Wall clock time and date at job start Tue Mar 31 2020 13:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 119.99935 * 2 1 4 4 H 1.48492 * 109.47032 * 269.99977 * 3 2 1 5 5 H 1.48499 * 109.46880 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.47074 * 149.99970 * 3 2 1 7 7 C 1.38798 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00012 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00235 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00270 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46998 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00459 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99543 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99517 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47138 * 180.02562 * 14 13 11 16 16 C 1.38289 * 119.92033 * 89.99814 * 15 14 13 17 17 C 1.38100 * 120.06996 * 180.02562 * 16 15 14 18 18 C 1.38919 * 119.92763 * 0.02562 * 17 16 15 19 19 N 1.39675 * 120.07351 * 179.97438 * 18 17 16 20 20 C 1.48533 * 110.99896 * 116.90242 * 19 18 17 21 21 C 1.54930 * 103.22949 * 159.71854 * 20 19 18 22 22 C 1.54600 * 102.91907 * 322.58575 * 21 20 19 23 23 C 1.47898 * 110.99628 * 234.29526 * 19 18 17 24 24 C 1.38912 * 119.84884 * 0.25058 * 18 17 16 25 25 C 1.38104 * 119.92261 * 359.51667 * 24 18 17 26 26 H 0.96999 * 120.00380 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47160 * 60.00174 * 10 9 7 28 28 H 1.09005 * 109.47202 * 300.00258 * 10 9 7 29 29 H 0.96996 * 120.00115 * 0.02562 * 13 11 10 30 30 H 1.08997 * 109.47020 * 60.00218 * 14 13 11 31 31 H 1.09005 * 109.47382 * 300.00277 * 14 13 11 32 32 H 1.07998 * 119.96703 * 0.02562 * 16 15 14 33 33 H 1.08006 * 120.03876 * 179.97438 * 17 16 15 34 34 H 1.09005 * 110.66495 * 278.15777 * 20 19 18 35 35 H 1.09002 * 110.66858 * 41.27945 * 20 19 18 36 36 H 1.09000 * 110.72569 * 204.23001 * 21 20 19 37 37 H 1.08995 * 110.72507 * 80.94108 * 21 20 19 38 38 H 1.09002 * 110.30609 * 263.03780 * 22 21 20 39 39 H 1.08995 * 110.30628 * 140.87567 * 22 21 20 40 40 H 1.08998 * 109.92060 * 333.51048 * 23 19 18 41 41 H 1.08999 * 109.91792 * 94.61420 * 23 19 18 42 42 H 1.07997 * 120.03468 * 179.74888 * 24 18 17 43 43 H 1.08004 * 119.96458 * 180.22726 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3441 -2.2962 -0.0025 13 7 6.0457 -4.4947 -0.0016 14 6 7.4908 -4.7357 -0.0021 15 6 7.7526 -6.2198 -0.0020 16 6 7.8719 -6.8993 -1.2006 17 6 8.1112 -8.2594 -1.2041 18 6 8.2316 -8.9450 -0.0019 19 7 8.4732 -10.3207 -0.0019 20 6 9.7832 -10.6311 0.6255 21 6 9.6461 -12.1251 1.0122 22 6 8.1722 -12.2307 1.4666 23 6 7.4605 -11.0366 0.8040 24 6 8.1055 -8.2603 1.2002 25 6 7.8710 -6.8994 1.1965 26 1 -0.4850 0.8400 0.0004 27 1 3.6434 -3.4318 -0.8906 28 1 3.6440 -3.4314 0.8893 29 1 5.4291 -5.2434 -0.0009 30 1 7.9341 -4.2881 0.8874 31 1 7.9333 -4.2891 -0.8926 32 1 7.7777 -6.3658 -2.1348 33 1 8.2039 -8.7896 -2.1404 34 1 10.5946 -10.4914 -0.0888 35 1 9.9402 -10.0171 1.5124 36 1 10.3209 -12.3753 1.8308 37 1 9.8305 -12.7653 0.1495 38 1 8.1047 -12.1566 2.5520 39 1 7.7366 -13.1689 1.1229 40 1 7.0580 -10.3730 1.5693 41 1 6.6560 -11.3911 0.1596 42 1 8.1946 -8.7911 2.1365 43 1 7.7765 -6.3657 2.1307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028335010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:53 Heat of formation + Delta-G solvation = -28.455691 kcal Electronic energy + Delta-G solvation = -22923.900841 eV Core-core repulsion = 19479.929576 eV Total energy + Delta-G solvation = -3443.971264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35905 -40.60475 -38.94392 -35.94506 -34.67153 -33.60748 -31.98720 -31.54310 -29.85320 -29.71595 -27.86451 -26.19480 -23.99542 -23.02738 -21.86100 -21.83109 -21.34211 -19.93515 -18.41082 -17.91585 -17.42298 -17.24795 -17.06820 -16.63390 -16.00777 -15.92357 -15.70400 -15.25341 -15.06350 -14.92522 -14.61231 -14.48695 -14.28071 -14.15574 -13.61033 -13.38524 -13.34929 -13.13984 -13.00480 -12.93766 -12.66764 -12.32646 -12.29185 -12.11558 -12.08799 -11.86441 -11.47763 -11.16997 -11.10476 -10.54065 -10.18875 -9.93219 -9.70656 -9.50431 -8.99634 -8.51399 -6.22347 0.09045 0.40035 0.99925 1.31870 1.47329 1.54950 1.56876 2.21244 2.26135 2.67178 2.82222 2.86743 2.87703 3.61935 3.70080 3.83351 3.87620 3.89633 3.99581 4.04910 4.21340 4.29997 4.31298 4.40342 4.46928 4.55594 4.57250 4.66787 4.73065 4.81647 4.87039 4.93342 5.03111 5.07122 5.13906 5.23635 5.25935 5.33217 5.46890 5.57989 5.70767 5.75475 5.79579 6.11509 6.37129 6.43614 6.93634 7.15669 8.60938 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.033091 B = 0.001950 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.944462 B =14357.618777 C =14809.696265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.112 4.112 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.708 5.708 14 C 0.165 3.835 15 C -0.111 4.111 16 C -0.092 4.092 17 C -0.105 4.105 18 C 0.082 3.918 19 N -0.496 5.496 20 C 0.035 3.965 21 C -0.120 4.120 22 C -0.129 4.129 23 C 0.032 3.968 24 C -0.154 4.154 25 C -0.091 4.091 26 H 0.277 0.723 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.414 0.586 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.066 -26.999 2.245 34.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.263 4.263 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.362 5.362 14 C 0.043 3.957 15 C -0.111 4.111 16 C -0.111 4.111 17 C -0.123 4.123 18 C -0.012 4.012 19 N -0.218 5.218 20 C -0.090 4.090 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.094 4.094 24 C -0.174 4.174 25 C -0.110 4.110 26 H 0.086 0.914 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.251 0.749 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.149 0.851 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 22.168 -25.559 1.705 33.876 hybrid contribution -1.556 -0.271 0.727 1.739 sum 20.612 -25.830 2.432 33.135 Atomic orbital electron populations 1.70016 1.07301 1.29025 1.49121 1.25578 0.95296 1.02298 0.92892 0.85855 0.80673 0.79541 0.80230 1.18680 1.18332 1.16036 1.22467 0.90285 0.96695 1.58278 0.91983 1.84690 1.06384 1.06089 1.97587 1.23273 0.95852 0.99666 1.07464 1.19943 0.89381 0.83198 0.75244 1.90693 1.59261 1.43742 1.50291 1.45837 1.08269 1.06781 1.75313 1.20178 0.80559 0.91987 1.03015 1.19769 1.03213 0.94164 0.94002 1.21214 0.97770 0.94086 0.98033 1.21139 0.99619 0.93654 0.97928 1.19223 0.99116 0.89789 0.93117 1.62466 1.03705 1.04697 1.50931 1.23409 0.90777 0.97040 0.97822 1.22501 0.96506 0.94772 1.01976 1.22423 0.95529 0.98105 1.00665 1.23063 0.95002 0.95685 0.95662 1.21695 1.02274 0.94942 0.98503 1.21107 0.97900 0.94081 0.97945 0.91369 0.86874 0.86854 0.74915 0.90966 0.90830 0.84426 0.84542 0.89818 0.93117 0.89376 0.90496 0.90473 0.90027 0.93169 0.90393 0.85123 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.93 13.97 21.65 0.30 -55.63 16 2 C 0.04 2.63 5.50 84.86 0.47 3.10 16 3 Si 0.92 45.08 27.74 68.60 1.90 46.98 16 4 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 7 C -0.53 -30.92 10.04 67.95 0.68 -30.23 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 9 S -0.17 -8.80 18.55 -56.49 -1.05 -9.85 16 10 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 11 C 0.54 18.29 7.85 87.66 0.69 18.98 16 12 O -0.56 -23.77 15.86 -3.03 -0.05 -23.82 16 13 N -0.71 -16.87 5.55 -466.77 -2.59 -19.46 16 14 C 0.17 3.47 5.79 85.63 0.50 3.97 16 15 C -0.11 -1.90 5.25 -19.84 -0.10 -2.00 16 16 C -0.09 -1.48 9.69 22.25 0.22 -1.26 16 17 C -0.10 -1.68 9.97 22.40 0.22 -1.46 16 18 C 0.08 1.32 4.86 38.22 0.19 1.50 16 19 N -0.50 -7.21 5.28 -682.79 -3.60 -10.81 16 20 C 0.04 0.40 6.43 86.65 0.56 0.96 16 21 C -0.12 -0.95 7.06 31.80 0.22 -0.73 16 22 C -0.13 -1.07 6.93 31.47 0.22 -0.85 16 23 C 0.03 0.39 6.48 86.45 0.56 0.96 16 24 C -0.15 -2.33 7.91 22.40 0.18 -2.16 16 25 C -0.09 -1.45 9.69 22.25 0.22 -1.24 16 26 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 28 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.41 7.79 8.46 -92.71 -0.78 7.00 16 30 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 31 H 0.07 1.63 8.08 -2.38 -0.02 1.61 16 32 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.05 0.58 7.04 -2.39 -0.02 0.56 16 36 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.05 0.63 6.29 -2.39 -0.02 0.62 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 42 H 0.13 1.66 7.04 -2.91 -0.02 1.64 16 43 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -72.07 368.16 0.35 -71.72 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.19 Total: 15.08 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 5.25 Total: -14.22 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -5.89 Total: -85.89 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -72.07 0.35 -71.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028335010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.268 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds