Wall clock time and date at job start Tue Mar 31 2020 13:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99936 * 2 1 4 4 C 1.52993 * 109.47025 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46918 * 65.00257 * 4 3 2 6 6 C 1.46499 * 119.99607 * 262.47535 * 5 4 3 7 7 C 1.50708 * 109.47107 * 270.00173 * 6 5 4 8 8 H 1.07992 * 119.99875 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99808 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00010 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99870 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47377 * 89.99679 * 11 9 7 13 13 H 1.48498 * 109.47415 * 209.99562 * 11 9 7 14 14 H 1.48503 * 109.47321 * 329.99746 * 11 9 7 15 15 C 1.34769 * 120.00227 * 82.47624 * 5 4 3 16 16 O 1.21643 * 120.00135 * 182.34259 * 15 5 4 17 17 C 1.47057 * 120.00246 * 2.35040 * 15 5 4 18 18 C 1.35875 * 125.43479 * 168.60608 * 17 15 5 19 19 C 1.41581 * 107.73944 * 180.02562 * 18 17 15 20 20 C 1.40128 * 133.34163 * 180.29166 * 19 18 17 21 21 C 1.36619 * 119.80862 * 180.17687 * 20 19 18 22 22 F 1.35102 * 119.71872 * 179.77622 * 21 20 19 23 23 C 1.39127 * 120.56058 * 359.49724 * 21 20 19 24 24 C 1.37655 * 120.62762 * 0.25575 * 23 21 20 25 25 C 1.39225 * 119.84499 * 0.02562 * 24 23 21 26 26 N 1.37567 * 133.15446 * 180.02562 * 25 24 23 27 27 H 0.97000 * 125.60962 * 359.97188 * 26 25 24 28 28 H 1.09006 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47723 * 300.00497 * 1 2 3 30 30 H 1.09003 * 109.46845 * 60.00305 * 1 2 3 31 31 H 1.09005 * 109.47080 * 59.99420 * 3 2 1 32 32 H 1.09004 * 109.46818 * 299.99981 * 3 2 1 33 33 H 1.08993 * 109.47723 * 305.00023 * 4 3 2 34 34 H 1.09001 * 109.47083 * 184.99752 * 4 3 2 35 35 H 1.08997 * 109.47200 * 30.00125 * 6 5 4 36 36 H 1.09005 * 109.47072 * 150.00269 * 6 5 4 37 37 H 0.97002 * 120.00047 * 180.02562 * 10 9 7 38 38 H 1.07994 * 126.12556 * 359.97438 * 18 17 15 39 39 H 1.07999 * 120.10200 * 359.95155 * 20 19 18 40 40 H 1.08002 * 119.68169 * 180.27599 * 23 21 20 41 41 H 1.08006 * 120.08205 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.2649 -0.8716 -1.2947 7 6 5.7165 -1.1029 -0.9623 8 1 6.3598 -0.2643 -0.7402 9 6 6.2233 -2.3850 -0.9417 10 7 5.4398 -3.4062 -1.2116 11 14 8.0227 -2.6716 -0.5303 12 1 8.1723 -2.8550 0.9357 13 1 8.5035 -3.8883 -1.2329 14 1 8.8230 -1.4992 -0.9666 15 6 4.1172 1.3138 -2.3620 16 8 4.4423 0.7912 -3.4113 17 6 3.8779 2.7636 -2.3059 18 6 4.1930 3.6525 -3.2840 19 6 3.8017 4.9388 -2.8404 20 6 3.8695 6.2157 -3.4136 21 6 3.4010 7.2965 -2.7215 22 9 3.4714 8.5274 -3.2740 23 6 2.8467 7.1396 -1.4551 24 6 2.7652 5.8941 -0.8747 25 6 3.2414 4.7786 -1.5583 26 7 3.2974 3.4391 -1.2499 27 1 2.9811 3.0354 -0.4266 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0902 35 1 3.6388 -1.3902 -0.5687 36 1 4.0556 -1.2540 -2.2938 37 1 5.7962 -4.3082 -1.1967 38 1 4.6593 3.4197 -4.2298 39 1 4.2942 6.3457 -4.3980 40 1 2.4766 8.0032 -0.9225 41 1 2.3337 5.7824 0.1091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081716982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:06 Heat of formation + Delta-G solvation = -55.000580 kcal Electronic energy + Delta-G solvation = -26836.543685 eV Core-core repulsion = 22825.208171 eV Total energy + Delta-G solvation = -4011.335513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.76582 -42.93299 -40.56922 -38.98096 -37.61257 -36.81799 -34.88072 -33.39379 -31.66121 -30.53844 -29.94231 -28.92669 -27.24911 -25.92614 -24.44137 -23.82033 -23.15258 -22.07409 -20.90063 -18.94026 -18.82602 -18.63249 -18.01032 -17.35343 -17.15813 -16.96622 -16.67930 -16.52492 -16.25606 -16.17237 -15.71727 -15.34165 -15.08753 -14.86914 -14.72976 -14.26367 -14.19391 -14.08110 -13.68695 -13.58275 -13.36027 -13.18012 -12.98010 -12.84196 -12.57698 -12.34917 -12.22671 -12.04961 -11.94117 -11.74344 -11.09979 -11.04222 -10.69964 -10.63264 -9.68789 -9.22189 -8.89050 -8.22605 -6.37957 -0.37981 0.37495 1.00538 1.36864 1.40108 1.50329 1.73992 2.07089 2.28516 2.40057 2.66640 2.72439 3.07011 3.23742 3.43471 3.58531 3.82705 3.93893 3.97146 4.02562 4.10484 4.19433 4.29736 4.33309 4.44743 4.51611 4.60297 4.67161 4.82193 4.83701 4.96922 5.03168 5.18774 5.20653 5.22693 5.40252 5.48540 5.53031 5.76027 5.94733 6.03136 6.14793 6.29129 6.54062 6.70406 7.10800 7.33530 8.84851 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.003625 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.238222 B = 7722.638892 C = 8936.687376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.028 3.972 4 C 0.080 3.920 5 N -0.584 5.584 6 C 0.272 3.728 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.969 3.031 12 H -0.262 1.262 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.561 3.439 16 O -0.574 6.574 17 C 0.024 3.976 18 C -0.122 4.122 19 C -0.110 4.110 20 C -0.107 4.107 21 C 0.061 3.939 22 F -0.148 7.148 23 C -0.114 4.114 24 C -0.089 4.089 25 C 0.092 3.908 26 N -0.571 5.571 27 H 0.433 0.567 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.031 0.969 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.171 0.829 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 21.238 6.479 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.050 4.050 4 C -0.043 4.043 5 N -0.314 5.314 6 C 0.152 3.848 7 C -0.587 4.587 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.793 3.207 12 H -0.187 1.187 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.350 3.650 16 O -0.454 6.454 17 C -0.086 4.086 18 C -0.149 4.149 19 C -0.115 4.115 20 C -0.127 4.127 21 C 0.041 3.959 22 F -0.127 7.127 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.019 4.019 26 N -0.187 5.187 27 H 0.285 0.715 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.049 0.951 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.189 0.811 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.111 20.451 6.080 23.611 hybrid contribution 0.694 -0.734 -0.169 1.024 sum -9.417 19.718 5.911 22.637 Atomic orbital electron populations 1.22937 0.79468 1.03589 1.01085 1.88050 1.21555 1.27603 1.95529 1.23439 0.92859 0.86293 1.02361 1.22322 0.93643 1.00351 0.87974 1.48035 1.63752 1.10434 1.09129 1.18756 0.95046 0.75121 0.95923 1.21716 0.95968 0.92874 1.48140 0.92718 1.25847 1.02826 0.95516 0.94740 1.70064 1.37712 0.99416 1.49299 0.85401 0.78880 0.77587 0.78845 1.18739 1.20626 1.19772 1.17733 0.78104 0.85208 0.83976 1.90781 1.50099 1.73213 1.31261 1.19987 1.06230 0.91041 0.91333 1.20966 1.03898 0.90556 0.99487 1.17928 1.05130 0.92945 0.95464 1.20392 1.01289 0.89769 1.01226 1.17214 1.04888 0.79471 0.94356 1.91479 1.94884 1.40609 1.85714 1.21182 0.99950 0.98883 0.93403 1.20294 1.01308 0.87965 1.01302 1.18799 1.02223 0.85053 0.95786 1.43380 1.52555 1.05376 1.17411 0.71524 0.89580 0.91249 0.93935 0.87135 0.93156 0.87998 0.86798 0.95068 0.98535 0.92361 0.83179 0.83895 0.81114 0.81028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -12.64 10.45 -148.98 -1.56 -14.20 16 3 C 0.03 0.66 4.74 71.98 0.34 1.00 16 4 C 0.08 2.40 5.32 86.38 0.46 2.86 16 5 N -0.58 -25.25 2.42 -830.46 -2.01 -27.27 16 6 C 0.27 14.95 5.14 85.64 0.44 15.39 16 7 C -0.55 -31.83 9.39 25.60 0.24 -31.59 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.01 0.58 5.46 84.66 0.46 1.05 16 10 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 11 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 15 C 0.56 24.82 7.56 86.56 0.65 25.47 16 16 O -0.57 -30.97 16.43 -4.17 -0.07 -31.03 16 17 C 0.02 0.81 6.38 39.92 0.25 1.06 16 18 C -0.12 -3.81 10.55 22.55 0.24 -3.57 16 19 C -0.11 -2.80 6.16 -21.36 -0.13 -2.93 16 20 C -0.11 -2.34 10.03 22.35 0.22 -2.12 16 21 C 0.06 1.16 7.24 22.10 0.16 1.32 16 22 F -0.15 -2.99 17.25 44.97 0.78 -2.22 16 23 C -0.11 -1.58 9.99 22.35 0.22 -1.36 16 24 C -0.09 -1.22 10.07 22.37 0.23 -1.00 16 25 C 0.09 1.96 7.25 39.11 0.28 2.24 16 26 N -0.57 -13.55 4.29 -177.14 -0.76 -14.31 16 27 H 0.43 8.16 3.43 -92.71 -0.32 7.84 16 28 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.05 1.20 6.63 -2.38 -0.02 1.18 16 33 H 0.10 3.19 8.01 -2.39 -0.02 3.17 16 34 H 0.11 2.69 5.13 -2.39 -0.01 2.67 16 35 H 0.03 1.77 7.87 -2.39 -0.02 1.76 16 36 H 0.00 -0.22 7.39 -2.38 -0.02 -0.24 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.15 4.74 8.06 -2.91 -0.02 4.71 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 40 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 Total: -1.00 -79.02 350.66 4.77 -74.25 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.75 Total: 14.21 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.32 Total: 9.63 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -2.49 Total: -97.70 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.62 Total: -45.24 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -79.02 4.77 -74.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081716982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.249 kcal (2) G-P(sol) polarization free energy of solvation -79.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds