Wall clock time and date at job start Tue Mar 31 2020 12:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31516 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47455 * 89.99879 * 8 6 4 10 10 H 1.48499 * 109.47127 * 210.00038 * 8 6 4 11 11 H 1.48506 * 109.46974 * 329.99563 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 H 1.08999 * 110.85769 * 304.06596 * 15 13 12 17 17 C 1.54624 * 110.97183 * 67.89812 * 15 13 12 18 18 C 1.51283 * 104.19720 * 93.31932 * 17 15 13 19 19 O 1.21282 * 124.94513 * 196.21772 * 18 17 15 20 20 N 1.34423 * 110.11355 * 16.25379 * 18 17 15 21 21 C 1.40040 * 124.35163 * 180.42502 * 20 18 17 22 22 C 1.38811 * 120.08220 * 269.70687 * 21 20 18 23 23 C 1.38144 * 119.95233 * 179.70044 * 22 21 20 24 24 C 1.38277 * 120.11398 * 0.56773 * 23 22 21 25 25 C 1.38268 * 120.15504 * 359.72939 * 24 23 22 26 26 C 1.38307 * 120.04560 * 359.97384 * 25 24 23 27 27 F 1.35097 * 120.05246 * 180.02562 * 26 25 24 28 28 C 1.46769 * 111.30287 * 0.40900 * 20 18 17 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 0.96996 * 119.99343 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 34 34 H 1.09001 * 110.48697 * 211.99772 * 17 15 13 35 35 H 1.08996 * 110.48833 * 334.64166 * 17 15 13 36 36 H 1.08001 * 120.02237 * 359.97438 * 22 21 20 37 37 H 1.08007 * 119.94237 * 180.30163 * 23 22 21 38 38 H 1.08005 * 119.92230 * 179.74344 * 24 23 22 39 39 H 1.08000 * 119.97283 * 179.97438 * 25 24 23 40 40 H 1.08993 * 110.24518 * 223.98757 * 28 20 18 41 41 H 1.08999 * 110.24636 * 101.97733 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3442 -0.9485 5.1124 11 1 2.4877 -2.5651 3.7125 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 1 3.6256 -1.1865 -3.3957 17 6 1.6336 -1.7768 -4.0817 18 6 0.8096 -1.0348 -5.1108 19 8 -0.2652 -1.4020 -5.5362 20 7 1.4423 0.0904 -5.4858 21 6 0.9403 1.0056 -6.4193 22 6 1.2426 0.8619 -7.7665 23 6 0.7409 1.7627 -8.6858 24 6 -0.0523 2.8143 -8.2651 25 6 -0.3512 2.9654 -6.9236 26 6 0.1426 2.0638 -5.9983 27 9 -0.1498 2.2110 -4.6875 28 6 2.7267 0.2367 -4.7908 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 0.7089 1.1617 3.4842 33 1 2.2491 -1.6319 -1.1524 34 1 2.1468 -2.6216 -4.5411 35 1 1.0031 -2.1138 -3.2590 36 1 1.8658 0.0438 -8.0961 37 1 0.9721 1.6478 -9.7346 38 1 -0.4395 3.5191 -8.9860 39 1 -0.9706 3.7881 -6.5981 40 1 2.8541 1.2627 -4.4457 41 1 3.5470 -0.0447 -5.4510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:04 Heat of formation + Delta-G solvation = -82.951523 kcal Electronic energy + Delta-G solvation = -27144.654681 eV Core-core repulsion = 23132.107124 eV Total energy + Delta-G solvation = -4012.547557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -48.73410 -41.03036 -39.08198 -38.38450 -36.25344 -34.77746 -33.36859 -32.30619 -30.82110 -29.58491 -28.54498 -27.71449 -25.26746 -23.96906 -22.99647 -22.75365 -20.82598 -19.95301 -19.39047 -17.91541 -17.70584 -17.16162 -16.65703 -16.04075 -15.63758 -15.38962 -15.21876 -15.04854 -14.98043 -14.36525 -14.22179 -14.16067 -13.68423 -13.44619 -13.21097 -12.96456 -12.54633 -12.42311 -12.37410 -12.11185 -11.79547 -11.65227 -11.53192 -11.47201 -11.07982 -10.98260 -10.73011 -10.31917 -10.24064 -10.02060 -9.20093 -9.10610 -9.07240 -8.98899 -8.80357 -8.56254 -7.95374 -6.13312 -4.23058 0.85358 0.98951 2.48018 2.80520 3.21624 3.23727 3.30378 3.31820 3.32174 3.88930 4.13370 4.25334 4.34029 4.46316 4.57442 4.68115 4.78842 4.97916 5.06408 5.10194 5.19326 5.25157 5.34601 5.43591 5.61188 5.74218 5.76580 5.79678 5.89839 6.03388 6.10637 6.34337 6.77858 6.82911 6.94870 6.98139 7.15078 7.42880 7.53364 7.67458 7.89963 8.10620 8.14149 8.61108 8.75281 9.06223 9.44422 10.92622 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.003198 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.793337 B = 8753.750999 C = 9273.166620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.705 5.705 13 C 0.504 3.496 14 O -0.539 6.539 15 C -0.127 4.127 16 H 0.124 0.876 17 C -0.141 4.141 18 C 0.526 3.474 19 O -0.521 6.521 20 N -0.574 5.574 21 C 0.111 3.889 22 C -0.083 4.083 23 C -0.130 4.130 24 C -0.086 4.086 25 C -0.154 4.154 26 C 0.116 3.884 27 F -0.116 7.116 28 C 0.121 3.879 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.389 0.611 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.099 0.901 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -0.906 -21.221 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.353 5.353 13 C 0.287 3.713 14 O -0.417 6.417 15 C -0.149 4.149 16 H 0.142 0.858 17 C -0.181 4.181 18 C 0.315 3.685 19 O -0.396 6.396 20 N -0.305 5.305 21 C 0.020 3.980 22 C -0.102 4.102 23 C -0.149 4.149 24 C -0.104 4.104 25 C -0.173 4.173 26 C 0.095 3.905 27 F -0.094 7.094 28 C -0.001 4.001 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.221 0.779 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.158 0.842 40 H 0.118 0.882 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.076 -0.096 -21.256 21.478 hybrid contribution 0.382 -0.836 1.246 1.549 sum 3.458 -0.932 -20.010 20.328 Atomic orbital electron populations 1.22074 0.98438 0.99130 1.00942 1.18750 0.91016 0.93933 0.79853 0.93343 1.21206 1.32535 1.13266 0.90301 0.92040 1.24896 0.94783 0.94961 0.99088 1.69909 1.35733 1.22431 1.23912 0.86443 0.78581 0.79824 0.82206 1.20572 1.21080 1.19833 1.46486 1.64865 1.13542 1.10357 1.19996 0.79279 0.87581 0.84438 1.90702 1.50567 1.15802 1.84627 1.22405 1.01362 0.96576 0.94557 0.85813 1.22324 0.98247 0.98176 0.99403 1.20995 0.85164 0.80569 0.81746 1.90726 1.20511 1.69983 1.58409 1.45439 1.21602 1.21768 1.41687 1.17420 0.99710 0.91607 0.89270 1.21224 0.98969 0.99161 0.90851 1.21066 0.98881 0.95147 0.99762 1.21074 0.96889 0.97693 0.94776 1.21174 1.02795 1.00218 0.93124 1.18188 0.97346 0.95679 0.79280 1.91647 1.91092 1.94985 1.31715 1.22113 0.83828 1.02512 0.91650 0.95485 0.89155 0.96675 0.92551 0.77867 0.86572 0.86943 0.84881 0.84920 0.84751 0.84227 0.88244 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 2 C 0.27 6.70 2.56 -69.08 -0.18 6.52 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.70 -14.01 5.00 -54.93 -0.27 -14.28 16 13 C 0.50 9.43 7.05 -10.98 -0.08 9.35 16 14 O -0.54 -12.44 15.19 5.55 0.08 -12.36 16 15 C -0.13 -1.59 3.54 -90.14 -0.32 -1.91 16 16 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 17 C -0.14 -1.71 6.40 -26.74 -0.17 -1.88 16 18 C 0.53 8.40 7.99 -10.86 -0.09 8.31 16 19 O -0.52 -10.19 17.71 5.56 0.10 -10.09 16 20 N -0.57 -8.32 2.78 -112.19 -0.31 -8.63 16 21 C 0.11 1.56 5.39 -83.59 -0.45 1.11 16 22 C -0.08 -0.88 9.97 -39.40 -0.39 -1.27 16 23 C -0.13 -1.10 10.04 -39.60 -0.40 -1.50 16 24 C -0.09 -0.75 10.04 -39.56 -0.40 -1.15 16 25 C -0.15 -1.76 10.02 -39.54 -0.40 -2.16 16 26 C 0.12 1.76 7.31 -39.25 -0.29 1.47 16 27 F -0.12 -2.22 17.08 2.25 0.04 -2.18 16 28 C 0.12 1.48 6.61 -3.12 -0.02 1.46 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.39 6.51 8.54 -40.82 -0.35 6.16 16 34 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 1.48 7.85 -51.93 -0.41 1.08 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 38 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.10 1.44 7.02 -51.93 -0.36 1.07 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -35.22 356.19 -7.79 -43.01 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.18 Total: 5.61 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.22 Total: 2.37 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.04 Total: -47.20 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.18 Total: -22.45 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.22 -7.79 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.942 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds