Wall clock time and date at job start Tue Mar 31 2020 12:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47485 * 2 1 4 4 C 1.37101 * 119.99606 * 96.07251 * 3 2 1 5 5 H 1.07996 * 119.99786 * 176.19512 * 4 3 2 6 6 C 1.38953 * 120.00244 * 356.20306 * 4 3 2 7 7 N 1.31407 * 119.99797 * 326.53712 * 6 4 3 8 8 Si 1.86802 * 119.99961 * 146.53230 * 6 4 3 9 9 H 1.48501 * 109.46854 * 94.98908 * 8 6 4 10 10 H 1.48497 * 109.46982 * 214.98717 * 8 6 4 11 11 H 1.48496 * 109.47209 * 334.98852 * 8 6 4 12 12 C 1.34773 * 120.00152 * 276.08062 * 3 2 1 13 13 O 1.21288 * 120.00392 * 5.87757 * 12 3 2 14 14 C 1.50705 * 119.99893 * 185.88009 * 12 3 2 15 15 H 1.08995 * 110.53894 * 42.77930 * 14 12 3 16 16 C 1.54622 * 110.48557 * 165.39580 * 14 12 3 17 17 C 1.54481 * 101.76499 * 143.47493 * 16 14 12 18 18 N 1.46768 * 105.55214 * 334.53627 * 17 16 14 19 19 C 1.40022 * 124.35288 * 197.07750 * 18 17 16 20 20 C 1.38850 * 120.04419 * 359.72580 * 19 18 17 21 21 C 1.38113 * 119.95034 * 179.72292 * 20 19 18 22 22 C 1.38478 * 120.04727 * 0.55109 * 21 20 19 23 23 F 1.35101 * 119.95344 * 179.74568 * 22 21 20 24 24 C 1.38470 * 120.09037 * 359.72630 * 22 21 20 25 25 C 1.38114 * 120.04530 * 359.97438 * 24 22 21 26 26 C 1.34631 * 111.17767 * 17.05797 * 18 17 16 27 27 O 1.21292 * 124.90684 * 179.57921 * 26 18 17 28 28 H 1.09000 * 109.46578 * 307.28079 * 1 2 3 29 29 H 1.08996 * 109.47204 * 67.28179 * 1 2 3 30 30 H 1.09001 * 109.47541 * 187.28727 * 1 2 3 31 31 H 1.09009 * 109.46795 * 240.00284 * 2 1 3 32 32 H 1.08997 * 109.47277 * 120.00749 * 2 1 3 33 33 H 0.97002 * 120.00218 * 179.97438 * 7 6 4 34 34 H 1.09002 * 110.97072 * 25.35565 * 16 14 12 35 35 H 1.09002 * 110.97121 * 261.58849 * 16 14 12 36 36 H 1.08998 * 110.24755 * 93.58291 * 17 16 14 37 37 H 1.09003 * 110.25082 * 215.49291 * 17 16 14 38 38 H 1.08002 * 120.02456 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.98109 * 180.30158 * 21 20 19 40 40 H 1.07998 * 119.98127 * 180.02562 * 24 22 21 41 41 H 1.07999 * 120.02452 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3654 1.9855 1.1807 5 1 2.7831 2.9813 1.1752 6 6 2.1797 1.3166 2.3844 7 7 1.1641 0.4955 2.5299 8 14 3.3737 1.5846 3.7957 9 1 2.8405 2.6323 4.7031 10 1 3.5421 0.3162 4.5493 11 1 4.6877 2.0184 3.2568 12 6 2.1265 2.0577 -1.1606 13 8 1.7205 1.5632 -2.1910 14 6 2.7520 3.4287 -1.1781 15 1 3.6432 3.4505 -0.5510 16 6 3.0985 3.8470 -2.6258 17 6 2.7903 5.3605 -2.5987 18 7 1.7941 5.5403 -1.5360 19 6 0.9885 6.6765 -1.3922 20 6 1.1081 7.7313 -2.2872 21 6 0.3086 8.8487 -2.1469 22 6 -0.6040 8.9223 -1.1079 23 9 -1.3816 10.0184 -0.9695 24 6 -0.7208 7.8739 -0.2110 25 6 0.0726 6.7521 -0.3513 26 6 1.7560 4.4709 -0.7191 27 8 1.0283 4.3594 0.2449 28 1 -0.3632 0.6225 0.8177 29 1 -0.3633 0.3969 -0.9479 30 1 -0.3634 -1.0193 0.1304 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.0346 0.0282 3.3700 34 1 2.4605 3.3318 -3.3440 35 1 4.1515 3.6672 -2.8424 36 1 3.6937 5.9253 -2.3683 37 1 2.3810 5.6794 -3.5573 38 1 1.8231 7.6763 -3.0948 39 1 0.3978 9.6674 -2.8457 40 1 -1.4333 7.9330 0.5985 41 1 -0.0191 5.9344 0.3482 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068231850.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:25 Heat of formation + Delta-G solvation = -59.870868 kcal Electronic energy + Delta-G solvation = -27446.609132 eV Core-core repulsion = 23435.062427 eV Total energy + Delta-G solvation = -4011.546705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.80805 -41.01381 -38.88489 -37.79858 -36.30459 -35.00949 -32.73380 -31.63769 -31.16265 -30.01403 -28.48729 -27.55774 -24.85088 -23.65690 -23.11376 -22.38407 -20.93846 -20.06589 -18.95786 -17.73937 -17.36361 -17.07457 -16.70400 -16.09157 -15.66336 -15.50441 -14.94924 -14.44369 -14.38998 -14.29127 -13.96877 -13.60285 -13.54741 -13.23863 -13.08035 -13.01580 -12.69764 -12.38132 -12.30903 -12.08276 -11.84336 -11.55942 -11.28752 -11.11497 -11.06819 -10.84174 -10.69172 -10.42459 -10.38065 -9.96105 -9.67390 -9.20721 -9.15529 -8.87655 -8.54313 -7.89180 -7.75032 -6.49949 -3.77269 1.11419 1.21427 2.74439 2.91943 3.09636 3.21956 3.24642 3.66871 3.74634 4.07017 4.31658 4.48391 4.56120 4.69517 4.80362 4.83484 5.05312 5.15891 5.17726 5.22155 5.33991 5.41837 5.61827 5.73411 5.88077 6.04393 6.08033 6.08449 6.17910 6.34765 6.39733 6.48575 6.56774 6.69240 6.77926 6.96469 7.06396 7.16803 7.30974 7.39356 7.66113 7.74712 8.35532 8.39262 9.03666 9.45424 9.86066 10.52999 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.004101 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.659509 B = 6826.218494 C = 7576.240901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.131 3.869 3 N -0.415 5.415 4 C -0.332 4.332 5 H 0.102 0.898 6 C 0.048 3.952 7 N -0.835 5.835 8 Si 0.901 3.099 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.452 3.548 13 O -0.609 6.609 14 C -0.121 4.121 15 H 0.126 0.874 16 C -0.119 4.119 17 C 0.098 3.902 18 N -0.567 5.567 19 C 0.175 3.825 20 C -0.140 4.140 21 C -0.124 4.124 22 C 0.057 3.943 23 F -0.146 7.146 24 C -0.119 4.119 25 C -0.134 4.134 26 C 0.528 3.472 27 O -0.464 6.464 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.269 0.731 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 11.331 -7.161 13.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 N -0.130 5.130 4 C -0.459 4.459 5 H 0.119 0.881 6 C -0.159 4.159 7 N -0.471 5.471 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.193 1.193 12 C 0.239 3.761 13 O -0.497 6.497 14 C -0.146 4.146 15 H 0.143 0.857 16 C -0.157 4.157 17 C -0.024 4.024 18 N -0.292 5.292 19 C 0.079 3.921 20 C -0.161 4.161 21 C -0.144 4.144 22 C 0.037 3.963 23 F -0.125 7.125 24 C -0.139 4.139 25 C -0.154 4.154 26 C 0.316 3.684 27 O -0.335 6.335 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.629 10.824 -6.905 13.105 hybrid contribution 0.384 0.468 0.923 1.104 sum 3.013 11.292 -5.981 13.128 Atomic orbital electron populations 1.21863 0.96577 1.00216 1.01059 1.21289 0.94689 0.82842 1.00323 1.43845 1.52598 1.11214 1.05344 1.19506 1.41299 1.02220 0.82877 0.88064 1.25082 0.95719 0.96694 0.98430 1.70274 1.22771 1.27871 1.26176 0.86353 0.81838 0.78017 0.81182 1.20425 1.20641 1.19336 1.18912 0.86650 0.86062 0.84426 1.90515 1.56047 1.69931 1.33245 1.21822 0.99710 0.94743 0.98316 0.85680 1.22609 1.03764 0.92588 0.96695 1.22280 0.91174 0.98380 0.90569 1.46040 1.37096 1.15842 1.30222 1.17882 0.92070 0.86630 0.95495 1.20580 1.02276 0.92854 1.00408 1.20829 0.96311 0.99180 0.98065 1.17644 0.94833 0.85129 0.98743 1.91464 1.73392 1.51942 1.95712 1.21066 1.00755 0.92615 0.99447 1.21679 0.95070 0.99802 0.98880 1.20928 0.83783 0.81906 0.81798 1.90706 1.39734 1.77417 1.25606 0.90050 0.95135 0.94512 0.94195 0.88967 0.92058 0.87822 0.88978 0.90402 0.89853 0.84799 0.84676 0.84500 0.81473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.63 37.16 0.36 -2.94 16 2 C 0.13 3.18 5.22 -4.04 -0.02 3.15 16 3 N -0.42 -10.32 2.64 -114.81 -0.30 -10.62 16 4 C -0.33 -8.31 8.02 -14.93 -0.12 -8.43 16 5 H 0.10 2.48 5.51 -52.49 -0.29 2.19 16 6 C 0.05 1.18 4.73 -17.47 -0.08 1.10 16 7 N -0.83 -21.14 9.26 55.50 0.51 -20.62 16 8 Si 0.90 19.09 29.66 -169.99 -5.04 14.05 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 C 0.45 10.59 6.77 -10.98 -0.07 10.52 16 13 O -0.61 -15.39 15.14 5.55 0.08 -15.31 16 14 C -0.12 -2.25 2.35 -91.78 -0.22 -2.47 16 15 H 0.13 2.17 7.20 -51.93 -0.37 1.80 16 16 C -0.12 -1.64 6.58 -25.10 -0.17 -1.81 16 17 C 0.10 1.12 6.37 -3.12 -0.02 1.10 16 18 N -0.57 -8.79 3.15 -112.18 -0.35 -9.15 16 19 C 0.17 2.59 6.61 -83.66 -0.55 2.04 16 20 C -0.14 -1.63 9.40 -39.40 -0.37 -2.00 16 21 C -0.12 -1.41 10.02 -39.54 -0.40 -1.80 16 22 C 0.06 0.74 7.30 -39.41 -0.29 0.45 16 23 F -0.15 -1.92 17.27 2.25 0.04 -1.88 16 24 C -0.12 -1.65 10.02 -39.54 -0.40 -2.04 16 25 C -0.13 -2.13 9.31 -39.40 -0.37 -2.50 16 26 C 0.53 10.25 7.02 -10.76 -0.08 10.18 16 27 O -0.46 -10.67 12.87 5.55 0.07 -10.60 16 28 H 0.08 2.13 6.80 -51.93 -0.35 1.77 16 29 H 0.03 0.73 8.02 -51.93 -0.42 0.31 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.94 7.70 -51.92 -0.40 0.54 16 32 H 0.09 2.27 5.82 -51.93 -0.30 1.97 16 33 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.10 1.64 6.88 -51.93 -0.36 1.29 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.77 7.46 -51.93 -0.39 0.38 16 38 H 0.13 1.18 6.86 -52.49 -0.36 0.82 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.17 3.09 5.21 -52.49 -0.27 2.81 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -30.19 336.96 -7.46 -37.65 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.76 Total: 6.85 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -2.79 Total: 4.56 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.14 Total: -40.39 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.16 Total: -25.91 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.04 Total: 14.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.19 -7.46 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231850.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.226 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds