Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81394 * 102.99918 * 2 1 4 4 C 1.53006 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.53000 * 115.54567 * 61.43154 * 4 3 2 6 6 C 1.50696 * 109.47550 * 66.24330 * 5 4 3 7 7 O 1.20823 * 120.00053 * 5.99358 * 6 5 4 8 8 O 1.34228 * 120.00324 * 185.99297 * 6 5 4 9 9 C 1.45198 * 117.00309 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47425 * 179.97438 * 9 8 6 11 11 C 1.38641 * 119.75010 * 269.73285 * 10 9 8 12 12 C 1.37614 * 120.24729 * 179.71790 * 11 10 9 13 13 C 1.40719 * 119.74319 * 0.57397 * 12 11 10 14 14 C 1.41397 * 120.24448 * 179.68418 * 13 12 11 15 15 H 1.07999 * 119.99943 * 206.56461 * 14 13 12 16 16 C 1.39945 * 119.99923 * 26.55442 * 14 13 12 17 17 N 1.30820 * 120.00111 * 14.90466 * 16 14 13 18 18 Si 1.86804 * 119.99998 * 194.90180 * 16 14 13 19 19 H 1.48497 * 109.47343 * 90.00035 * 18 16 14 20 20 H 1.48496 * 109.47248 * 210.00799 * 18 16 14 21 21 H 1.48507 * 109.47015 * 330.00330 * 18 16 14 22 22 C 1.40718 * 119.51068 * 359.69745 * 13 12 11 23 23 C 1.37612 * 119.74791 * 0.02562 * 22 13 12 24 24 C 1.52993 * 117.50235 * 275.76049 * 4 3 2 25 25 C 1.53002 * 117.49951 * 207.09625 * 4 3 2 26 26 H 1.08995 * 109.46920 * 299.99514 * 1 2 3 27 27 H 1.09003 * 109.47225 * 59.99791 * 1 2 3 28 28 H 1.09002 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47357 * 299.99652 * 3 2 1 30 30 H 1.09000 * 109.46903 * 60.00148 * 3 2 1 31 31 H 1.09003 * 109.46784 * 186.24235 * 5 4 3 32 32 H 1.09003 * 109.47422 * 306.24057 * 5 4 3 33 33 H 1.08990 * 109.47406 * 300.00337 * 9 8 6 34 34 H 1.09006 * 109.46681 * 60.00425 * 9 8 6 35 35 H 1.07997 * 119.87278 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.13126 * 180.27586 * 12 11 10 37 37 H 0.96996 * 120.00070 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.12193 * 179.97438 * 22 13 12 39 39 H 1.07993 * 119.87669 * 179.97438 * 23 22 13 40 40 H 1.09007 * 117.49462 * 359.97438 * 24 4 3 41 41 H 1.08992 * 117.50236 * 145.02156 * 24 4 3 42 42 H 1.08994 * 117.49832 * 214.98090 * 25 4 3 43 43 H 1.08999 * 117.49667 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.4729 1.3582 -1.2113 6 6 4.0846 2.1264 -2.4483 7 8 3.3901 3.1106 -2.3551 8 8 4.5103 1.7172 -3.6537 9 6 4.0971 2.5051 -4.8012 10 6 4.6664 1.8991 -6.0581 11 6 5.9074 2.3107 -6.5192 12 6 6.4396 1.7600 -7.6626 13 6 5.7138 0.7844 -8.3708 14 6 6.2475 0.2164 -9.5505 15 1 5.5856 -0.1756 -10.3085 16 6 7.6336 0.1623 -9.7360 17 7 8.4373 0.3593 -8.7228 18 14 8.3361 -0.1912 -11.4304 19 1 8.5384 1.0869 -12.1590 20 1 9.6375 -0.8925 -11.2903 21 1 7.3907 -1.0491 -12.1891 22 6 4.4527 0.3785 -7.8964 23 6 3.9426 0.9387 -6.7476 24 6 4.4591 1.8843 1.3511 25 6 4.3079 3.2201 0.6189 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8032 2.2371 -0.8900 30 1 1.8031 2.2370 0.8900 31 1 5.5493 1.4358 -1.0584 32 1 4.1978 0.3105 -1.3330 33 1 3.0090 2.5146 -4.8626 34 1 4.4638 3.5258 -4.6921 35 1 6.4603 3.0633 -5.9768 36 1 7.4084 2.0788 -8.0177 37 1 9.3980 0.3215 -8.8513 38 1 3.8869 -0.3692 -8.4324 39 1 2.9748 0.6290 -6.3819 40 1 3.8475 1.7253 2.2393 41 1 5.4512 1.4338 1.3762 42 1 5.2006 3.6476 0.1626 43 1 3.5969 3.9392 1.0256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844466708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -56.586658 kcal Electronic energy + Delta-G solvation = -23493.519094 eV Core-core repulsion = 20016.035228 eV Total energy + Delta-G solvation = -3477.483866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.28223 -38.32828 -37.53496 -35.84271 -33.83545 -30.98207 -30.02152 -29.45903 -29.35056 -28.34680 -26.99426 -23.86500 -22.66987 -21.40227 -21.06871 -20.02870 -19.27147 -17.38395 -17.29191 -16.68163 -16.21913 -15.80972 -15.40800 -15.33080 -14.91140 -14.36008 -14.05441 -13.90761 -13.77117 -13.75793 -13.17187 -12.88751 -12.70868 -12.49620 -12.28332 -12.01641 -11.93189 -11.74477 -11.71251 -11.58993 -11.18719 -10.98816 -10.81344 -10.65315 -10.53812 -10.42985 -10.16621 -10.11951 -9.73523 -9.63542 -9.43888 -9.24830 -7.83903 -7.55010 -7.41846 -6.82551 -4.45906 1.44153 2.38149 2.45935 2.53158 2.96094 3.01363 3.04343 3.06933 3.31576 3.75277 3.87610 4.29543 4.46942 4.53696 4.56629 4.73992 4.88606 4.92178 5.12635 5.24011 5.38477 5.43607 5.45564 5.53384 5.60792 5.62491 5.68944 5.71086 5.74382 5.83230 5.90710 6.10424 6.26306 6.32237 6.87351 6.93585 6.99951 7.19066 7.27768 7.53241 7.74678 7.97284 8.01530 8.14664 8.20867 8.55574 8.80383 8.87869 10.11314 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.002353 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.449065 B =11895.486243 C =12381.515061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.260 6.260 3 C -0.047 4.047 4 C -0.101 4.101 5 C -0.082 4.082 6 C 0.459 3.541 7 O -0.518 6.518 8 O -0.350 6.350 9 C 0.137 3.863 10 C -0.233 4.233 11 C -0.077 4.077 12 C -0.167 4.167 13 C 0.118 3.882 14 C -0.458 4.458 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.790 5.790 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.228 4.228 23 C -0.065 4.065 24 C -0.162 4.162 25 C -0.151 4.151 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.282 0.718 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 2.093 16.922 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.034 6.034 3 C -0.195 4.195 4 C -0.102 4.102 5 C -0.120 4.120 6 C 0.303 3.697 7 O -0.408 6.408 8 O -0.266 6.266 9 C 0.065 3.935 10 C -0.234 4.234 11 C -0.096 4.096 12 C -0.186 4.186 13 C 0.115 3.885 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.415 5.415 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.247 4.247 23 C -0.083 4.083 24 C -0.199 4.199 25 C -0.190 4.190 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.087 1.493 16.946 18.429 hybrid contribution -0.534 0.900 -0.766 1.297 sum -7.622 2.393 16.180 18.044 Atomic orbital electron populations 1.23380 0.94534 1.06466 1.04811 1.86885 1.06950 1.11522 1.98022 1.22965 0.96707 0.94119 1.05665 1.20618 0.92004 1.03629 0.93927 1.20922 1.01855 1.01114 0.88121 1.23487 0.77194 0.83338 0.85697 1.90583 1.36114 1.26553 1.87558 1.86724 1.69144 1.55558 1.15198 1.21695 0.98070 0.92848 0.80896 1.18705 0.99046 1.08123 0.97522 1.20544 0.93735 0.98668 0.96645 1.21305 1.01317 0.98784 0.97212 1.17695 0.90475 0.88725 0.91556 1.19671 0.91566 1.34304 1.03125 0.90219 1.25956 0.97318 0.92826 0.98359 1.69811 1.05186 1.35258 1.31208 0.86253 0.78644 0.79439 0.82063 1.19216 1.20217 1.18553 1.20990 0.99631 1.04883 0.99202 1.20393 0.97379 0.95186 0.95380 1.23157 1.01877 1.00648 0.94190 1.23048 1.02877 0.90585 1.02527 0.90697 0.90484 0.88073 0.88593 0.90045 0.87469 0.86821 0.92235 0.92160 0.89351 0.86203 0.90700 0.88698 0.89300 0.88189 0.88133 0.88294 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.76 101.05 1.09 0.09 16 2 S -0.26 -2.83 21.42 -107.50 -2.30 -5.13 16 3 C -0.05 -0.50 5.59 37.16 0.21 -0.29 16 4 C -0.10 -1.06 1.03 -154.51 -0.16 -1.22 16 5 C -0.08 -1.01 5.54 -27.88 -0.15 -1.16 16 6 C 0.46 7.34 7.76 36.00 0.28 7.62 16 7 O -0.52 -8.95 14.36 -18.75 -0.27 -9.22 16 8 O -0.35 -6.57 10.20 -39.25 -0.40 -6.97 16 9 C 0.14 2.64 5.58 36.01 0.20 2.84 16 10 C -0.23 -5.19 5.54 -104.33 -0.58 -5.76 16 11 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 12 C -0.17 -4.30 8.68 -38.87 -0.34 -4.63 16 13 C 0.12 3.12 5.56 -106.82 -0.59 2.52 16 14 C -0.46 -11.92 9.06 -37.74 -0.34 -12.26 16 15 H 0.08 1.99 7.89 -52.49 -0.41 1.57 16 16 C 0.07 1.82 5.19 -17.34 -0.09 1.73 16 17 N -0.79 -20.10 10.92 55.55 0.61 -19.49 16 18 Si 0.91 18.29 29.58 -169.99 -5.03 13.26 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 22 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 23 C -0.06 -1.47 9.67 -39.66 -0.38 -1.85 16 24 C -0.16 -1.34 9.93 -26.70 -0.27 -1.61 16 25 C -0.15 -1.42 9.80 -26.69 -0.26 -1.68 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 28 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.10 1.21 6.76 -51.93 -0.35 0.86 16 30 H 0.08 0.74 8.11 -51.92 -0.42 0.32 16 31 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.11 1.39 7.33 -51.93 -0.38 1.01 16 33 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.16 6.21 -52.49 -0.33 2.84 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -28.45 376.96 -10.38 -38.83 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.51 Total: 6.85 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -2.16 Total: -23.80 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.61 Total: -19.49 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.67 Total: -16.19 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.30 Total: -5.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.45 -10.38 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844466708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.757 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds