Wall clock time and date at job start Tue Mar 31 2020 13:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99729 * 2 1 4 4 H 1.48496 * 109.47500 * 269.99912 * 3 2 1 5 5 H 1.48495 * 109.47321 * 30.00482 * 3 2 1 6 6 H 1.48507 * 109.46819 * 150.00014 * 3 2 1 7 7 C 1.38798 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99670 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46988 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00124 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99904 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99997 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47003 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.47152 * 179.97438 * 15 14 13 17 17 C 1.46429 * 110.99863 * 48.68313 * 16 15 14 18 18 C 1.53376 * 108.67745 * 178.97730 * 17 16 15 19 19 C 1.53046 * 107.94511 * 291.85216 * 18 17 16 20 20 C 1.50805 * 109.66310 * 47.35664 * 19 18 17 21 21 C 1.38617 * 118.12644 * 164.37066 * 20 19 18 22 22 C 1.38050 * 120.48231 * 179.38502 * 21 20 19 23 23 C 1.38314 * 119.89017 * 0.22116 * 22 21 20 24 24 C 1.37810 * 119.95326 * 359.64232 * 23 22 21 25 25 C 1.38368 * 122.00403 * 344.01253 * 20 19 18 26 26 H 0.97001 * 120.00263 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.47104 * 59.99640 * 10 9 7 28 28 H 1.09004 * 109.46802 * 299.99927 * 10 9 7 29 29 H 0.96996 * 120.00339 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46689 * 59.99655 * 14 13 11 31 31 H 1.09000 * 109.46610 * 299.99856 * 14 13 11 32 32 H 1.09001 * 109.47326 * 60.00479 * 15 14 13 33 33 H 1.08992 * 109.47452 * 300.00254 * 15 14 13 34 34 H 1.08994 * 109.60625 * 298.73947 * 17 16 15 35 35 H 1.09002 * 109.59863 * 59.06124 * 17 16 15 36 36 H 1.09002 * 109.76230 * 51.45956 * 18 17 16 37 37 H 1.08995 * 109.76447 * 172.18610 * 18 17 16 38 38 H 1.09003 * 109.43995 * 287.29444 * 19 18 17 39 39 H 1.09001 * 109.43734 * 167.41373 * 19 18 17 40 40 H 1.07997 * 119.75587 * 359.36184 * 21 20 19 41 41 H 1.08002 * 120.05217 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.02647 * 179.90083 * 23 22 21 43 43 H 1.07996 * 119.79013 * 180.27502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5730 -3.2324 0.0010 12 8 6.3441 -2.2961 0.0015 13 7 6.0457 -4.4946 0.0005 14 6 7.4908 -4.7356 0.0011 15 6 7.7565 -6.2423 0.0010 16 7 9.2054 -6.4841 0.0009 17 6 9.8716 -5.6803 1.0277 18 6 11.3730 -5.9920 0.9981 19 6 11.5655 -7.4309 1.4829 20 6 10.5880 -8.3384 0.7793 21 6 10.8144 -9.7051 0.8271 22 6 9.9436 -10.5812 0.2106 23 6 8.8387 -10.0943 -0.4642 24 6 8.6056 -8.7369 -0.5136 25 6 9.4848 -7.8458 0.1048 26 1 -0.4850 0.8400 0.0004 27 1 3.6440 -3.4313 -0.8903 28 1 3.6433 -3.4317 0.8896 29 1 5.4291 -5.2434 -0.0002 30 1 7.9332 -4.2890 0.8915 31 1 7.9341 -4.2881 -0.8885 32 1 7.3140 -6.6893 -0.8893 33 1 7.3132 -6.6895 0.8906 34 1 9.7138 -4.6215 0.8227 35 1 9.4635 -5.9278 2.0076 36 1 11.7502 -5.8924 -0.0197 37 1 11.9050 -5.3059 1.6571 38 1 11.3942 -7.4773 2.5584 39 1 12.5831 -7.7544 1.2639 40 1 11.6785 -10.0874 1.3500 41 1 10.1269 -11.6447 0.2518 42 1 8.1569 -10.7776 -0.9487 43 1 7.7398 -8.3599 -1.0374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048793948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:18 Heat of formation + Delta-G solvation = -8.362977 kcal Electronic energy + Delta-G solvation = -23353.578069 eV Core-core repulsion = 19910.478090 eV Total energy + Delta-G solvation = -3443.099979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02007 -39.30787 -37.43898 -35.38650 -34.11192 -32.45254 -30.96376 -30.60571 -29.67999 -27.96672 -25.66438 -25.36985 -23.75284 -23.08449 -21.35678 -20.54550 -19.84237 -17.89373 -17.58556 -16.63458 -16.43225 -16.17537 -15.84267 -15.59946 -14.98343 -14.88515 -14.82491 -14.31043 -13.96943 -13.79704 -13.73322 -13.56829 -13.26487 -13.19554 -12.81181 -12.74406 -12.30786 -11.99678 -11.88809 -11.67074 -11.44398 -11.28072 -11.09036 -11.01843 -10.82723 -10.63043 -10.16924 -9.87572 -9.60348 -9.07095 -9.05187 -9.00140 -8.52120 -8.01657 -6.93668 -6.30140 -4.02172 1.06472 1.09340 2.66588 2.92403 3.05700 3.32119 3.40199 3.49485 3.54331 3.73210 4.24694 4.31733 4.32336 4.42929 4.53501 4.62871 4.72726 4.76582 4.78213 4.96741 4.99305 5.07244 5.08894 5.11598 5.18178 5.23580 5.28256 5.44320 5.48980 5.52828 5.59441 5.70745 5.73888 5.76634 5.78605 5.90131 5.98469 6.12655 6.26839 6.40569 6.44918 6.67566 6.95886 7.52396 7.92852 8.40295 8.42767 9.15943 10.79026 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.030856 B = 0.002113 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.234278 B =13248.063166 C =14000.239945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.118 3.882 15 C 0.046 3.954 16 N -0.487 5.487 17 C 0.047 3.953 18 C -0.122 4.122 19 C -0.079 4.079 20 C -0.125 4.125 21 C -0.093 4.093 22 C -0.151 4.151 23 C -0.095 4.095 24 C -0.162 4.162 25 C 0.131 3.869 26 H 0.271 0.729 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.400 0.600 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.312 -21.458 2.160 31.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.392 5.392 14 C -0.007 4.007 15 C -0.080 4.080 16 N -0.201 5.201 17 C -0.079 4.079 18 C -0.160 4.160 19 C -0.116 4.116 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.171 4.171 23 C -0.114 4.114 24 C -0.183 4.183 25 C 0.032 3.968 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.234 0.766 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 23.590 -19.511 1.736 30.663 hybrid contribution -1.401 -1.042 0.491 1.814 sum 22.190 -20.553 2.228 30.328 Atomic orbital electron populations 1.69935 1.05910 1.27784 1.48014 1.24719 0.94465 0.98989 0.93181 0.86730 0.81879 0.83260 0.79952 1.19186 1.19936 1.15931 1.22312 0.88229 0.97546 1.58835 0.89364 1.84801 1.09331 0.99957 1.97433 1.23275 0.93804 1.04486 1.05889 1.20278 0.90657 0.82074 0.75170 1.90708 1.58781 1.42135 1.47554 1.45851 1.07064 1.08293 1.77994 1.21357 0.81941 0.94091 1.03294 1.22447 0.86346 0.96448 1.02753 1.58035 1.09734 1.05274 1.47025 1.22334 0.94598 0.98538 0.92389 1.21719 0.95155 0.96251 1.02885 1.20535 0.97913 0.93773 0.99369 1.19518 0.97398 0.94446 1.01418 1.20949 0.99149 0.92156 0.98943 1.20987 0.95972 0.99521 1.00583 1.20950 0.97272 0.94926 0.98229 1.21170 1.00568 0.93205 1.03326 1.18568 0.94848 0.87532 0.95863 0.91926 0.88391 0.88408 0.76634 0.91147 0.90438 0.88995 0.92720 0.88739 0.93254 0.90414 0.90230 0.90812 0.90503 0.86168 0.86244 0.86006 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 11 C 0.53 9.21 7.85 -10.99 -0.09 9.13 16 12 O -0.52 -10.99 15.86 5.55 0.09 -10.91 16 13 N -0.74 -8.92 5.56 -60.29 -0.33 -9.25 16 14 C 0.12 1.26 5.04 -4.04 -0.02 1.24 16 15 C 0.05 0.39 4.44 -3.83 -0.02 0.37 16 16 N -0.49 -4.50 4.65 -171.30 -0.80 -5.29 16 17 C 0.05 0.39 4.72 -3.89 -0.02 0.37 16 18 C -0.12 -0.86 6.19 -26.51 -0.16 -1.03 16 19 C -0.08 -0.54 5.81 -27.81 -0.16 -0.70 16 20 C -0.12 -1.09 5.74 -104.38 -0.60 -1.69 16 21 C -0.09 -0.73 9.63 -39.51 -0.38 -1.11 16 22 C -0.15 -1.15 10.05 -39.62 -0.40 -1.55 16 23 C -0.10 -0.75 10.04 -39.71 -0.40 -1.15 16 24 C -0.16 -1.43 9.03 -39.22 -0.35 -1.78 16 25 C 0.13 1.24 5.81 -83.86 -0.49 0.76 16 26 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 28 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 29 H 0.40 3.62 8.47 -40.82 -0.35 3.28 16 30 H 0.07 0.80 6.35 -51.93 -0.33 0.47 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 0.70 6.35 -51.93 -0.33 0.37 16 33 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.09 0.80 6.28 -51.93 -0.33 0.47 16 35 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.97 5.98 -52.49 -0.31 0.65 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -34.25 360.48 -10.49 -44.74 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.29 Total: 0.73 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -2.65 Total: -11.21 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.36 Total: -40.23 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.25 -10.49 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048793948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.373 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds