Wall clock time and date at job start Tue Mar 31 2020 13:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47112 * 269.99436 * 3 2 1 5 5 H 1.48500 * 109.47282 * 29.99458 * 3 2 1 6 6 H 1.48498 * 109.47323 * 149.99227 * 3 2 1 7 7 C 1.38803 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00056 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99628 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47043 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47362 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.46423 * 110.99866 * 311.30269 * 13 12 11 15 15 C 1.53387 * 108.65590 * 181.09818 * 14 13 12 16 16 H 1.08993 * 109.76898 * 308.60479 * 15 14 13 17 17 C 1.50697 * 109.77271 * 187.86620 * 15 14 13 18 18 N 1.34778 * 119.99776 * 180.02562 * 17 15 14 19 19 O 1.21276 * 120.00088 * 359.97438 * 17 15 14 20 20 C 1.53053 * 107.92329 * 68.26217 * 15 14 13 21 21 C 1.50803 * 109.65612 * 312.71716 * 20 15 14 22 22 C 1.38619 * 118.12424 * 195.27793 * 21 20 15 23 23 C 1.38054 * 120.48693 * 180.17035 * 22 21 20 24 24 C 1.38312 * 119.88866 * 0.31069 * 23 22 21 25 25 C 1.37802 * 119.95382 * 359.73971 * 24 23 22 26 26 C 1.38373 * 122.01411 * 15.55216 * 21 20 15 27 27 H 0.96997 * 120.00490 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47155 * 60.00327 * 10 9 7 29 29 H 1.08997 * 109.47576 * 300.00158 * 10 9 7 30 30 H 1.09002 * 109.47239 * 60.00211 * 11 10 9 31 31 H 1.09003 * 109.47577 * 300.00329 * 11 10 9 32 32 H 1.08995 * 109.47398 * 60.00315 * 12 11 10 33 33 H 1.09001 * 109.47143 * 299.99815 * 12 11 10 34 34 H 1.09004 * 109.61101 * 300.84723 * 14 13 12 35 35 H 1.09004 * 109.60965 * 61.34802 * 14 13 12 36 36 H 0.96993 * 120.00494 * 0.02562 * 18 17 15 37 37 H 0.97004 * 119.99813 * 179.97438 * 18 17 15 38 38 H 1.08992 * 109.43983 * 192.66172 * 20 15 14 39 39 H 1.09003 * 109.44187 * 72.77114 * 20 15 14 40 40 H 1.07993 * 119.75419 * 0.45493 * 22 21 20 41 41 H 1.08002 * 120.05281 * 180.14971 * 23 22 21 42 42 H 1.08003 * 120.01943 * 179.76789 * 24 23 22 43 43 H 1.07996 * 119.79248 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3242 0.0012 12 6 3.1514 -6.3077 0.0018 13 7 2.6363 -7.6834 0.0018 14 6 1.6069 -7.8582 1.0283 15 6 1.1279 -9.3151 0.9997 16 1 0.8549 -9.5935 -0.0181 17 6 -0.0624 -9.4783 1.9094 18 7 -0.6503 -10.6841 2.0401 19 8 -0.4908 -8.5250 2.5245 20 6 2.2780 -10.1988 1.4886 21 6 3.5540 -9.8038 0.7886 22 6 4.6284 -10.6778 0.8463 23 6 5.8210 -10.3636 0.2259 24 6 5.9497 -9.1659 -0.4538 25 6 4.8863 -8.2916 -0.5147 26 6 3.6760 -8.6062 0.1063 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8906 29 1 3.1245 -3.7314 -0.8894 30 1 1.3706 -5.4847 -0.8886 31 1 1.3710 -5.4841 0.8914 32 1 3.7599 -6.1473 0.8918 33 1 3.7601 -6.1481 -0.8882 34 1 2.0253 -7.6301 2.0087 35 1 0.7681 -7.1933 0.8223 36 1 -0.3070 -11.4468 1.5490 37 1 -1.4163 -10.7893 2.6259 38 1 2.0521 -11.2423 1.2695 39 1 2.4004 -10.0727 2.5643 40 1 4.5304 -11.6134 1.3768 41 1 6.6528 -11.0508 0.2733 42 1 6.8829 -8.9163 -0.9368 43 1 4.9896 -7.3573 -1.0464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072515803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:37 Heat of formation + Delta-G solvation = -46.972028 kcal Electronic energy + Delta-G solvation = -23975.592356 eV Core-core repulsion = 20530.818162 eV Total energy + Delta-G solvation = -3444.774193 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94436 -40.28804 -38.12092 -35.98648 -34.65760 -34.57428 -33.76370 -31.42826 -30.53698 -28.03770 -27.42998 -25.61477 -25.37870 -23.22158 -21.92857 -21.69879 -20.36545 -19.60410 -18.57907 -18.07721 -17.64477 -17.08090 -16.91035 -16.60015 -16.41438 -16.20770 -15.55001 -15.31490 -15.20867 -14.86894 -14.70845 -14.47499 -14.46173 -13.92975 -13.83934 -13.57096 -13.23733 -13.10476 -12.92330 -12.72970 -12.48882 -12.38774 -12.28011 -12.16115 -11.70237 -11.63588 -11.44227 -11.15535 -10.97001 -10.79169 -10.66089 -10.34123 -9.62101 -8.69569 -8.63961 -8.38446 -6.15594 0.48592 0.52076 1.29872 1.38766 1.47771 1.57202 1.70339 2.26075 2.33162 2.74155 2.95691 3.00433 3.29905 3.41277 3.68091 3.77779 3.85014 4.00635 4.08767 4.15067 4.19866 4.25619 4.32422 4.37938 4.44779 4.52263 4.61291 4.69218 4.70900 4.73116 4.80630 4.91172 4.98856 5.05140 5.18232 5.19519 5.29841 5.38215 5.56512 5.71133 5.89146 5.89661 6.01654 6.16853 6.37592 6.43438 7.03288 7.33167 8.71192 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.002910 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.832304 B = 9621.055312 C =11373.120500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.199 6.199 10 C -0.086 4.086 11 C -0.090 4.090 12 C 0.075 3.925 13 N -0.494 5.494 14 C 0.072 3.928 15 C -0.103 4.103 16 H 0.123 0.877 17 C 0.525 3.475 18 N -0.830 5.830 19 O -0.591 6.591 20 C -0.058 4.058 21 C -0.138 4.138 22 C -0.090 4.090 23 C -0.154 4.154 24 C -0.100 4.100 25 C -0.177 4.177 26 C 0.107 3.893 27 H 0.272 0.728 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.420 0.580 37 H 0.409 0.591 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.082 -29.447 1.216 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.030 5.970 10 C -0.236 4.236 11 C -0.129 4.129 12 C -0.052 4.052 13 N -0.206 5.206 14 C -0.055 4.055 15 C -0.125 4.125 16 H 0.141 0.859 17 C 0.310 3.690 18 N -0.394 5.394 19 O -0.471 6.471 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.173 4.173 24 C -0.119 4.119 25 C -0.198 4.198 26 C 0.008 3.992 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.252 0.748 37 H 0.241 0.759 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.357 -28.847 1.091 29.791 hybrid contribution 1.474 1.453 0.534 2.138 sum 8.831 -27.394 1.625 28.829 Atomic orbital electron populations 1.70166 1.07771 1.28585 1.47971 1.26112 0.96051 1.03231 0.93713 0.84983 0.78135 0.76173 0.78911 1.19097 1.19935 1.18653 1.23042 0.94766 0.91843 1.58922 0.90763 1.84738 1.13959 1.01302 1.97044 1.23107 1.00254 0.96996 1.03202 1.21308 0.97770 0.90972 1.02843 1.22199 0.96176 0.84511 1.02321 1.58099 1.12238 1.03870 1.46435 1.21907 0.94488 0.96995 0.92118 1.21365 0.93843 0.96130 1.01168 0.85869 1.20549 0.84107 0.83125 0.81238 1.43628 1.35389 1.10472 1.49890 1.90799 1.66236 1.41196 1.48873 1.20494 0.88968 1.00489 0.99535 1.19601 0.97610 0.95161 1.01736 1.21222 0.91866 0.99315 0.98455 1.21323 0.98654 0.97602 0.99732 1.21228 0.98401 0.94015 0.98251 1.21326 0.92779 1.01915 1.03785 1.18898 0.89978 0.93382 0.96893 0.91947 0.92029 0.91193 0.91036 0.92046 0.93649 0.88541 0.94452 0.90239 0.74838 0.75918 0.86212 0.90458 0.83229 0.83803 0.84418 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 44.93 29.55 68.60 2.03 46.96 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.54 -31.96 9.50 67.96 0.65 -31.32 16 8 H 0.07 4.22 7.80 -2.91 -0.02 4.20 16 9 S -0.20 -11.07 21.44 -56.49 -1.21 -12.28 16 10 C -0.09 -3.61 5.67 71.98 0.41 -3.21 16 11 C -0.09 -3.14 4.58 30.59 0.14 -3.00 16 12 C 0.07 2.10 4.33 86.30 0.37 2.47 16 13 N -0.49 -12.78 4.65 -695.82 -3.24 -16.01 16 14 C 0.07 1.91 3.42 86.52 0.30 2.20 16 15 C -0.10 -1.91 2.74 -11.39 -0.03 -1.94 16 16 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 17 C 0.53 10.72 7.39 87.66 0.65 11.37 16 18 N -0.83 -8.19 8.80 -173.54 -1.53 -9.72 16 19 O -0.59 -19.04 16.74 -3.02 -0.05 -19.09 16 20 C -0.06 -0.78 5.03 29.90 0.15 -0.63 16 21 C -0.14 -2.48 5.74 -19.71 -0.11 -2.59 16 22 C -0.09 -1.26 9.63 22.32 0.21 -1.05 16 23 C -0.15 -2.21 10.05 22.24 0.22 -1.99 16 24 C -0.10 -1.73 10.03 22.18 0.22 -1.51 16 25 C -0.18 -3.83 9.02 22.50 0.20 -3.63 16 26 C 0.11 2.46 5.81 38.30 0.22 2.68 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.07 2.81 8.14 -2.40 -0.02 2.79 16 30 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.06 2.28 6.35 -2.39 -0.02 2.27 16 32 H 0.05 1.28 8.12 -2.39 -0.02 1.27 16 33 H 0.10 2.48 6.35 -2.39 -0.02 2.47 16 34 H 0.04 1.09 8.11 -2.38 -0.02 1.07 16 35 H 0.08 2.51 6.03 -2.38 -0.01 2.49 16 36 H 0.42 0.97 8.72 -92.71 -0.81 0.17 16 37 H 0.41 3.54 8.93 -92.70 -0.83 2.71 16 38 H 0.12 0.68 8.08 -2.39 -0.02 0.66 16 39 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 40 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 43 H 0.12 2.65 5.99 -2.91 -0.02 2.63 16 Total: -1.00 -79.53 361.77 -0.24 -79.77 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -0.60 Total: 17.35 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 4.07 Total: -30.86 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -4.48 Total: -81.84 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -1.21 Total: -12.28 kcal Total: -79.53 -0.24 -79.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072515803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.795 kcal (2) G-P(sol) polarization free energy of solvation -79.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds