * 109.47326 * 297.29238 * 1 2 3 30 30 H 1.09004 * 109.47482 * 57.29278 * 1 2 3 31 31 H 1.09000 * 109.47381 * 177.28971 * 1 2 3 32 32 H 0.96994 * 125.73787 * 179.97438 * 7 5 4 33 33 H 0.97002 * 119.99897 * 359.97438 * 12 10 8 34 34 H 1.08997 * 109.47401 * 60.00127 * 13 12 10 35 35 H 1.08998 * 109.46851 * 299.99572 * 13 12 10 36 36 H 1.08000 * 119.93240 * 0.02562 * 15 14 13 37 37 H 1.07995 * 119.96948 * 179.97438 * 16 15 14 38 38 H 1.08002 * 120.03313 * 180.27846 * 17 16 15 39 39 H 0.97007 * 120.00011 * 359.97438 * 23 22 20 40 40 H 1.07995 * 120.04025 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 8 2.0407 -0.7373 -1.1483 5 6 2.7630 -1.7800 -0.7235 6 8 3.3056 -2.5624 -1.4784 7 7 2.8333 -1.8848 0.6138 8 6 2.0701 -0.7799 1.2142 9 1 1.2486 -1.1656 1.8179 10 6 2.9715 0.0950 2.0469 11 8 4.1749 0.0284 1.9118 12 7 2.4403 0.9515 2.9417 13 6 3.3165 1.8024 3.7507 14 6 2.4796 2.6608 4.6639 15 6 2.0481 3.9045 4.2394 16 6 1.2796 4.6950 5.0741 17 6 0.9361 4.2422 6.3330 18 6 1.3722 2.9963 6.7640 19 8 1.0401 2.5504 8.0024 20 6 0.1961 3.3163 8.7228 21 1 -0.1189 4.2770 8.3431 22 6 -0.2675 2.8705 9.9512 23 7 0.1165 1.7005 10.4140 24 14 -1.4374 3.9314 10.9489 25 1 -1.7812 3.2340 12.2141 26 1 -0.7855 5.2286 11.2608 27 1 -2.6751 4.1751 10.1653 28 6 2.1440 2.2047 5.9231 29 1 -0.3634 0.4712 0.9133 30 1 -0.3634 0.5553 -0.8647 31 1 -0.3634 -1.0265 -0.0486 32 1 3.3094 -2.5732 1.1039 33 1 1.4778 1.0051 3.0495 34 1 3.9095 2.4404 3.0954 35 1 3.9806 1.1768 4.3471 36 1 2.3113 4.2587 3.2536 37 1 0.9445 5.6658 4.7400 38 1 0.3321 4.8581 6.9828 39 1 0.7237 1.1495 9.8958 40 1 2.4813 1.2336 6.2540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649836443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:01 Heat of formation + Delta-G solvation = -113.779129 kcal Electronic energy + Delta-G solvation = -25862.668569 eV Core-core repulsion = 21836.411437 eV Total energy + Delta-G solvation = -4026.257132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24335 -39.88889 -39.21803 -37.59663 -37.10160 -35.10933 -34.85843 -32.59447 -32.42039 -31.07323 -29.33631 -27.91214 -25.80900 -24.77531 -23.39324 -22.67081 -21.94887 -21.13720 -21.04844 -18.85411 -18.23263 -17.87186 -17.51670 -16.93810 -16.42936 -15.95777 -15.63817 -15.21680 -15.15942 -15.03375 -14.91371 -14.27882 -14.03486 -13.90225 -13.82840 -13.74905 -13.41573 -13.30190 -12.67877 -12.66069 -12.43728 -12.14015 -11.58964 -11.26632 -11.23587 -11.09306 -11.03112 -10.94194 -10.68724 -10.46813 -10.39362 -9.69812 -9.58923 -9.37663 -8.93663 -8.46331 -7.54410 -6.91747 -4.22296 1.63120 2.01642 2.05850 2.20336 2.37083 2.78323 3.14621 3.16891 3.20199 3.35777 3.54204 3.98061 4.02084 4.09791 4.32549 4.37104 4.60471 4.69566 4.76897 4.98364 5.02955 5.09239 5.18833 5.29402 5.49813 5.50417 5.61526 5.66391 5.87846 6.02839 6.07577 6.33134 6.37145 6.58079 6.82486 6.85739 6.96773 7.08503 7.12965 7.37908 7.46678 7.70125 7.78890 8.23897 8.75466 9.42509 10.51923 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.002376 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.239348 B =11782.907927 C =11977.471733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 H 0.120 0.880 4 O -0.319 6.319 5 C 0.652 3.348 6 O -0.518 6.518 7 N -0.710 5.710 8 C 0.078 3.922 9 H 0.129 0.871 10 C 0.500 3.500 11 O -0.522 6.522 12 N -0.711 5.711 13 C 0.168 3.832 14 C -0.075 4.075 15 C -0.194 4.194 16 C -0.075 4.075 17 C -0.220 4.220 18 C 0.153 3.847 19 O -0.199 6.199 20 C -0.474 4.474 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.877 5.877 24 Si 1.095 2.905 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.281 1.281 28 C -0.173 4.173 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.441 0.559 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.283 0.717 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -0.243 -15.455 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 H 0.138 0.862 4 O -0.230 6.230 5 C 0.404 3.596 6 O -0.403 6.403 7 N -0.383 5.383 8 C -0.033 4.033 9 H 0.146 0.854 10 C 0.283 3.717 11 O -0.397 6.397 12 N -0.363 5.363 13 C 0.045 3.955 14 C -0.076 4.076 15 C -0.213 4.213 16 C -0.093 4.093 17 C -0.240 4.240 18 C 0.099 3.901 19 O -0.103 6.103 20 C -0.550 4.550 21 H 0.102 0.898 22 C -0.194 4.194 23 N -0.508 5.508 24 Si 0.919 3.081 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.207 1.207 28 C -0.193 4.193 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.285 0.715 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.424 -0.682 -14.677 14.762 hybrid contribution 0.627 -0.030 -0.885 1.085 sum -0.797 -0.712 -15.562 15.599 Atomic orbital electron populations 1.22189 0.90659 1.04455 1.04774 1.23813 0.96950 0.96520 0.80167 0.86183 1.87339 1.63985 1.39025 1.32621 1.18496 0.78044 0.80631 0.82418 1.91090 1.48864 1.42478 1.57828 1.45725 1.56488 1.30141 1.05948 1.22447 0.95275 0.89072 0.96463 0.85356 1.20515 0.89214 0.81134 0.80881 1.90781 1.14625 1.67243 1.67063 1.46128 1.11278 1.39949 1.38993 1.20228 0.91347 0.91829 0.92073 1.19202 0.99431 0.95070 0.93906 1.20492 1.05170 0.95541 1.00127 1.20778 0.96604 0.98417 0.93496 1.21279 1.07039 0.97777 0.97896 1.19172 0.93279 0.92135 0.85496 1.83667 1.57448 1.47622 1.21575 1.22217 1.26611 1.02651 1.03483 0.89769 1.26573 0.99811 0.98796 0.94223 1.70586 1.30567 1.09687 1.39953 0.83115 0.74691 0.74207 0.76126 1.19690 1.20646 1.20651 1.20056 1.05074 1.00529 0.93667 0.89131 0.89857 0.90802 0.71536 0.75916 0.90525 0.90536 0.87333 0.87076 0.85288 0.90736 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 9.46 37.15 0.35 -0.32 16 2 C 0.08 0.56 4.14 -26.17 -0.11 0.45 16 3 H 0.12 0.73 7.72 -51.93 -0.40 0.33 16 4 O -0.32 -3.47 10.80 -37.84 -0.41 -3.88 16 5 C 0.65 8.14 9.16 53.85 0.49 8.64 16 6 O -0.52 -8.45 18.04 -19.12 -0.34 -8.80 16 7 N -0.71 -6.67 5.67 -59.27 -0.34 -7.00 16 8 C 0.08 0.56 3.81 -68.19 -0.26 0.30 16 9 H 0.13 0.53 7.73 -51.93 -0.40 0.13 16 10 C 0.50 5.03 6.94 -10.98 -0.08 4.96 16 11 O -0.52 -7.50 16.58 5.56 0.09 -7.41 16 12 N -0.71 -6.63 5.55 -61.47 -0.34 -6.97 16 13 C 0.17 1.98 5.80 -5.19 -0.03 1.95 16 14 C -0.08 -1.08 5.25 -104.65 -0.55 -1.63 16 15 C -0.19 -2.72 9.70 -39.53 -0.38 -3.10 16 16 C -0.07 -1.17 10.04 -39.61 -0.40 -1.57 16 17 C -0.22 -4.27 9.17 -39.39 -0.36 -4.63 16 18 C 0.15 3.28 6.65 -39.11 -0.26 3.02 16 19 O -0.20 -5.18 9.16 0.04 0.00 -5.17 16 20 C -0.47 -12.45 9.49 30.89 0.29 -12.15 16 21 H 0.08 2.06 5.20 -52.49 -0.27 1.79 16 22 C 0.01 0.32 5.49 -17.52 -0.10 0.22 16 23 N -0.88 -24.91 13.70 55.48 0.76 -24.15 16 24 Si 1.09 22.25 29.92 -169.99 -5.09 17.17 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 27 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.17 -3.10 9.65 -39.40 -0.38 -3.48 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.44 3.62 8.96 -40.82 -0.37 3.26 16 33 H 0.41 2.97 8.46 -40.82 -0.35 2.62 16 34 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 39 H 0.28 8.19 7.97 -40.82 -0.33 7.86 16 40 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -34.27 351.92 -6.70 -40.98 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.58 Total: 7.27 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.76 Total: -7.33 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.08 Total: -38.12 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.66 Total: -25.26 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.09 Total: 17.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.27 -6.70 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649836443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.804 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds