Wall clock time and date at job start Tue Mar 31 2020 13:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99936 * 2 1 4 4 C 1.52993 * 109.47025 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46918 * 65.00257 * 4 3 2 6 6 C 1.46499 * 119.99607 * 262.47535 * 5 4 3 7 7 C 1.50708 * 109.47107 * 270.00173 * 6 5 4 8 8 H 1.07992 * 119.99875 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99808 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00010 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99870 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47377 * 89.99679 * 11 9 7 13 13 H 1.48498 * 109.47415 * 209.99562 * 11 9 7 14 14 H 1.48503 * 109.47321 * 329.99746 * 11 9 7 15 15 C 1.34769 * 120.00227 * 82.47624 * 5 4 3 16 16 O 1.21643 * 120.00135 * 182.34259 * 15 5 4 17 17 C 1.47057 * 120.00246 * 2.35040 * 15 5 4 18 18 C 1.35875 * 125.43479 * 168.60608 * 17 15 5 19 19 C 1.41581 * 107.73944 * 180.02562 * 18 17 15 20 20 C 1.40128 * 133.34163 * 180.29166 * 19 18 17 21 21 C 1.36619 * 119.80862 * 180.17687 * 20 19 18 22 22 F 1.35102 * 119.71872 * 179.77622 * 21 20 19 23 23 C 1.39127 * 120.56058 * 359.49724 * 21 20 19 24 24 C 1.37655 * 120.62762 * 0.25575 * 23 21 20 25 25 C 1.39225 * 119.84499 * 0.02562 * 24 23 21 26 26 N 1.37567 * 133.15446 * 180.02562 * 25 24 23 27 27 H 0.97000 * 125.60962 * 359.97188 * 26 25 24 28 28 H 1.09006 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47723 * 300.00497 * 1 2 3 30 30 H 1.09003 * 109.46845 * 60.00305 * 1 2 3 31 31 H 1.09005 * 109.47080 * 59.99420 * 3 2 1 32 32 H 1.09004 * 109.46818 * 299.99981 * 3 2 1 33 33 H 1.08993 * 109.47723 * 305.00023 * 4 3 2 34 34 H 1.09001 * 109.47083 * 184.99752 * 4 3 2 35 35 H 1.08997 * 109.47200 * 30.00125 * 6 5 4 36 36 H 1.09005 * 109.47072 * 150.00269 * 6 5 4 37 37 H 0.97002 * 120.00047 * 180.02562 * 10 9 7 38 38 H 1.07994 * 126.12556 * 359.97438 * 18 17 15 39 39 H 1.07999 * 120.10200 * 359.95155 * 20 19 18 40 40 H 1.08002 * 119.68169 * 180.27599 * 23 21 20 41 41 H 1.08006 * 120.08205 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.2649 -0.8716 -1.2947 7 6 5.7165 -1.1029 -0.9623 8 1 6.3598 -0.2643 -0.7402 9 6 6.2233 -2.3850 -0.9417 10 7 5.4398 -3.4062 -1.2116 11 14 8.0227 -2.6716 -0.5303 12 1 8.1723 -2.8550 0.9357 13 1 8.5035 -3.8883 -1.2329 14 1 8.8230 -1.4992 -0.9666 15 6 4.1172 1.3138 -2.3620 16 8 4.4423 0.7912 -3.4113 17 6 3.8779 2.7636 -2.3059 18 6 4.1930 3.6525 -3.2840 19 6 3.8017 4.9388 -2.8404 20 6 3.8695 6.2157 -3.4136 21 6 3.4010 7.2965 -2.7215 22 9 3.4714 8.5274 -3.2740 23 6 2.8467 7.1396 -1.4551 24 6 2.7652 5.8941 -0.8747 25 6 3.2414 4.7786 -1.5583 26 7 3.2974 3.4391 -1.2499 27 1 2.9811 3.0354 -0.4266 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0902 35 1 3.6388 -1.3902 -0.5687 36 1 4.0556 -1.2540 -2.2938 37 1 5.7962 -4.3082 -1.1967 38 1 4.6593 3.4197 -4.2298 39 1 4.2942 6.3457 -4.3980 40 1 2.4766 8.0032 -0.9225 41 1 2.3337 5.7824 0.1091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081716982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:07 Heat of formation + Delta-G solvation = -33.523206 kcal Electronic energy + Delta-G solvation = -26835.612356 eV Core-core repulsion = 22825.208171 eV Total energy + Delta-G solvation = -4010.404184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.89060 -41.83490 -39.15245 -37.77603 -36.59995 -35.26744 -32.88821 -32.29675 -30.28907 -29.34393 -28.94561 -27.22571 -26.23180 -24.40140 -23.04709 -22.55121 -22.16758 -20.89189 -19.61397 -17.85105 -17.59118 -16.99495 -16.56788 -16.26891 -15.95727 -15.68261 -15.60044 -15.25211 -15.08191 -14.71826 -14.38766 -14.18564 -13.94060 -13.66618 -13.48334 -13.25053 -13.01433 -12.64364 -12.37554 -12.19729 -12.09422 -11.89382 -11.45458 -11.31725 -11.11438 -11.04980 -10.91023 -10.55055 -10.21513 -10.07113 -9.73183 -9.69450 -9.36658 -8.45044 -8.27919 -8.01015 -7.77893 -6.06304 -4.11702 0.62086 1.26589 2.17192 2.84319 3.28855 3.35931 3.39238 3.52683 3.57488 3.69878 3.78411 4.19260 4.41401 4.43487 4.60247 4.73856 4.91798 5.00753 5.04379 5.09649 5.13799 5.15363 5.27507 5.29533 5.32201 5.36225 5.53652 5.68486 5.75811 5.85160 5.92881 6.00866 6.07725 6.43140 6.56779 6.84366 7.03152 7.09237 7.26261 7.34157 7.47186 7.89265 8.17218 8.19635 8.70982 8.93705 9.52978 11.01708 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.003625 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.238222 B = 7722.638892 C = 8936.687376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.025 3.975 4 C 0.087 3.913 5 N -0.579 5.579 6 C 0.250 3.750 7 C -0.533 4.533 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.566 3.434 16 O -0.514 6.514 17 C 0.049 3.951 18 C -0.126 4.126 19 C -0.087 4.087 20 C -0.099 4.099 21 C 0.066 3.934 22 F -0.146 7.146 23 C -0.130 4.130 24 C -0.097 4.097 25 C 0.086 3.914 26 N -0.585 5.585 27 H 0.425 0.575 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.264 0.736 38 H 0.158 0.842 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 17.955 3.899 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.053 4.053 4 C -0.038 4.038 5 N -0.309 5.309 6 C 0.132 3.868 7 C -0.571 4.571 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.352 3.648 16 O -0.389 6.389 17 C -0.061 4.061 18 C -0.152 4.152 19 C -0.092 4.092 20 C -0.119 4.119 21 C 0.046 3.954 22 F -0.124 7.124 23 C -0.150 4.150 24 C -0.118 4.118 25 C -0.024 4.024 26 N -0.201 5.201 27 H 0.274 0.726 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.176 0.824 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.464 17.130 3.442 19.871 hybrid contribution 0.587 0.113 0.660 0.890 sum -8.877 17.243 4.101 19.823 Atomic orbital electron populations 1.22771 0.81442 1.03059 0.99422 1.88108 1.19189 1.25714 1.95143 1.23388 0.95226 0.86772 0.99959 1.21964 0.91229 0.99591 0.91011 1.48139 1.63698 1.12187 1.06908 1.19418 0.96036 0.71887 0.99453 1.21438 0.95032 0.92634 1.48041 0.92450 1.24913 0.98050 0.95842 0.95106 1.69937 1.35561 0.98910 1.48555 0.86500 0.84854 0.77859 0.78225 1.20659 1.21042 1.19864 1.17182 0.79356 0.83364 0.84937 1.90837 1.47292 1.71526 1.29257 1.20844 1.02634 0.93588 0.89038 1.20859 1.04912 0.89382 1.00052 1.17917 1.03625 0.93357 0.94328 1.20287 1.00981 0.90026 1.00587 1.16991 1.04939 0.79878 0.93598 1.91478 1.94882 1.40577 1.85512 1.20753 1.02051 0.97711 0.94466 1.19862 1.02500 0.89427 1.00008 1.18477 1.02800 0.85008 0.96090 1.43671 1.53001 1.05281 1.18100 0.72592 0.89315 0.94357 0.94332 0.92386 0.93154 0.87248 0.89690 0.93661 0.93622 0.92666 0.82394 0.84554 0.84499 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.36 -5.67 10.45 -35.23 -0.37 -6.04 16 3 C 0.03 0.32 4.74 37.15 0.18 0.49 16 4 C 0.09 1.32 5.32 -4.04 -0.02 1.30 16 5 N -0.58 -11.93 2.42 -176.47 -0.43 -12.36 16 6 C 0.25 6.44 5.14 -5.19 -0.03 6.41 16 7 C -0.53 -14.83 9.39 -34.43 -0.32 -15.16 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 11 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.57 11.82 7.56 -12.69 -0.10 11.72 16 16 O -0.51 -12.79 16.43 5.24 0.09 -12.70 16 17 C 0.05 0.81 6.38 -82.29 -0.53 0.28 16 18 C -0.13 -1.93 10.55 -39.15 -0.41 -2.34 16 19 C -0.09 -1.17 6.16 -106.93 -0.66 -1.82 16 20 C -0.10 -1.17 10.03 -39.46 -0.40 -1.57 16 21 C 0.07 0.74 7.24 -39.84 -0.29 0.45 16 22 F -0.15 -1.68 17.25 2.25 0.04 -1.64 16 23 C -0.13 -1.23 9.99 -39.46 -0.39 -1.62 16 24 C -0.10 -0.93 10.07 -39.43 -0.40 -1.32 16 25 C 0.09 1.05 7.25 -83.95 -0.61 0.45 16 26 N -0.59 -7.54 4.29 -7.34 -0.03 -7.57 16 27 H 0.42 4.62 3.43 -40.82 -0.14 4.48 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.64 6.63 -51.93 -0.34 0.30 16 33 H 0.11 1.72 8.01 -51.93 -0.42 1.30 16 34 H 0.09 1.08 5.13 -51.93 -0.27 0.81 16 35 H 0.05 1.20 7.87 -51.93 -0.41 0.79 16 36 H 0.05 1.33 7.39 -51.93 -0.38 0.95 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -33.53 350.66 -7.55 -41.08 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.89 Total: 2.40 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.96 Total: 0.42 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.28 Total: -45.40 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.28 Total: -18.74 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.53 -7.55 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081716982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.552 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds