Wall clock time and date at job start Tue Mar 31 2020 12:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47293 * 2 1 4 4 C 1.50703 * 109.47489 * 120.00069 * 2 1 3 5 5 H 1.08000 * 120.00539 * 119.99520 * 4 2 1 6 6 C 1.37884 * 119.99603 * 300.00199 * 4 2 1 7 7 N 1.31513 * 119.99999 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99557 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47407 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46866 * 120.00309 * 8 6 4 11 11 H 1.48502 * 109.46991 * 239.99403 * 8 6 4 12 12 N 1.46503 * 109.47164 * 239.99704 * 2 1 3 13 13 C 1.34781 * 119.99456 * 85.00060 * 12 2 1 14 14 O 1.21569 * 120.00366 * 0.02562 * 13 12 2 15 15 C 1.47648 * 119.99703 * 179.97438 * 13 12 2 16 16 C 1.39478 * 120.21469 * 0.27588 * 15 13 12 17 17 C 1.37970 * 119.97673 * 180.29331 * 16 15 13 18 18 C 1.38514 * 120.42234 * 359.70760 * 17 16 15 19 19 C 1.38037 * 120.43330 * 359.97438 * 18 17 16 20 20 C 1.39281 * 120.00930 * 0.02597 * 19 18 17 21 21 C 1.48007 * 120.20658 * 179.97438 * 20 19 18 22 22 C 1.39268 * 120.21451 * 64.99678 * 21 20 19 23 23 C 1.38028 * 120.01918 * 180.02562 * 22 21 20 24 24 C 1.38525 * 120.44417 * 359.95697 * 23 22 21 25 25 C 1.37958 * 120.42179 * 0.02562 * 24 23 22 26 26 C 1.39523 * 119.97621 * 0.02676 * 25 24 23 27 27 C 1.43192 * 120.21969 * 179.97438 * 26 25 24 28 28 N 4.73838 * 139.25294 * 301.52625 * 2 1 3 29 29 H 1.08994 * 109.47214 * 299.99861 * 1 2 3 30 30 H 1.08997 * 109.47190 * 60.00234 * 1 2 3 31 31 H 1.09004 * 109.47293 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99883 * 180.02562 * 7 6 4 33 33 H 0.96995 * 120.00320 * 265.00031 * 12 2 1 34 34 H 1.08003 * 120.01150 * 0.02562 * 16 15 13 35 35 H 1.08002 * 119.78920 * 179.71542 * 17 16 15 36 36 H 1.07997 * 119.78739 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.99188 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.99084 * 359.97438 * 22 21 20 39 39 H 1.07997 * 119.78216 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.78604 * 179.74937 * 24 23 22 41 41 H 1.08005 * 120.01115 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1466 -2.2869 3.6038 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8583 1.1614 -2.4116 15 6 2.6397 -0.7141 -3.5625 16 6 2.9678 -2.0686 -3.5062 17 6 3.4335 -2.7126 -4.6341 18 6 3.5727 -2.0239 -5.8278 19 6 3.2469 -0.6847 -5.9046 20 6 2.7751 -0.0169 -4.7771 21 6 2.4250 1.4191 -4.8543 22 6 1.3657 1.8402 -5.6544 23 6 1.0430 3.1804 -5.7239 24 6 1.7661 4.1149 -5.0008 25 6 2.8187 3.7179 -4.2022 26 6 3.1608 2.3678 -4.1198 27 6 4.2527 1.9501 -3.2930 28 7 5.1197 1.6172 -2.6363 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7095 1.1618 3.4844 33 1 2.2490 -1.6318 -1.1526 34 1 2.8614 -2.6121 -2.5790 35 1 3.6910 -3.7603 -4.5859 36 1 3.9378 -2.5382 -6.7045 37 1 3.3578 -0.1549 -6.8391 38 1 0.7971 1.1179 -6.2214 39 1 0.2211 3.5027 -6.3459 40 1 1.5070 5.1613 -5.0662 41 1 3.3783 4.4522 -3.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:24 Heat of formation + Delta-G solvation = 50.053027 kcal Electronic energy + Delta-G solvation = -26222.886698 eV Core-core repulsion = 22646.875876 eV Total energy + Delta-G solvation = -3576.010822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38227 -38.66970 -37.85219 -35.95371 -34.84086 -32.87976 -32.37107 -31.28759 -31.04888 -29.24002 -28.53001 -25.26214 -24.28682 -23.38536 -23.29236 -21.50687 -20.74150 -19.49325 -18.67733 -17.85126 -16.61851 -15.98918 -15.64146 -15.33522 -15.11381 -14.85729 -14.54932 -14.30880 -14.18912 -13.94813 -13.51806 -13.40769 -12.92441 -12.85602 -12.53755 -12.43789 -12.33577 -12.03098 -11.90889 -11.67803 -11.54595 -11.23741 -11.09029 -10.96494 -10.91094 -10.73961 -10.30471 -10.24031 -9.46107 -9.06455 -9.01881 -8.94904 -8.74567 -8.55401 -8.19905 -7.89432 -6.12115 -4.20946 0.74420 1.07247 1.22109 1.53352 3.05923 3.20941 3.24180 3.30516 3.31984 3.34947 3.98693 4.01383 4.10715 4.32630 4.37899 4.50164 4.81621 4.86307 4.99128 5.03798 5.08041 5.20594 5.32923 5.40017 5.48088 5.52207 5.69884 5.83078 5.85484 5.98627 6.24610 6.29193 6.35512 6.36866 6.48042 6.52042 6.78746 6.83364 6.92242 6.96196 7.14377 7.43490 7.55264 7.69077 7.88990 7.91627 8.14459 8.63251 8.77247 9.07307 9.46221 10.93977 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.004414 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.180778 B = 6342.183084 C = 7385.947441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.699 5.699 13 C 0.536 3.464 14 O -0.535 6.535 15 C -0.107 4.107 16 C -0.089 4.089 17 C -0.121 4.121 18 C -0.105 4.105 19 C -0.111 4.111 20 C -0.015 4.015 21 C 0.015 3.985 22 C -0.107 4.107 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.075 4.075 26 C 0.035 3.965 27 C 0.258 3.742 28 N -0.416 5.416 29 H 0.090 0.910 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -0.839 -20.314 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.346 5.346 13 C 0.321 3.679 14 O -0.414 6.414 15 C -0.110 4.110 16 C -0.107 4.107 17 C -0.139 4.139 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.017 4.017 21 C 0.012 3.988 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.137 4.137 25 C -0.096 4.096 26 C 0.032 3.968 27 C -0.057 4.057 28 N -0.092 5.092 29 H 0.109 0.891 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.187 -0.386 -19.110 19.239 hybrid contribution -0.051 -0.948 0.908 1.314 sum 2.136 -1.334 -18.202 18.375 Atomic orbital electron populations 1.22060 0.98269 0.99089 1.00949 1.18755 0.91032 0.93944 0.79726 0.93343 1.21240 1.32341 1.13212 0.90333 0.92138 1.24873 0.94780 0.94950 0.99024 1.69910 1.35950 1.22428 1.23749 0.86400 0.78604 0.79572 0.82583 1.19740 1.20853 1.20823 1.46519 1.64201 1.13474 1.10434 1.18148 0.79337 0.87082 0.83345 1.90782 1.51000 1.14952 1.84704 1.20460 1.01865 0.94329 0.94345 1.21383 0.96870 0.93426 0.99059 1.21165 0.99741 1.00251 0.92706 1.21197 0.98931 0.94201 0.97962 1.21167 0.99537 0.94615 0.97535 1.18770 0.98000 0.92261 0.92621 1.18431 0.94750 0.90440 0.95178 1.20976 0.96318 0.96165 0.99068 1.21132 0.99039 0.92798 0.98857 1.21009 0.95563 0.99853 0.97234 1.21012 0.97192 0.93625 0.97724 1.15803 0.92400 0.93340 0.95281 1.25668 0.92804 0.93801 0.93441 1.81244 1.12111 1.07315 1.08526 0.89108 0.96559 0.95530 0.92644 0.78038 0.85140 0.85432 0.85486 0.85137 0.85456 0.85592 0.85405 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.26 37.15 0.34 -3.32 16 2 C 0.27 6.97 2.56 -69.08 -0.18 6.79 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.53 8.73 -34.44 -0.30 -14.83 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.70 -15.32 5.02 -55.94 -0.28 -15.60 16 13 C 0.54 11.19 6.92 -12.42 -0.09 11.11 16 14 O -0.53 -12.32 11.49 5.31 0.06 -12.26 16 15 C -0.11 -1.80 5.47 -104.67 -0.57 -2.37 16 16 C -0.09 -1.24 9.53 -39.22 -0.37 -1.61 16 17 C -0.12 -1.34 10.02 -39.58 -0.40 -1.73 16 18 C -0.10 -1.06 10.02 -39.55 -0.40 -1.46 16 19 C -0.11 -1.26 9.73 -39.27 -0.38 -1.64 16 20 C -0.02 -0.23 4.71 -104.58 -0.49 -0.72 16 21 C 0.01 0.22 3.96 -104.56 -0.41 -0.20 16 22 C -0.11 -1.29 9.73 -39.28 -0.38 -1.67 16 23 C -0.10 -1.05 10.02 -39.55 -0.40 -1.45 16 24 C -0.12 -1.31 10.02 -39.58 -0.40 -1.71 16 25 C -0.07 -1.01 9.75 -39.21 -0.38 -1.40 16 26 C 0.04 0.57 3.94 -106.55 -0.42 0.15 16 27 C 0.26 4.88 12.10 -22.43 -0.27 4.61 16 28 N -0.42 -8.70 18.55 41.89 0.78 -7.92 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 33 H 0.39 7.47 6.57 -40.82 -0.27 7.20 16 34 H 0.13 1.69 6.40 -52.48 -0.34 1.36 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -33.32 354.38 -8.75 -42.06 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.66 Total: 6.58 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -5.59 Total: -9.70 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 1.12 Total: -48.17 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.06 Total: -12.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.32 -8.75 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.116 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds