Wall clock time and date at job start Tue Mar 31 2020 12:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47529 * 2 1 4 4 N 1.46503 * 109.47042 * 119.99880 * 2 1 3 5 5 C 1.39990 * 120.00050 * 275.00029 * 4 2 1 6 6 C 1.40428 * 125.97585 * 359.97438 * 5 4 2 7 7 C 1.35250 * 107.86268 * 180.02562 * 6 5 4 8 8 N 1.34955 * 107.86330 * 0.02562 * 7 6 5 9 9 C 1.46495 * 125.97452 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47571 * 125.00257 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 N 1.31221 * 125.97652 * 180.37589 * 5 4 2 19 19 C 1.50702 * 109.47435 * 239.99898 * 2 1 3 20 20 O 1.21284 * 120.00113 * 240.00212 * 19 2 1 21 21 N 1.34773 * 119.99871 * 59.99495 * 19 2 1 22 22 C 1.46502 * 119.99959 * 180.02562 * 21 19 2 23 23 C 1.53000 * 109.46887 * 180.02562 * 22 21 19 24 24 F 1.39904 * 109.47113 * 60.00821 * 23 22 21 25 25 F 1.39904 * 109.46913 * 179.97438 * 23 22 21 26 26 F 1.39895 * 109.47434 * 300.00333 * 23 22 21 27 27 H 1.08996 * 109.47284 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47164 * 300.00260 * 1 2 3 29 29 H 1.09001 * 109.47012 * 60.00201 * 1 2 3 30 30 H 0.96997 * 120.00236 * 95.00087 * 4 2 1 31 31 H 1.08006 * 126.06874 * 0.07867 * 6 5 4 32 32 H 1.07997 * 126.06549 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47378 * 4.99917 * 9 8 7 34 34 H 1.09001 * 109.47153 * 245.00037 * 9 8 7 35 35 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 36 36 H 0.96996 * 120.00125 * 0.02562 * 21 19 2 37 37 H 1.08999 * 109.47357 * 300.00859 * 22 21 19 38 38 H 1.09003 * 109.46805 * 60.00994 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1520 0.0078 2.4021 6 6 1.8565 1.3653 2.6063 7 6 2.1183 1.6567 3.9008 8 7 2.5630 0.5306 4.4969 9 6 2.9623 0.3998 5.9003 10 6 2.1770 -0.7135 6.5445 11 1 1.4525 -1.2679 5.9663 12 6 2.3825 -1.0235 7.8720 13 7 1.6933 -1.9915 8.4356 14 14 3.6350 -0.0641 8.8722 15 1 4.9596 -0.7284 8.7750 16 1 3.7353 1.3199 8.3435 17 1 3.2058 -0.0213 10.2931 18 7 2.5823 -0.4898 3.5375 19 6 2.0324 -0.7104 -1.2304 20 8 2.7297 -1.6965 -1.1191 21 7 1.7067 -0.2500 -2.4545 22 6 2.1947 -0.9410 -3.6507 23 6 1.6852 -0.2193 -4.8999 24 9 2.1526 1.0993 -4.8999 25 9 2.1516 -0.8788 -6.0422 26 9 0.2862 -0.2183 -4.9000 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.2490 -1.6317 1.1527 31 1 1.4852 2.0543 1.8619 32 1 1.9942 2.6199 4.3734 33 1 2.7629 1.3350 6.4235 34 1 4.0269 0.1725 5.9555 35 1 1.8350 -2.2070 9.3706 36 1 1.1493 0.5387 -2.5436 37 1 3.2847 -0.9415 -3.6508 38 1 1.8308 -1.9685 -3.6505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086154699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:01 Heat of formation + Delta-G solvation = -100.800941 kcal Electronic energy + Delta-G solvation = -26045.890272 eV Core-core repulsion = 21510.631928 eV Total energy + Delta-G solvation = -4535.258345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.71689 -48.22601 -48.19443 -40.57992 -40.08060 -36.09612 -35.47919 -33.44204 -31.92212 -30.50262 -29.57602 -28.71008 -26.90329 -24.84273 -23.48752 -22.50497 -21.22886 -20.28048 -19.55396 -19.18788 -18.98006 -18.57679 -17.25432 -16.89246 -16.47837 -16.28001 -15.89048 -15.21054 -15.11177 -14.90875 -14.67500 -14.61500 -14.50684 -14.33965 -14.33126 -14.06853 -13.79793 -13.54514 -13.10609 -12.92855 -12.55653 -12.53142 -12.47328 -12.30885 -11.92436 -11.81686 -11.01800 -10.82748 -10.35052 -10.23497 -9.88929 -9.82328 -9.69658 -9.36735 -8.72725 -8.01857 -7.12822 -6.19492 -4.21173 1.89117 2.14651 2.30641 2.79830 3.09011 3.11649 3.19132 3.23317 3.27918 3.41063 3.62008 3.67049 4.06844 4.20659 4.26045 4.55280 4.73744 4.84867 4.96074 5.08480 5.30517 5.42280 5.53020 5.59359 5.81728 6.02072 6.14686 6.36042 6.43292 6.62366 6.72580 6.93964 7.33898 7.55443 7.64928 7.88193 8.11938 8.39465 8.77556 8.92281 9.35813 10.93348 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.037422 B = 0.002092 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.043772 B =13378.773427 C =13509.278531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.160 3.840 3 H 0.106 0.894 4 N -0.711 5.711 5 C 0.311 3.689 6 C -0.332 4.332 7 C 0.068 3.932 8 N -0.326 5.326 9 C 0.233 3.767 10 C -0.531 4.531 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.889 5.889 14 Si 0.875 3.125 15 H -0.272 1.272 16 H -0.265 1.265 17 H -0.281 1.281 18 N -0.320 5.320 19 C 0.521 3.479 20 O -0.518 6.518 21 N -0.731 5.731 22 C 0.078 3.922 23 C 0.449 3.551 24 F -0.178 7.178 25 F -0.173 7.173 26 F -0.177 7.177 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.409 0.591 31 H 0.133 0.867 32 H 0.164 0.836 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.267 0.733 36 H 0.410 0.590 37 H 0.116 0.884 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 8.657 -26.703 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.049 3.951 3 H 0.124 0.876 4 N -0.356 5.356 5 C 0.054 3.946 6 C -0.365 4.365 7 C -0.083 4.083 8 N -0.105 5.105 9 C 0.114 3.886 10 C -0.569 4.569 11 H 0.104 0.896 12 C -0.129 4.129 13 N -0.526 5.526 14 Si 0.701 3.299 15 H -0.197 1.197 16 H -0.190 1.190 17 H -0.207 1.207 18 N -0.152 5.152 19 C 0.307 3.693 20 O -0.391 6.391 21 N -0.387 5.387 22 C -0.048 4.048 23 C 0.394 3.606 24 F -0.159 7.159 25 F -0.155 7.155 26 F -0.159 7.159 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.247 0.753 31 H 0.150 0.850 32 H 0.182 0.818 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.246 0.754 37 H 0.134 0.866 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.856 6.931 -25.735 26.666 hybrid contribution 0.002 1.310 -0.121 1.316 sum -0.854 8.241 -25.857 27.152 Atomic orbital electron populations 1.22328 0.93560 1.03522 1.03246 1.20370 0.94948 0.97027 0.82762 0.87603 1.42994 1.76553 1.12230 1.03774 1.19072 0.97969 0.90598 0.86947 1.20736 1.23046 0.95406 0.97312 1.22333 0.99551 0.93034 0.93391 1.48578 1.47638 1.04716 1.09526 1.19986 0.96676 0.99435 0.72515 1.21119 1.23362 1.16467 0.95986 0.89633 1.24844 0.95832 0.94920 0.97280 1.69877 1.40578 1.29273 1.12899 0.86889 0.82161 0.80757 0.80110 1.19743 1.19020 1.20665 1.77552 1.29397 1.12242 0.95972 1.20957 0.79576 0.84653 0.84136 1.90762 1.36509 1.25675 1.86189 1.45640 1.55526 1.33047 1.04514 1.22456 1.03162 0.98041 0.81106 1.20542 0.75934 0.77938 0.86175 1.93240 1.88311 1.37608 1.96749 1.93237 1.88423 1.80662 1.53130 1.93238 1.29534 1.96364 1.96747 0.91604 0.90090 0.91755 0.75338 0.84961 0.81844 0.93173 0.94661 0.92245 0.75425 0.86595 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.40 37.16 0.35 -1.09 16 2 C 0.16 1.66 2.98 -69.08 -0.21 1.45 16 3 H 0.11 0.94 7.14 -51.93 -0.37 0.57 16 4 N -0.71 -10.91 5.16 -54.70 -0.28 -11.19 16 5 C 0.31 5.84 8.14 -154.55 -1.26 4.58 16 6 C -0.33 -5.44 9.92 -39.82 -0.40 -5.83 16 7 C 0.07 1.22 11.44 -17.24 -0.20 1.02 16 8 N -0.33 -7.28 3.66 -62.56 -0.23 -7.50 16 9 C 0.23 5.55 5.33 -5.20 -0.03 5.52 16 10 C -0.53 -15.14 9.79 -34.44 -0.34 -15.48 16 11 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -26.91 13.96 55.43 0.77 -26.13 16 14 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 N -0.32 -7.44 12.43 31.41 0.39 -7.05 16 19 C 0.52 5.24 7.22 -10.99 -0.08 5.16 16 20 O -0.52 -7.22 15.84 5.55 0.09 -7.13 16 21 N -0.73 -4.66 5.31 -60.29 -0.32 -4.98 16 22 C 0.08 0.43 5.64 -4.04 -0.02 0.41 16 23 C 0.45 2.48 3.11 37.16 0.12 2.60 16 24 F -0.18 -1.11 17.18 2.25 0.04 -1.08 16 25 F -0.17 -1.11 17.32 2.25 0.04 -1.07 16 26 F -0.18 -1.10 17.18 2.25 0.04 -1.06 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 30 H 0.41 6.77 7.92 -40.82 -0.32 6.45 16 31 H 0.13 1.67 7.45 -52.48 -0.39 1.27 16 32 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.05 1.09 7.12 -51.93 -0.37 0.72 16 34 H 0.04 0.84 7.57 -51.93 -0.39 0.44 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.41 1.70 7.78 -40.82 -0.32 1.38 16 37 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -34.82 344.22 -5.36 -40.19 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.26 Total: 5.80 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.16 Total: 0.36 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.33 Total: -56.86 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.09 Total: -7.13 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.12 Total: -3.21 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.82 -5.36 -40.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.613 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds