Wall clock time and date at job start Tue Mar 31 2020 12:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31516 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47455 * 89.99879 * 8 6 4 10 10 H 1.48499 * 109.47127 * 210.00038 * 8 6 4 11 11 H 1.48506 * 109.46974 * 329.99563 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 H 1.08999 * 110.85769 * 304.06596 * 15 13 12 17 17 C 1.54624 * 110.97183 * 67.89812 * 15 13 12 18 18 C 1.51283 * 104.19720 * 93.31932 * 17 15 13 19 19 O 1.21282 * 124.94513 * 196.21772 * 18 17 15 20 20 N 1.34423 * 110.11355 * 16.25379 * 18 17 15 21 21 C 1.40040 * 124.35163 * 180.42502 * 20 18 17 22 22 C 1.38811 * 120.08220 * 269.70687 * 21 20 18 23 23 C 1.38144 * 119.95233 * 179.70044 * 22 21 20 24 24 C 1.38277 * 120.11398 * 0.56773 * 23 22 21 25 25 C 1.38268 * 120.15504 * 359.72939 * 24 23 22 26 26 C 1.38307 * 120.04560 * 359.97384 * 25 24 23 27 27 F 1.35097 * 120.05246 * 180.02562 * 26 25 24 28 28 C 1.46769 * 111.30287 * 0.40900 * 20 18 17 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 0.96996 * 119.99343 * 179.97438 * 7 6 4 33 33 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 34 34 H 1.09001 * 110.48697 * 211.99772 * 17 15 13 35 35 H 1.08996 * 110.48833 * 334.64166 * 17 15 13 36 36 H 1.08001 * 120.02237 * 359.97438 * 22 21 20 37 37 H 1.08007 * 119.94237 * 180.30163 * 23 22 21 38 38 H 1.08005 * 119.92230 * 179.74344 * 24 23 22 39 39 H 1.08000 * 119.97283 * 179.97438 * 25 24 23 40 40 H 1.08993 * 110.24518 * 223.98757 * 28 20 18 41 41 H 1.08999 * 110.24636 * 101.97733 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3442 -0.9485 5.1124 11 1 2.4877 -2.5651 3.7125 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 1 3.6256 -1.1865 -3.3957 17 6 1.6336 -1.7768 -4.0817 18 6 0.8096 -1.0348 -5.1108 19 8 -0.2652 -1.4020 -5.5362 20 7 1.4423 0.0904 -5.4858 21 6 0.9403 1.0056 -6.4193 22 6 1.2426 0.8619 -7.7665 23 6 0.7409 1.7627 -8.6858 24 6 -0.0523 2.8143 -8.2651 25 6 -0.3512 2.9654 -6.9236 26 6 0.1426 2.0638 -5.9983 27 9 -0.1498 2.2110 -4.6875 28 6 2.7267 0.2367 -4.7908 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 0.7089 1.1617 3.4842 33 1 2.2491 -1.6319 -1.1524 34 1 2.1468 -2.6216 -4.5411 35 1 1.0031 -2.1138 -3.2590 36 1 1.8658 0.0438 -8.0961 37 1 0.9721 1.6478 -9.7346 38 1 -0.4395 3.5191 -8.9860 39 1 -0.9706 3.7881 -6.5981 40 1 2.8541 1.2627 -4.4457 41 1 3.5470 -0.0447 -5.4510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:03 Heat of formation + Delta-G solvation = -107.451763 kcal Electronic energy + Delta-G solvation = -27145.717091 eV Core-core repulsion = 23132.107124 eV Total energy + Delta-G solvation = -4013.609967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.97931 -42.16359 -40.37406 -39.51587 -37.53374 -36.62106 -34.60176 -34.01889 -31.67291 -31.08605 -29.90432 -28.77752 -27.36970 -25.18459 -24.00256 -23.70157 -22.53479 -21.02017 -20.99151 -19.20728 -18.95299 -18.16476 -18.01355 -17.47025 -17.18879 -16.79696 -16.46501 -16.27346 -16.15769 -15.81816 -15.63791 -15.18648 -14.91493 -14.71782 -14.45670 -14.42139 -14.07911 -13.79000 -13.44385 -13.31428 -13.02122 -12.97787 -12.89091 -12.79806 -12.72382 -12.55533 -12.33815 -12.29359 -12.12581 -11.20500 -11.13197 -10.71669 -10.56951 -10.08384 -10.04918 -9.76474 -9.73007 -8.18001 -6.36042 -0.01223 0.13581 1.31655 1.45256 1.46067 1.56863 1.76470 1.83345 2.33022 2.49148 2.57201 3.12743 3.17985 3.23811 3.39905 3.73530 3.75052 3.93396 4.01387 4.26709 4.28686 4.35597 4.41189 4.55386 4.64585 4.69348 4.76359 4.83668 4.85866 4.97448 5.06534 5.09516 5.22040 5.33127 5.40522 5.46218 5.60520 5.65065 5.82362 5.88385 5.93244 6.07344 6.72929 6.94742 6.97509 7.32335 7.56993 8.88636 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.003198 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.793337 B = 8753.750999 C = 9273.166620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H -0.003 1.003 4 C -0.543 4.543 5 H 0.080 0.920 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.975 3.025 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.256 1.256 12 N -0.701 5.701 13 C 0.494 3.506 14 O -0.591 6.591 15 C -0.109 4.109 16 H 0.180 0.820 17 C -0.129 4.129 18 C 0.509 3.491 19 O -0.572 6.572 20 N -0.574 5.574 21 C 0.081 3.919 22 C -0.084 4.084 23 C -0.113 4.113 24 C -0.077 4.077 25 C -0.160 4.160 26 C 0.059 3.941 27 F -0.157 7.157 28 C 0.118 3.882 29 H 0.039 0.961 30 H 0.065 0.935 31 H -0.001 1.001 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.170 0.830 35 H 0.100 0.900 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.146 0.854 40 H 0.069 0.931 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -3.204 -23.757 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.015 0.985 4 C -0.582 4.582 5 H 0.098 0.902 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.799 3.201 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.180 1.180 12 N -0.350 5.350 13 C 0.281 3.719 14 O -0.472 6.472 15 C -0.130 4.130 16 H 0.197 0.803 17 C -0.169 4.169 18 C 0.300 3.700 19 O -0.451 6.451 20 N -0.303 5.303 21 C -0.010 4.010 22 C -0.102 4.102 23 C -0.131 4.131 24 C -0.094 4.094 25 C -0.179 4.179 26 C 0.038 3.962 27 F -0.136 7.136 28 C -0.003 4.003 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.018 0.982 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.188 0.812 35 H 0.119 0.881 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.192 0.808 39 H 0.164 0.836 40 H 0.087 0.913 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.524 -2.414 -23.822 24.572 hybrid contribution -0.394 0.014 1.895 1.935 sum 5.130 -2.400 -21.927 22.646 Atomic orbital electron populations 1.21902 0.99170 0.99170 0.98924 1.18262 0.90388 0.91989 0.82319 0.98519 1.21564 1.32457 1.13617 0.90517 0.90217 1.25871 0.94859 0.95585 1.02591 1.70078 1.37150 1.24173 1.24573 0.85300 0.77687 0.79314 0.77768 1.20192 1.21361 1.18016 1.46188 1.65034 1.14329 1.09469 1.21170 0.77834 0.87201 0.85718 1.90696 1.52348 1.18561 1.85580 1.22449 1.03525 0.96184 0.90882 0.80287 1.22416 0.97513 0.98944 0.98054 1.21749 0.84924 0.81228 0.82104 1.90682 1.22592 1.71478 1.60370 1.45627 1.22049 1.21191 1.41475 1.17873 1.00634 0.91638 0.90856 1.21550 0.99085 1.00244 0.89371 1.21627 0.96629 0.93448 1.01401 1.21571 0.95775 0.98234 0.93837 1.21446 1.02662 0.99727 0.94072 1.18845 1.00490 0.98479 0.78358 1.91533 1.91906 1.95493 1.34625 1.22349 0.84526 1.00969 0.92416 0.94167 0.91614 0.98192 0.92654 0.75611 0.81212 0.88115 0.82535 0.80600 0.80775 0.83572 0.91273 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.12 9.26 71.98 0.67 -6.46 16 2 C 0.27 14.36 2.56 44.25 0.11 14.47 16 3 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 4 C -0.54 -28.50 8.73 25.60 0.22 -28.28 16 5 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 9 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 12 N -0.70 -28.00 5.00 -446.08 -2.23 -30.23 16 13 C 0.49 18.78 7.05 87.66 0.62 19.40 16 14 O -0.59 -29.10 15.19 -3.04 -0.05 -29.15 16 15 C -0.11 -2.47 3.54 -10.48 -0.04 -2.50 16 16 H 0.18 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.13 -2.82 6.40 30.59 0.20 -2.62 16 18 C 0.51 16.15 7.99 87.90 0.70 16.85 16 19 O -0.57 -22.99 17.71 -3.04 -0.05 -23.04 16 20 N -0.57 -16.51 2.78 -627.46 -1.75 -18.25 16 21 C 0.08 2.30 5.39 38.16 0.21 2.50 16 22 C -0.08 -1.59 9.97 22.38 0.22 -1.36 16 23 C -0.11 -1.50 10.04 22.26 0.22 -1.28 16 24 C -0.08 -1.13 10.04 22.29 0.22 -0.91 16 25 C -0.16 -3.73 10.02 22.29 0.22 -3.51 16 26 C 0.06 1.91 7.31 22.48 0.16 2.08 16 27 F -0.16 -6.72 17.08 44.97 0.77 -5.95 16 28 C 0.12 2.71 6.61 86.83 0.57 3.29 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 31 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.41 13.00 8.54 -92.71 -0.79 12.21 16 34 H 0.17 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 2.51 7.85 -2.39 -0.02 2.49 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.07 2.06 7.02 -2.39 -0.02 2.04 16 41 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -87.15 356.19 4.01 -83.14 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.28 Total: 20.54 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 4.77 Total: 12.68 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.73 Total: -102.12 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.10 Total: -52.19 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.77 Total: -5.95 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -87.15 4.01 -83.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.312 kcal (2) G-P(sol) polarization free energy of solvation -87.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds