Wall clock time and date at job start Tue Mar 31 2020 12:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47293 * 2 1 4 4 C 1.50703 * 109.47489 * 120.00069 * 2 1 3 5 5 H 1.08000 * 120.00539 * 119.99520 * 4 2 1 6 6 C 1.37884 * 119.99603 * 300.00199 * 4 2 1 7 7 N 1.31513 * 119.99999 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99557 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47407 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46866 * 120.00309 * 8 6 4 11 11 H 1.48502 * 109.46991 * 239.99403 * 8 6 4 12 12 N 1.46503 * 109.47164 * 239.99704 * 2 1 3 13 13 C 1.34781 * 119.99456 * 85.00060 * 12 2 1 14 14 O 1.21569 * 120.00366 * 0.02562 * 13 12 2 15 15 C 1.47648 * 119.99703 * 179.97438 * 13 12 2 16 16 C 1.39478 * 120.21469 * 0.27588 * 15 13 12 17 17 C 1.37970 * 119.97673 * 180.29331 * 16 15 13 18 18 C 1.38514 * 120.42234 * 359.70760 * 17 16 15 19 19 C 1.38037 * 120.43330 * 359.97438 * 18 17 16 20 20 C 1.39281 * 120.00930 * 0.02597 * 19 18 17 21 21 C 1.48007 * 120.20658 * 179.97438 * 20 19 18 22 22 C 1.39268 * 120.21451 * 64.99678 * 21 20 19 23 23 C 1.38028 * 120.01918 * 180.02562 * 22 21 20 24 24 C 1.38525 * 120.44417 * 359.95697 * 23 22 21 25 25 C 1.37958 * 120.42179 * 0.02562 * 24 23 22 26 26 C 1.39523 * 119.97621 * 0.02676 * 25 24 23 27 27 C 1.43192 * 120.21969 * 179.97438 * 26 25 24 28 28 N 4.73838 * 139.25294 * 301.52625 * 2 1 3 29 29 H 1.08994 * 109.47214 * 299.99861 * 1 2 3 30 30 H 1.08997 * 109.47190 * 60.00234 * 1 2 3 31 31 H 1.09004 * 109.47293 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99883 * 180.02562 * 7 6 4 33 33 H 0.96995 * 120.00320 * 265.00031 * 12 2 1 34 34 H 1.08003 * 120.01150 * 0.02562 * 16 15 13 35 35 H 1.08002 * 119.78920 * 179.71542 * 17 16 15 36 36 H 1.07997 * 119.78739 * 180.02562 * 18 17 16 37 37 H 1.07999 * 119.99188 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.99084 * 359.97438 * 22 21 20 39 39 H 1.07997 * 119.78216 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.78604 * 179.74937 * 24 23 22 41 41 H 1.08005 * 120.01115 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1466 -2.2869 3.6038 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8583 1.1614 -2.4116 15 6 2.6397 -0.7141 -3.5625 16 6 2.9678 -2.0686 -3.5062 17 6 3.4335 -2.7126 -4.6341 18 6 3.5727 -2.0239 -5.8278 19 6 3.2469 -0.6847 -5.9046 20 6 2.7751 -0.0169 -4.7771 21 6 2.4250 1.4191 -4.8543 22 6 1.3657 1.8402 -5.6544 23 6 1.0430 3.1804 -5.7239 24 6 1.7661 4.1149 -5.0008 25 6 2.8187 3.7179 -4.2022 26 6 3.1608 2.3678 -4.1198 27 6 4.2527 1.9501 -3.2930 28 7 5.1197 1.6172 -2.6363 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7095 1.1618 3.4844 33 1 2.2490 -1.6318 -1.1526 34 1 2.8614 -2.6121 -2.5790 35 1 3.6910 -3.7603 -4.5859 36 1 3.9378 -2.5382 -6.7045 37 1 3.3578 -0.1549 -6.8391 38 1 0.7971 1.1179 -6.2214 39 1 0.2211 3.5027 -6.3459 40 1 1.5070 5.1613 -5.0662 41 1 3.3783 4.4522 -3.6416 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:23 Heat of formation + Delta-G solvation = 30.425467 kcal Electronic energy + Delta-G solvation = -26223.737813 eV Core-core repulsion = 22646.875876 eV Total energy + Delta-G solvation = -3576.861937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.57227 -39.91469 -39.05239 -37.37894 -36.72814 -34.52178 -33.60287 -32.54077 -32.14310 -30.52173 -30.00056 -27.40130 -25.46494 -24.54450 -24.26837 -22.97434 -21.97171 -21.18945 -19.85070 -19.25849 -18.00660 -17.43669 -17.21211 -16.58599 -16.40820 -16.02636 -15.79300 -15.72185 -15.49755 -15.28381 -14.86827 -14.58408 -14.34814 -14.24690 -14.07143 -13.83709 -13.81632 -13.46158 -13.12801 -13.00611 -12.89411 -12.88648 -12.75503 -12.48973 -12.32788 -12.18689 -12.15984 -11.87859 -11.15787 -10.88890 -10.65483 -10.05930 -10.05475 -9.81456 -9.63109 -9.28471 -8.23512 -6.40985 -0.32693 0.03408 0.25775 0.57757 1.37919 1.39162 1.51233 1.63657 1.99419 2.05374 2.29643 2.55586 2.81204 2.90736 3.06756 3.15499 3.54497 3.81568 3.87514 4.02035 4.15475 4.23937 4.42487 4.45098 4.52758 4.58912 4.67767 4.74394 4.85358 4.88126 4.94988 5.03863 5.08640 5.28764 5.34235 5.38954 5.44137 5.45618 5.51368 5.54931 5.56877 5.63698 5.85518 5.91946 6.02501 6.04678 6.49293 6.65532 6.89706 7.25698 7.46917 8.83039 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.004414 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.180778 B = 6342.183084 C = 7385.947441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.278 3.722 3 H -0.007 1.007 4 C -0.550 4.550 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.705 5.705 13 C 0.531 3.469 14 O -0.564 6.564 15 C -0.143 4.143 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.029 4.029 21 C 0.001 3.999 22 C -0.111 4.111 23 C -0.087 4.087 24 C -0.117 4.117 25 C -0.088 4.088 26 C -0.007 4.007 27 C 0.275 3.725 28 N -0.476 5.476 29 H 0.067 0.933 30 H 0.014 0.986 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.397 0.603 34 H 0.130 0.870 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.152 0.848 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 -2.436 -23.177 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.175 3.825 3 H 0.011 0.989 4 C -0.588 4.588 5 H 0.084 0.916 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.354 5.354 13 C 0.319 3.681 14 O -0.445 6.445 15 C -0.146 4.146 16 C -0.119 4.119 17 C -0.135 4.135 18 C -0.105 4.105 19 C -0.126 4.126 20 C -0.030 4.030 21 C -0.001 4.001 22 C -0.129 4.129 23 C -0.105 4.105 24 C -0.134 4.134 25 C -0.108 4.108 26 C -0.011 4.011 27 C -0.039 4.039 28 N -0.153 5.153 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.148 0.852 35 H 0.179 0.821 36 H 0.188 0.812 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.184 0.816 40 H 0.179 0.821 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.750 -2.006 -22.005 22.166 hybrid contribution 0.047 -0.391 1.623 1.670 sum 1.797 -2.397 -20.383 20.602 Atomic orbital electron populations 1.21839 0.97794 0.99368 0.99662 1.18283 0.91289 0.91470 0.81502 0.98871 1.21540 1.32664 1.13516 0.91084 0.91568 1.25780 0.94796 0.95595 1.02207 1.70049 1.36859 1.23748 1.24601 0.85310 0.78259 0.78460 0.78403 1.18701 1.20988 1.19723 1.46286 1.65186 1.13966 1.09940 1.18854 0.78254 0.86921 0.84087 1.90748 1.52069 1.16326 1.85387 1.20195 1.05518 0.95654 0.93248 1.21535 0.97366 0.92499 1.00514 1.21566 0.98263 1.01781 0.91867 1.21751 0.96202 0.93613 0.98890 1.21562 0.98204 0.95359 0.97444 1.19020 0.98559 0.92483 0.92933 1.18677 0.95449 0.90421 0.95599 1.21352 0.95393 0.97559 0.98610 1.21652 0.99024 0.92000 0.97825 1.21427 0.94213 1.01818 0.95987 1.21266 0.98283 0.92813 0.98471 1.16124 0.93073 0.94961 0.96906 1.26354 0.92548 0.92374 0.92596 1.81202 1.14259 1.09168 1.10642 0.91383 0.96674 0.94248 0.92441 0.76729 0.85196 0.82132 0.81152 0.82132 0.83036 0.81629 0.82118 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.28 15.32 2.56 44.24 0.11 15.44 16 3 H -0.01 -0.43 7.58 -2.38 -0.02 -0.45 16 4 C -0.55 -30.97 8.73 25.60 0.22 -30.74 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.91 -54.13 11.32 21.45 0.24 -53.89 16 8 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.70 -32.54 5.02 -449.16 -2.25 -34.80 16 13 C 0.53 23.35 6.92 86.73 0.60 23.95 16 14 O -0.56 -27.61 11.49 -3.93 -0.05 -27.65 16 15 C -0.14 -4.89 5.47 -19.89 -0.11 -5.00 16 16 C -0.10 -2.75 9.53 22.51 0.21 -2.53 16 17 C -0.12 -2.23 10.02 22.27 0.22 -2.00 16 18 C -0.09 -1.38 10.02 22.29 0.22 -1.16 16 19 C -0.11 -2.13 9.73 22.47 0.22 -1.91 16 20 C -0.03 -0.83 4.71 -19.83 -0.09 -0.93 16 21 C 0.00 0.04 3.96 -19.83 -0.08 -0.04 16 22 C -0.11 -2.44 9.73 22.47 0.22 -2.22 16 23 C -0.09 -1.56 10.02 22.29 0.22 -1.34 16 24 C -0.12 -2.35 10.02 22.27 0.22 -2.13 16 25 C -0.09 -2.41 9.75 22.51 0.22 -2.20 16 26 C -0.01 -0.24 3.94 -21.11 -0.08 -0.33 16 27 C 0.27 11.12 12.10 88.31 1.07 12.19 16 28 N -0.48 -21.41 18.55 19.02 0.35 -21.05 16 29 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 30 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.40 16.08 6.57 -92.71 -0.61 15.47 16 34 H 0.13 3.39 6.40 -2.91 -0.02 3.38 16 35 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -78.97 354.38 5.31 -73.66 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.46 Total: 23.40 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.52 Total: -5.65 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -1.66 Total: -109.74 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.65 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -78.97 5.31 -73.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.084 kcal (2) G-P(sol) polarization free energy of solvation -78.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds