Wall clock time and date at job start Tue Mar 31 2020 13:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99729 * 2 1 4 4 H 1.48496 * 109.47500 * 269.99912 * 3 2 1 5 5 H 1.48495 * 109.47321 * 30.00482 * 3 2 1 6 6 H 1.48507 * 109.46819 * 150.00014 * 3 2 1 7 7 C 1.38798 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00330 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99670 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46988 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00124 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99904 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99997 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47003 * 179.97438 * 14 13 11 16 16 N 1.46902 * 109.47152 * 179.97438 * 15 14 13 17 17 C 1.46429 * 110.99863 * 48.68313 * 16 15 14 18 18 C 1.53376 * 108.67745 * 178.97730 * 17 16 15 19 19 C 1.53046 * 107.94511 * 291.85216 * 18 17 16 20 20 C 1.50805 * 109.66310 * 47.35664 * 19 18 17 21 21 C 1.38617 * 118.12644 * 164.37066 * 20 19 18 22 22 C 1.38050 * 120.48231 * 179.38502 * 21 20 19 23 23 C 1.38314 * 119.89017 * 0.22116 * 22 21 20 24 24 C 1.37810 * 119.95326 * 359.64232 * 23 22 21 25 25 C 1.38368 * 122.00403 * 344.01253 * 20 19 18 26 26 H 0.97001 * 120.00263 * 359.97438 * 1 2 3 27 27 H 1.08991 * 109.47104 * 59.99640 * 10 9 7 28 28 H 1.09004 * 109.46802 * 299.99927 * 10 9 7 29 29 H 0.96996 * 120.00339 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.46689 * 59.99655 * 14 13 11 31 31 H 1.09000 * 109.46610 * 299.99856 * 14 13 11 32 32 H 1.09001 * 109.47326 * 60.00479 * 15 14 13 33 33 H 1.08992 * 109.47452 * 300.00254 * 15 14 13 34 34 H 1.08994 * 109.60625 * 298.73947 * 17 16 15 35 35 H 1.09002 * 109.59863 * 59.06124 * 17 16 15 36 36 H 1.09002 * 109.76230 * 51.45956 * 18 17 16 37 37 H 1.08995 * 109.76447 * 172.18610 * 18 17 16 38 38 H 1.09003 * 109.43995 * 287.29444 * 19 18 17 39 39 H 1.09001 * 109.43734 * 167.41373 * 19 18 17 40 40 H 1.07997 * 119.75587 * 359.36184 * 21 20 19 41 41 H 1.08002 * 120.05217 * 179.97438 * 22 21 20 42 42 H 1.08002 * 120.02647 * 179.90083 * 23 22 21 43 43 H 1.07996 * 119.79013 * 180.27502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5730 -3.2324 0.0010 12 8 6.3441 -2.2961 0.0015 13 7 6.0457 -4.4946 0.0005 14 6 7.4908 -4.7356 0.0011 15 6 7.7565 -6.2423 0.0010 16 7 9.2054 -6.4841 0.0009 17 6 9.8716 -5.6803 1.0277 18 6 11.3730 -5.9920 0.9981 19 6 11.5655 -7.4309 1.4829 20 6 10.5880 -8.3384 0.7793 21 6 10.8144 -9.7051 0.8271 22 6 9.9436 -10.5812 0.2106 23 6 8.8387 -10.0943 -0.4642 24 6 8.6056 -8.7369 -0.5136 25 6 9.4848 -7.8458 0.1048 26 1 -0.4850 0.8400 0.0004 27 1 3.6440 -3.4313 -0.8903 28 1 3.6433 -3.4317 0.8896 29 1 5.4291 -5.2434 -0.0002 30 1 7.9332 -4.2890 0.8915 31 1 7.9341 -4.2881 -0.8885 32 1 7.3140 -6.6893 -0.8893 33 1 7.3132 -6.6895 0.8906 34 1 9.7138 -4.6215 0.8227 35 1 9.4635 -5.9278 2.0076 36 1 11.7502 -5.8924 -0.0197 37 1 11.9050 -5.3059 1.6571 38 1 11.3942 -7.4773 2.5584 39 1 12.5831 -7.7544 1.2639 40 1 11.6785 -10.0874 1.3500 41 1 10.1269 -11.6447 0.2518 42 1 8.1569 -10.7776 -0.9487 43 1 7.7398 -8.3599 -1.0374 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048793948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:18 Heat of formation + Delta-G solvation = -30.834641 kcal Electronic energy + Delta-G solvation = -23354.552514 eV Core-core repulsion = 19910.478090 eV Total energy + Delta-G solvation = -3444.074423 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65685 -40.61405 -38.12240 -36.24138 -34.99765 -34.67066 -31.98440 -31.23291 -30.61683 -28.91944 -27.84201 -26.09653 -24.35827 -23.78823 -22.10767 -21.80923 -20.42114 -19.88361 -18.30697 -17.89396 -17.26862 -17.10415 -16.97972 -16.88058 -16.53847 -15.86295 -15.71898 -15.40179 -15.08012 -14.87328 -14.61391 -14.49341 -14.41985 -14.21574 -13.93142 -13.59709 -13.34659 -13.27266 -13.02007 -12.80397 -12.66070 -12.58511 -12.30400 -12.04585 -11.86977 -11.68188 -11.40743 -11.17226 -11.08506 -10.79919 -10.53894 -10.20160 -9.63003 -8.99885 -8.64435 -8.51559 -6.22429 0.47892 0.48849 0.98009 1.31618 1.46193 1.53013 1.54532 2.06750 2.24987 2.63941 2.76826 2.86648 2.97180 3.58118 3.68377 3.84562 3.85453 3.88781 4.04803 4.11841 4.23524 4.24002 4.32991 4.43281 4.46968 4.48686 4.50982 4.60969 4.69410 4.75595 4.79417 4.88913 4.98942 5.03103 5.18354 5.22503 5.29614 5.34397 5.56208 5.69327 5.70750 5.86093 6.04151 6.11634 6.33737 6.41523 6.93615 7.14497 8.60691 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.030856 B = 0.002113 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.234278 B =13248.063166 C =14000.239945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.561 6.561 13 N -0.711 5.711 14 C 0.122 3.878 15 C 0.056 3.944 16 N -0.496 5.496 17 C 0.045 3.955 18 C -0.120 4.120 19 C -0.077 4.077 20 C -0.139 4.139 21 C -0.101 4.101 22 C -0.157 4.157 23 C -0.104 4.104 24 C -0.175 4.175 25 C 0.111 3.889 26 H 0.277 0.723 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.418 0.582 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.787 -22.907 2.440 33.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.262 4.262 11 C 0.323 3.677 12 O -0.439 6.439 13 N -0.366 5.366 14 C -0.002 4.002 15 C -0.070 4.070 16 N -0.210 5.210 17 C -0.081 4.081 18 C -0.157 4.157 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.120 4.120 22 C -0.176 4.176 23 C -0.122 4.122 24 C -0.196 4.196 25 C 0.012 3.988 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.255 0.745 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 25.059 -21.024 2.017 32.773 hybrid contribution -1.813 -0.810 0.397 2.025 sum 23.246 -21.834 2.414 31.983 Atomic orbital electron populations 1.70013 1.07280 1.29014 1.49135 1.25574 0.95296 1.02291 0.92949 0.85864 0.80678 0.79608 0.80202 1.18727 1.18379 1.16044 1.22458 0.90213 0.96706 1.58205 0.91849 1.84732 1.06468 1.06215 1.97596 1.23263 0.95618 0.99634 1.07670 1.19941 0.89487 0.83130 0.75171 1.90700 1.59337 1.43802 1.50089 1.45570 1.08270 1.07109 1.75605 1.21377 0.80424 0.95789 1.02576 1.22347 0.86563 0.94426 1.03644 1.58071 1.09844 1.05571 1.47497 1.22363 0.95471 0.98088 0.92190 1.21711 0.94388 0.96961 1.02662 1.20564 0.98128 0.93165 0.99550 1.19823 0.97582 0.95278 1.01527 1.21240 0.99830 0.91943 0.98965 1.21308 0.95670 1.00622 0.99985 1.21234 0.97776 0.94960 0.98251 1.21365 1.00917 0.93702 1.03594 1.18761 0.95647 0.87574 0.96826 0.91377 0.86633 0.86621 0.74461 0.91509 0.91616 0.87910 0.91985 0.89327 0.93297 0.91450 0.88745 0.90105 0.89366 0.84373 0.84353 0.84324 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 2 C 0.04 2.59 5.50 84.86 0.47 3.06 16 3 Si 0.91 44.87 27.74 68.60 1.90 46.77 16 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.57 6.74 99.48 0.67 -10.90 16 7 C -0.53 -30.52 10.04 67.95 0.68 -29.84 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -8.83 18.55 -56.49 -1.05 -9.88 16 10 C -0.11 -4.04 6.16 71.23 0.44 -3.61 16 11 C 0.54 17.84 7.85 87.66 0.69 18.53 16 12 O -0.56 -23.53 15.86 -3.05 -0.05 -23.58 16 13 N -0.71 -15.76 5.56 -463.05 -2.57 -18.34 16 14 C 0.12 2.47 5.04 86.38 0.43 2.90 16 15 C 0.06 0.86 4.44 86.30 0.38 1.24 16 16 N -0.50 -8.62 4.65 -695.86 -3.24 -11.86 16 17 C 0.04 0.70 4.72 86.52 0.41 1.11 16 18 C -0.12 -1.56 6.19 30.74 0.19 -1.37 16 19 C -0.08 -0.94 5.81 29.90 0.17 -0.76 16 20 C -0.14 -2.23 5.74 -19.71 -0.11 -2.34 16 21 C -0.10 -1.40 9.63 22.32 0.21 -1.18 16 22 C -0.16 -2.07 10.05 22.24 0.22 -1.84 16 23 C -0.10 -1.45 10.04 22.19 0.22 -1.23 16 24 C -0.18 -2.83 9.03 22.50 0.20 -2.63 16 25 C 0.11 1.97 5.81 38.30 0.22 2.19 16 26 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 28 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 29 H 0.42 6.38 8.47 -92.71 -0.79 5.59 16 30 H 0.07 1.45 6.35 -2.39 -0.02 1.44 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.35 6.35 -2.39 -0.02 1.33 16 33 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 34 H 0.09 1.46 6.28 -2.39 -0.01 1.45 16 35 H 0.05 0.76 8.11 -2.39 -0.02 0.74 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 42 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.13 1.82 5.98 -2.91 -0.02 1.80 16 Total: -1.00 -74.01 360.48 0.33 -73.67 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.20 Total: 14.28 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 4.84 Total: -15.77 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -5.51 Total: -85.50 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -74.01 0.33 -73.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048793948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.837 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds