Wall clock time and date at job start Tue Mar 31 2020 13:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35958 * 116.99757 * 2 1 4 4 C 1.38655 * 120.06541 * 0.02562 * 3 2 1 5 5 C 1.38188 * 119.96847 * 179.70614 * 4 3 2 6 6 C 1.38260 * 120.09056 * 0.54617 * 5 4 3 7 7 C 1.50700 * 119.93193 * 179.72930 * 6 5 4 8 8 C 1.50702 * 109.46869 * 269.72373 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 C 1.50697 * 109.46949 * 90.00203 * 11 10 8 13 13 H 1.08004 * 120.00186 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00081 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46956 * 89.99765 * 16 14 12 18 18 H 1.48497 * 109.47226 * 210.00189 * 16 14 12 19 19 H 1.48501 * 109.47027 * 329.99834 * 16 14 12 20 20 C 1.46506 * 120.00264 * 0.28128 * 10 8 7 21 21 C 1.52998 * 109.47320 * 89.99349 * 20 10 8 22 22 C 1.47196 * 109.47171 * 180.02562 * 21 20 10 23 23 N 9.37565 * 154.18235 * 206.38581 * 3 1 2 24 24 C 1.38250 * 120.12955 * 359.45171 * 6 5 4 25 25 C 1.38329 * 120.02904 * 0.27471 * 24 6 5 26 26 F 1.35103 * 120.04786 * 179.97438 * 25 24 6 27 27 H 1.08999 * 109.47081 * 59.99987 * 1 2 3 28 28 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47115 * 300.00296 * 1 2 3 30 30 H 1.07995 * 120.01603 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.95179 * 180.29305 * 5 4 3 32 32 H 1.09004 * 109.47210 * 149.72666 * 7 6 5 33 33 H 1.08994 * 109.47551 * 29.72318 * 7 6 5 34 34 H 1.09001 * 109.47567 * 210.00057 * 11 10 8 35 35 H 1.09005 * 109.47076 * 330.00563 * 11 10 8 36 36 H 0.96991 * 119.99957 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.46996 * 209.99677 * 20 10 8 38 38 H 1.09001 * 109.46578 * 329.99540 * 20 10 8 39 39 H 1.08997 * 109.47106 * 300.00561 * 21 20 10 40 40 H 1.09004 * 109.46895 * 60.00075 * 21 20 10 41 41 H 1.08004 * 119.98667 * 180.24841 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6053 0.0067 6 6 3.3024 3.6776 0.0009 7 6 3.9850 5.0212 0.0014 8 6 4.2125 5.4696 -1.4192 9 8 3.8550 4.7675 -2.3414 10 7 4.8077 6.6536 -1.6651 11 6 5.0234 7.0922 -3.0461 12 6 3.8283 7.8816 -3.5148 13 1 2.9920 8.0410 -2.8503 14 6 3.8026 8.4004 -4.7920 15 7 4.8209 8.2060 -5.6014 16 14 2.3216 9.3795 -5.3729 17 1 2.5249 10.8169 -5.0602 18 1 2.1601 9.2099 -6.8392 19 1 1.1023 8.8901 -4.6808 20 6 5.2391 7.5019 -0.5512 21 6 6.6776 7.1484 -0.1683 22 6 7.1108 8.0003 0.9511 23 7 7.4453 8.6586 1.8146 24 6 4.0580 2.5199 0.0004 25 6 3.4333 1.2856 -0.0001 26 9 4.1713 0.1540 -0.0011 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2138 2.3201 0.0005 31 1 1.3342 4.5116 0.0119 32 1 4.9431 4.9417 0.5152 33 1 3.3563 5.7480 0.5156 34 1 5.9140 7.7189 -3.0934 35 1 5.1576 6.2210 -3.6873 36 1 4.8029 8.5713 -6.4998 37 1 5.1897 8.5485 -0.8514 38 1 4.5845 7.3381 0.3048 39 1 6.7270 6.1017 0.1318 40 1 7.3321 7.3122 -1.0245 41 1 5.1364 2.5790 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052818117.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:00 Heat of formation + Delta-G solvation = -66.279266 kcal Electronic energy + Delta-G solvation = -26067.072514 eV Core-core repulsion = 22055.247920 eV Total energy + Delta-G solvation = -4011.824594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.73599 -40.23018 -39.32031 -37.60006 -36.82139 -35.23344 -33.01847 -32.04807 -30.86167 -30.76049 -28.61036 -27.46829 -26.15327 -24.03979 -23.02226 -22.83101 -21.44342 -18.68231 -18.31921 -17.64457 -16.99950 -16.86761 -16.50656 -16.45225 -16.18070 -15.54796 -15.08140 -14.89281 -14.75308 -14.63533 -14.36190 -14.28213 -13.93107 -13.62955 -13.17788 -12.89605 -12.53418 -12.45291 -12.37556 -12.34862 -12.17100 -11.88766 -11.60934 -11.58030 -11.30258 -11.18915 -11.11993 -11.00136 -10.86033 -10.63171 -10.21560 -9.73556 -9.12071 -8.91555 -8.49612 -8.12483 -7.87586 -6.11077 -4.15793 1.13130 1.19256 2.71025 2.79429 3.00706 3.25054 3.26558 3.33920 3.37231 3.42996 3.71221 4.18187 4.23103 4.39863 4.57788 4.64700 4.83074 4.93421 4.93962 5.05933 5.09687 5.17820 5.19877 5.23310 5.25031 5.30941 5.41448 5.50587 5.58118 5.79081 5.84938 6.01790 6.05512 6.10245 6.46872 6.57042 6.91060 7.17233 7.33850 7.40170 7.55722 7.84817 8.14841 8.22670 8.81140 8.95765 9.49823 10.97080 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.003740 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.153985 B = 7485.699972 C = 9479.558201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.089 3.911 4 C -0.179 4.179 5 C -0.073 4.073 6 C -0.063 4.063 7 C -0.106 4.106 8 C 0.508 3.492 9 O -0.523 6.523 10 N -0.598 5.598 11 C 0.245 3.755 12 C -0.529 4.529 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.117 3.883 21 C -0.051 4.051 22 C 0.217 3.783 23 N -0.446 5.446 24 C -0.102 4.102 25 C 0.069 3.931 26 F -0.136 7.136 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.502 -10.560 13.827 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.043 3.957 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.064 4.064 7 C -0.146 4.146 8 C 0.294 3.706 9 O -0.398 6.398 10 N -0.330 5.330 11 C 0.126 3.874 12 C -0.568 4.568 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.010 4.010 21 C -0.093 4.093 22 C -0.101 4.101 23 N -0.123 5.123 24 C -0.120 4.120 25 C 0.049 3.951 26 F -0.114 7.114 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.021 -10.154 14.391 18.066 hybrid contribution -1.012 0.363 -0.844 1.367 sum -5.033 -9.791 13.548 17.457 Atomic orbital electron populations 1.23089 0.78139 1.04025 1.01556 1.86113 1.21568 1.26008 1.88966 1.18958 0.90802 0.85508 1.00463 1.21053 1.00116 0.91399 1.07187 1.20876 0.93889 0.97370 0.96979 1.19082 0.93237 0.93623 1.00466 1.20805 1.02260 0.94563 0.96931 1.20197 0.78732 0.81620 0.90095 1.90729 1.49266 1.53818 1.46030 1.48225 1.58233 1.17848 1.08682 1.19346 0.96764 0.96040 0.75229 1.21409 1.03451 1.33346 0.98568 0.92388 1.24916 0.96277 0.96351 0.96418 1.69915 1.30362 1.45310 1.07597 0.86527 0.82993 0.80054 0.78027 1.20643 1.21113 1.19920 1.21317 0.91398 0.97593 0.90654 1.19912 0.99914 0.97307 0.92135 1.29110 0.93216 0.93744 0.94046 1.81218 1.09164 1.10121 1.11785 1.20809 1.00868 0.89705 1.00661 1.16854 0.85868 0.82855 1.09494 1.91482 1.76459 1.49082 1.94400 0.92343 0.88167 0.92542 0.84612 0.85015 0.88301 0.87970 0.94746 0.93560 0.92654 0.88753 0.90540 0.87545 0.86476 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.91 10.36 -19.61 -0.20 -4.11 16 3 C 0.09 1.18 6.69 -39.18 -0.26 0.91 16 4 C -0.18 -2.08 9.04 -39.45 -0.36 -2.44 16 5 C -0.07 -0.89 9.69 -39.59 -0.38 -1.28 16 6 C -0.06 -0.81 4.37 -104.61 -0.46 -1.27 16 7 C -0.11 -1.23 4.38 -29.03 -0.13 -1.35 16 8 C 0.51 8.75 7.67 -10.98 -0.08 8.67 16 9 O -0.52 -11.74 15.61 5.55 0.09 -11.66 16 10 N -0.60 -10.30 2.46 -175.06 -0.43 -10.73 16 11 C 0.24 5.63 5.16 -5.20 -0.03 5.61 16 12 C -0.53 -13.80 9.39 -34.44 -0.32 -14.12 16 13 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 16 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.12 1.42 5.17 -4.04 -0.02 1.40 16 21 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 22 C 0.22 2.46 15.43 -20.76 -0.32 2.14 16 23 N -0.45 -6.29 18.54 42.16 0.78 -5.51 16 24 C -0.10 -1.32 9.67 -39.54 -0.38 -1.71 16 25 C 0.07 0.98 7.31 -39.30 -0.29 0.69 16 26 F -0.14 -2.02 17.11 2.25 0.04 -1.98 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.14 1.21 6.30 -52.49 -0.33 0.88 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.10 0.84 7.16 -51.93 -0.37 0.47 16 33 H 0.10 0.97 7.34 -51.93 -0.38 0.58 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 38 H 0.08 0.73 6.43 -51.93 -0.33 0.40 16 39 H 0.11 0.78 7.24 -51.93 -0.38 0.40 16 40 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -34.47 365.38 -5.87 -40.34 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.05 Total: -2.64 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.32 Total: -0.62 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 1.09 Total: -40.72 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.12 Total: -15.76 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.47 -5.87 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052818117.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.937 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds