Wall clock time and date at job start Tue Mar 31 2020 12:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46919 * 2 1 4 4 C 1.46499 * 119.99925 * 269.99853 * 3 2 1 5 5 C 1.50697 * 109.47340 * 270.00235 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99810 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47597 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46799 * 120.00233 * 9 7 5 12 12 H 1.48503 * 109.47078 * 239.99986 * 9 7 5 13 13 C 1.34777 * 119.99880 * 90.00602 * 3 2 1 14 14 O 1.21603 * 119.99960 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99726 * 0.26799 * 13 3 2 16 16 C 1.40851 * 119.99560 * 179.72622 * 15 13 3 17 17 C 1.40235 * 126.07632 * 359.69374 * 16 15 13 18 18 N 1.30839 * 108.33766 * 179.87871 * 17 16 15 19 19 N 1.40066 * 108.36584 * 0.37860 * 18 17 16 20 20 C 1.46504 * 126.05996 * 179.73431 * 19 18 17 21 21 C 1.53002 * 109.47182 * 305.02877 * 20 19 18 22 22 F 1.39900 * 109.47098 * 59.99941 * 21 20 19 23 23 F 1.39902 * 109.46932 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.46853 * 299.99865 * 21 20 19 25 25 C 1.35728 * 126.07346 * 180.02562 * 16 15 13 26 26 H 1.09010 * 109.47071 * 299.99819 * 1 2 3 27 27 H 1.09004 * 109.47223 * 59.99467 * 1 2 3 28 28 H 1.08992 * 109.47174 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47033 * 240.00502 * 2 1 3 30 30 H 1.09001 * 109.47466 * 120.00073 * 2 1 3 31 31 H 1.08994 * 109.47013 * 30.00340 * 4 3 2 32 32 H 1.09005 * 109.46881 * 150.00475 * 4 3 2 33 33 H 0.96999 * 119.99771 * 180.02562 * 8 7 5 34 34 H 0.97000 * 120.00483 * 359.73178 * 15 13 3 35 35 H 1.07990 * 125.82947 * 359.97438 * 17 16 15 36 36 H 1.08999 * 109.46786 * 65.02723 * 20 19 18 37 37 H 1.08997 * 109.47354 * 185.02572 * 20 19 18 38 38 H 1.08000 * 126.21589 * 359.92603 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3495 3.1275 -3.6171 9 14 5.9137 2.0976 -3.4164 10 1 6.6011 1.2415 -2.4166 11 1 5.9216 1.4191 -4.7373 12 1 6.6209 3.3990 -3.5241 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1629 1.1672 15 7 2.0236 1.3793 2.3344 16 6 2.2640 2.0413 3.5541 17 6 2.7353 3.3537 3.7025 18 7 2.8293 3.6153 4.9811 19 7 2.4302 2.4780 5.6947 20 6 2.3914 2.3447 7.1531 21 6 3.7670 2.6804 7.7328 22 9 4.1081 3.9941 7.3935 23 9 3.7297 2.5536 9.1255 24 9 4.7208 1.8009 7.2093 25 6 2.0866 1.5202 4.7948 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5817 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 3.6756 3.5179 -4.4430 34 1 1.7003 0.4648 2.3344 35 1 2.9776 4.0331 2.8988 36 1 1.6482 3.0299 7.5609 37 1 2.1257 1.3212 7.4175 38 1 1.7352 0.5252 5.0247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078608255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:27 Heat of formation + Delta-G solvation = -87.376857 kcal Electronic energy + Delta-G solvation = -26951.330402 eV Core-core repulsion = 22416.654169 eV Total energy + Delta-G solvation = -4534.676233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.36193 -47.93924 -47.76590 -41.29682 -39.41480 -35.60290 -34.70219 -33.50671 -32.62216 -30.17899 -29.87650 -28.24797 -26.64512 -24.02464 -23.13302 -23.01276 -21.52363 -20.94269 -19.36294 -18.80662 -18.72836 -17.96375 -17.51248 -16.82671 -16.39936 -15.89903 -15.22006 -14.93571 -14.79576 -14.61246 -14.48620 -14.26285 -14.20735 -13.96986 -13.94361 -13.89204 -13.63890 -13.32415 -13.07181 -12.76794 -12.57272 -12.32983 -12.08114 -11.77858 -11.21621 -10.94525 -10.85458 -10.74576 -10.54854 -10.51035 -10.11216 -9.62495 -9.47640 -9.26644 -8.42604 -7.90210 -7.43576 -6.03398 -4.07783 1.58861 1.97491 2.42333 2.88232 3.19584 3.31191 3.38157 3.39474 3.44159 3.57745 3.86515 3.98592 4.34874 4.40779 4.50733 4.56798 4.69050 5.13208 5.22535 5.30970 5.52200 5.54007 5.58119 5.69797 5.92261 6.16592 6.38394 6.43816 6.72956 6.78401 7.10419 7.34157 7.51387 7.58288 7.73407 7.94996 8.24023 8.58756 8.93501 9.24214 9.57823 11.04459 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.002968 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.937457 B = 9430.610810 C =10312.172372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.703 3.297 14 O -0.572 6.572 15 N -0.670 5.670 16 C 0.057 3.943 17 C 0.068 3.932 18 N -0.276 5.276 19 N -0.397 5.397 20 C 0.111 3.889 21 C 0.442 3.558 22 F -0.163 7.163 23 F -0.181 7.181 24 F -0.178 7.178 25 C -0.004 4.004 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.402 0.598 35 H 0.215 0.785 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 -7.980 21.483 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.341 5.341 4 C 0.142 3.858 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.405 3.595 14 O -0.449 6.449 15 N -0.320 5.320 16 C -0.049 4.049 17 C -0.121 4.121 18 N -0.096 5.096 19 N -0.184 5.184 20 C -0.015 4.015 21 C 0.386 3.614 22 F -0.145 7.145 23 F -0.163 7.163 24 F -0.159 7.159 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.238 0.762 35 H 0.232 0.768 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.066 -6.197 22.167 23.803 hybrid contribution 0.792 -1.371 -0.867 1.806 sum -5.274 -7.569 21.300 23.212 Atomic orbital electron populations 1.22255 0.96691 1.01432 1.02587 1.21370 0.93527 0.84356 1.02478 1.47577 1.67122 1.13223 1.06159 1.19236 0.96205 0.93547 0.76847 1.21499 0.96999 1.31786 1.06187 0.92412 1.24920 0.97800 0.94930 0.96416 1.69937 1.35595 1.33482 1.14377 0.86455 0.84721 0.78075 0.78229 1.19849 1.21041 1.20865 1.15823 0.79118 0.84678 0.79874 1.90765 1.51969 1.16841 1.85311 1.42309 1.70660 1.16613 1.02430 1.17562 1.08121 0.94127 0.85084 1.24848 0.97594 0.95905 0.93756 1.77554 1.21339 1.05696 1.04987 1.47637 1.56133 1.11017 1.03644 1.22555 0.93364 1.07431 0.78112 1.20741 0.88972 0.75781 0.75896 1.93291 1.93419 1.35977 1.91775 1.93207 1.96782 1.95779 1.30494 1.93231 1.67414 1.68966 1.86323 1.21631 1.09255 0.96065 0.87862 0.93073 0.91782 0.92132 0.89506 0.92455 0.94809 0.93634 0.92780 0.76235 0.76841 0.85642 0.84588 0.80620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.58 5.90 -4.04 -0.02 1.56 16 3 N -0.61 -12.26 2.46 -180.80 -0.44 -12.70 16 4 C 0.26 6.60 5.16 -5.20 -0.03 6.58 16 5 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.70 14.32 8.25 -86.92 -0.72 13.60 16 14 O -0.57 -13.90 13.08 5.27 0.07 -13.83 16 15 N -0.67 -10.22 5.34 -14.39 -0.08 -10.29 16 16 C 0.06 0.85 6.90 -83.86 -0.58 0.27 16 17 C 0.07 1.17 10.84 -17.22 -0.19 0.98 16 18 N -0.28 -4.30 11.50 30.70 0.35 -3.95 16 19 N -0.40 -4.57 3.63 -61.02 -0.22 -4.79 16 20 C 0.11 0.77 6.51 -4.04 -0.03 0.74 16 21 C 0.44 4.20 3.28 37.16 0.12 4.32 16 22 F -0.16 -2.05 16.28 2.25 0.04 -2.01 16 23 F -0.18 -1.52 17.32 2.25 0.04 -1.49 16 24 F -0.18 -2.05 17.24 2.25 0.04 -2.01 16 25 C 0.00 -0.04 11.52 -16.67 -0.19 -0.23 16 26 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.40 4.69 6.55 -40.82 -0.27 4.42 16 35 H 0.22 4.15 5.91 -52.49 -0.31 3.84 16 36 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.14 0.39 8.07 -51.93 -0.42 -0.03 16 38 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -34.97 341.62 -5.22 -40.19 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.21 Total: 1.70 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -1.67 Total: 12.78 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.35 Total: -57.27 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.07 Total: -13.83 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.11 Total: -5.51 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.97 -5.22 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078608255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.184 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds