Wall clock time and date at job start Tue Mar 31 2020 12:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42899 * 109.46958 * 106.49312 * 3 2 1 5 5 C 1.36028 * 116.99850 * 179.97438 * 4 3 2 6 6 C 1.38520 * 120.05803 * 0.30240 * 5 4 3 7 7 C 1.38252 * 120.04097 * 180.22813 * 6 5 4 8 8 C 1.38469 * 120.14801 * 359.49076 * 7 6 5 9 9 F 1.35105 * 119.94759 * 180.25499 * 8 7 6 10 10 C 1.38388 * 120.11124 * 0.23373 * 8 7 6 11 11 C 1.38709 * 119.96203 * 0.02562 * 10 8 7 12 12 N 1.40161 * 120.07607 * 180.02562 * 11 10 8 13 13 C 1.34774 * 119.99825 * 24.77550 * 12 11 10 14 14 O 1.21589 * 120.00083 * 5.62779 * 13 12 11 15 15 N 1.34779 * 119.99895 * 185.62322 * 13 12 11 16 16 C 1.46494 * 119.99874 * 0.02562 * 15 13 12 17 17 C 1.53001 * 109.47511 * 89.99957 * 16 15 13 18 18 C 1.46496 * 119.99810 * 180.02562 * 15 13 12 19 19 C 1.50700 * 109.47257 * 90.00085 * 18 15 13 20 20 H 1.07993 * 119.99814 * 0.02562 * 19 18 15 21 21 C 1.37883 * 119.99789 * 179.97438 * 19 18 15 22 22 N 1.31510 * 120.00160 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99710 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47246 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46942 * 120.00093 * 23 21 19 26 26 H 1.48500 * 109.47448 * 239.99916 * 23 21 19 27 27 H 4.38444 * 5.44494 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47175 * 346.49304 * 3 2 1 29 29 H 1.09001 * 109.47087 * 226.49111 * 3 2 1 30 30 H 1.08005 * 119.98290 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.92779 * 179.76847 * 7 6 5 32 32 H 1.07994 * 120.02146 * 180.02562 * 10 8 7 33 33 H 0.96998 * 119.99760 * 204.77335 * 12 11 10 34 34 H 1.09006 * 109.47021 * 209.99631 * 16 15 13 35 35 H 1.09003 * 109.47163 * 329.99516 * 16 15 13 36 36 H 1.09006 * 109.46712 * 299.99864 * 17 16 15 37 37 H 1.08997 * 109.46841 * 59.99754 * 17 16 15 38 38 H 1.08996 * 109.47219 * 180.02562 * 17 16 15 39 39 H 1.09007 * 109.47330 * 210.00440 * 18 15 13 40 40 H 1.09000 * 109.47385 * 329.99855 * 18 15 13 41 41 H 0.97001 * 120.00034 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.3834 -1.2918 5 6 4.4706 0.4351 -1.4626 6 6 5.3157 0.1183 -0.4118 7 6 6.6862 0.1755 -0.5843 8 6 7.2183 0.5392 -1.8099 9 9 8.5582 0.5888 -1.9755 10 6 6.3798 0.8514 -2.8656 11 6 5.0040 0.8007 -2.6961 12 7 4.1526 1.1160 -3.7638 13 6 4.5853 0.9813 -5.0331 14 8 5.6754 0.4906 -5.2550 15 7 3.8096 1.3905 -6.0565 16 6 2.4964 1.9822 -5.7891 17 6 2.6422 3.4969 -5.6299 18 6 4.2797 1.2436 -7.4362 19 6 3.8468 -0.0958 -7.9745 20 1 3.2781 -0.7699 -7.3513 21 6 4.1761 -0.4600 -9.2629 22 7 4.8683 0.3612 -10.0219 23 14 3.6401 -2.1205 -9.9299 24 1 2.8797 -2.8517 -8.8848 25 1 2.7762 -1.9200 -11.1210 26 1 4.8379 -2.9096 -10.3144 27 1 -1.0501 0.0002 0.0001 28 1 3.0098 -0.9984 0.2400 29 1 3.0090 0.7083 0.7453 30 1 4.9037 -0.1697 0.5442 31 1 7.3434 -0.0683 0.2374 32 1 6.7963 1.1344 -3.8210 33 1 3.2520 1.4310 -3.5893 34 1 1.8250 1.7673 -6.6206 35 1 2.0867 1.5582 -4.8723 36 1 3.3137 3.7118 -4.7985 37 1 3.0519 3.9208 -6.5467 38 1 1.6652 3.9370 -5.4305 39 1 3.8548 2.0370 -8.0513 40 1 5.3674 1.3098 -7.4584 41 1 5.0996 0.1051 -10.9284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078620250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:06 Heat of formation + Delta-G solvation = -12.715936 kcal Electronic energy + Delta-G solvation = -26567.214999 eV Core-core repulsion = 22557.713086 eV Total energy + Delta-G solvation = -4009.501914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.68178 -40.76508 -39.45429 -37.41535 -35.48136 -34.46891 -33.66981 -32.70399 -30.28756 -30.04036 -29.43558 -27.62502 -26.82571 -23.71111 -23.08892 -22.57143 -21.97206 -19.43431 -18.98934 -18.58463 -17.81652 -17.24353 -16.44722 -16.39424 -16.22168 -15.92932 -15.36933 -14.87548 -14.85600 -14.75508 -14.34908 -14.05955 -13.68486 -13.36284 -13.25799 -13.04908 -12.89698 -12.54757 -12.34695 -12.08323 -11.75871 -11.55536 -11.42345 -11.21856 -10.93916 -10.90068 -10.78729 -10.55224 -10.45556 -10.30328 -10.11526 -9.61697 -9.28824 -8.52917 -8.43089 -7.89117 -7.53952 -6.03908 -4.08297 1.19233 1.20316 1.96566 2.41946 3.04973 3.30714 3.32905 3.38538 3.42299 3.46437 3.93271 4.02457 4.25661 4.42634 4.50015 4.65364 4.68461 4.90341 4.93189 5.22501 5.26296 5.30268 5.38087 5.50032 5.56206 5.65344 5.74184 5.92009 5.97074 6.03488 6.18108 6.25580 6.44559 6.61823 6.74762 6.84110 7.16153 7.25539 7.33432 7.48472 7.64097 7.93795 8.23015 8.52736 8.92141 9.17450 9.57030 11.04045 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003934 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.803526 B = 7116.383177 C = 8362.493938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.201 4.201 3 C 0.175 3.825 4 O -0.310 6.310 5 C 0.074 3.926 6 C -0.158 4.158 7 C -0.148 4.148 8 C 0.092 3.908 9 F -0.139 7.139 10 C -0.137 4.137 11 C 0.196 3.804 12 N -0.683 5.683 13 C 0.698 3.302 14 O -0.566 6.566 15 N -0.603 5.603 16 C 0.106 3.894 17 C -0.170 4.170 18 C 0.260 3.740 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.224 0.776 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.171 0.829 33 H 0.409 0.591 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 3.623 22.082 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.201 4.201 3 C 0.101 3.899 4 O -0.224 6.224 5 C 0.027 3.973 6 C -0.178 4.178 7 C -0.169 4.169 8 C 0.071 3.929 9 F -0.117 7.117 10 C -0.159 4.159 11 C 0.097 3.903 12 N -0.332 5.332 13 C 0.400 3.600 14 O -0.443 6.443 15 N -0.337 5.337 16 C -0.019 4.019 17 C -0.229 4.229 18 C 0.141 3.859 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.241 0.759 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.188 0.812 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.260 3.366 21.416 22.308 hybrid contribution -0.720 -0.895 -0.194 1.165 sum -5.980 2.471 21.222 22.186 Atomic orbital electron populations 1.25033 0.95888 0.99943 0.96628 1.22262 0.93550 1.01347 1.02918 1.19240 0.84918 1.01213 0.84538 1.86064 1.18827 1.84762 1.32796 1.18506 0.82178 1.02536 0.94098 1.20735 0.92999 1.05711 0.98337 1.20766 0.95180 1.04308 0.96610 1.17380 0.77353 1.03811 0.94308 1.91492 1.29812 1.94270 1.96151 1.21384 0.90954 1.02662 1.00868 1.16564 0.89324 0.99377 0.85000 1.42903 1.16953 1.69546 1.03773 1.15931 0.84787 0.79586 0.79711 1.90860 1.21260 1.49257 1.82880 1.47639 1.16817 1.61638 1.07609 1.21398 0.86332 0.92627 1.01504 1.22239 1.01469 0.96679 1.02485 1.19266 0.96721 0.96804 0.73149 1.21492 1.35014 1.02082 0.97951 0.92426 1.24913 0.95014 0.97329 0.96754 1.69936 1.38561 1.36077 1.08775 0.86451 0.78391 0.83947 0.78674 1.19861 1.20989 1.20856 0.75893 0.89477 0.89516 0.84372 0.84661 0.81165 0.75336 0.89409 0.92376 0.93055 0.91746 0.92050 0.94650 0.93618 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 19.25 29.55 0.57 -0.69 16 2 C -0.20 -1.91 13.73 -37.12 -0.51 -2.42 16 3 C 0.18 1.50 5.21 34.37 0.18 1.68 16 4 O -0.31 -3.75 9.51 -19.83 -0.19 -3.94 16 5 C 0.07 0.97 6.70 -39.09 -0.26 0.70 16 6 C -0.16 -1.66 9.03 -39.47 -0.36 -2.01 16 7 C -0.15 -1.70 10.02 -39.49 -0.40 -2.09 16 8 C 0.09 1.34 7.29 -39.44 -0.29 1.06 16 9 F -0.14 -2.13 17.26 2.25 0.04 -2.09 16 10 C -0.14 -2.32 8.69 -39.35 -0.34 -2.66 16 11 C 0.20 3.14 6.45 -83.49 -0.54 2.61 16 12 N -0.68 -11.61 5.17 -14.11 -0.07 -11.68 16 13 C 0.70 14.93 8.08 -86.92 -0.70 14.22 16 14 O -0.57 -14.28 13.09 5.29 0.07 -14.21 16 15 N -0.60 -12.74 2.46 -180.80 -0.44 -13.18 16 16 C 0.11 1.69 5.94 -4.04 -0.02 1.67 16 17 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 18 C 0.26 6.72 5.16 -5.20 -0.03 6.69 16 19 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 23 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H 0.22 0.95 7.80 -54.09 -0.42 0.53 16 28 H 0.09 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.09 0.54 7.67 -51.93 -0.40 0.14 16 30 H 0.14 0.94 6.29 -52.48 -0.33 0.61 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.17 3.35 5.79 -52.49 -0.30 3.05 16 33 H 0.41 5.98 6.04 -40.82 -0.25 5.73 16 34 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 35 H 0.06 0.80 6.29 -51.93 -0.33 0.47 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16 40 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 361.98 15.07 5.45 5.45 Total: -1.00 -34.04 361.98 -7.05 -41.09 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.88 Total: 4.03 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.74 Total: 3.28 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.22 Total: -50.62 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.12 Total: -18.15 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.04 -7.05 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078620250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.374 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds