Wall clock time and date at job start Tue Mar 31 2020 12:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47529 * 2 1 4 4 N 1.46503 * 109.47042 * 119.99880 * 2 1 3 5 5 C 1.39990 * 120.00050 * 275.00029 * 4 2 1 6 6 C 1.40428 * 125.97585 * 359.97438 * 5 4 2 7 7 C 1.35250 * 107.86268 * 180.02562 * 6 5 4 8 8 N 1.34955 * 107.86330 * 0.02562 * 7 6 5 9 9 C 1.46495 * 125.97452 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47571 * 125.00257 * 9 8 7 11 11 H 1.08002 * 119.99446 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 179.72119 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 N 1.31221 * 125.97652 * 180.37589 * 5 4 2 19 19 C 1.50702 * 109.47435 * 239.99898 * 2 1 3 20 20 O 1.21284 * 120.00113 * 240.00212 * 19 2 1 21 21 N 1.34773 * 119.99871 * 59.99495 * 19 2 1 22 22 C 1.46502 * 119.99959 * 180.02562 * 21 19 2 23 23 C 1.53000 * 109.46887 * 180.02562 * 22 21 19 24 24 F 1.39904 * 109.47113 * 60.00821 * 23 22 21 25 25 F 1.39904 * 109.46913 * 179.97438 * 23 22 21 26 26 F 1.39895 * 109.47434 * 300.00333 * 23 22 21 27 27 H 1.08996 * 109.47284 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47164 * 300.00260 * 1 2 3 29 29 H 1.09001 * 109.47012 * 60.00201 * 1 2 3 30 30 H 0.96997 * 120.00236 * 95.00087 * 4 2 1 31 31 H 1.08006 * 126.06874 * 0.07867 * 6 5 4 32 32 H 1.07997 * 126.06549 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47378 * 4.99917 * 9 8 7 34 34 H 1.09001 * 109.47153 * 245.00037 * 9 8 7 35 35 H 0.96999 * 120.00128 * 180.27192 * 13 12 10 36 36 H 0.96996 * 120.00125 * 0.02562 * 21 19 2 37 37 H 1.08999 * 109.47357 * 300.00859 * 22 21 19 38 38 H 1.09003 * 109.46805 * 60.00994 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1520 0.0078 2.4021 6 6 1.8565 1.3653 2.6063 7 6 2.1183 1.6567 3.9008 8 7 2.5630 0.5306 4.4969 9 6 2.9623 0.3998 5.9003 10 6 2.1770 -0.7135 6.5445 11 1 1.4525 -1.2679 5.9663 12 6 2.3825 -1.0235 7.8720 13 7 1.6933 -1.9915 8.4356 14 14 3.6350 -0.0641 8.8722 15 1 4.9596 -0.7284 8.7750 16 1 3.7353 1.3199 8.3435 17 1 3.2058 -0.0213 10.2931 18 7 2.5823 -0.4898 3.5375 19 6 2.0324 -0.7104 -1.2304 20 8 2.7297 -1.6965 -1.1191 21 7 1.7067 -0.2500 -2.4545 22 6 2.1947 -0.9410 -3.6507 23 6 1.6852 -0.2193 -4.8999 24 9 2.1526 1.0993 -4.8999 25 9 2.1516 -0.8788 -6.0422 26 9 0.2862 -0.2183 -4.9000 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.2490 -1.6317 1.1527 31 1 1.4852 2.0543 1.8619 32 1 1.9942 2.6199 4.3734 33 1 2.7629 1.3350 6.4235 34 1 4.0269 0.1725 5.9555 35 1 1.8350 -2.2070 9.3706 36 1 1.1493 0.5387 -2.5436 37 1 3.2847 -0.9415 -3.6508 38 1 1.8308 -1.9685 -3.6505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:01 Heat of formation + Delta-G solvation = -127.143926 kcal Electronic energy + Delta-G solvation = -26047.032590 eV Core-core repulsion = 21510.631928 eV Total energy + Delta-G solvation = -4536.400662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.19963 -48.71647 -48.67426 -41.84007 -41.08164 -37.14233 -36.26332 -35.33781 -33.47494 -31.77454 -30.66955 -29.73726 -28.58819 -25.62639 -24.43988 -23.93817 -22.21374 -21.56630 -20.83500 -19.66343 -19.49941 -19.29088 -19.03765 -18.23440 -17.53588 -17.21459 -16.69997 -16.40662 -16.12456 -15.83318 -15.58864 -15.41283 -15.23272 -15.10179 -14.95779 -14.82417 -14.81040 -14.65680 -14.50050 -14.30739 -13.92398 -13.65080 -13.51678 -13.19944 -13.00258 -12.87030 -12.62448 -12.56455 -12.00653 -11.78827 -11.20399 -11.12145 -10.98730 -10.84116 -10.52691 -9.47392 -8.51400 -8.35485 -6.45124 1.26910 1.34334 1.35926 1.38166 1.41096 1.48788 1.66148 1.93714 2.29215 2.30652 2.62913 2.77717 2.95177 2.97019 3.13112 3.50937 4.00426 4.08013 4.10407 4.19665 4.29112 4.34637 4.65495 4.71906 4.83756 4.91245 4.93488 4.96512 5.07481 5.28039 5.33252 5.60342 6.03236 6.09748 6.37368 6.53811 6.64284 6.72875 6.91302 7.17742 7.36868 8.81793 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.037422 B = 0.002092 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.043772 B =13378.773427 C =13509.278531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 H 0.131 0.869 4 N -0.714 5.714 5 C 0.312 3.688 6 C -0.319 4.319 7 C 0.068 3.932 8 N -0.358 5.358 9 C 0.242 3.758 10 C -0.543 4.543 11 H 0.022 0.978 12 C 0.010 3.990 13 N -0.945 5.945 14 Si 0.958 3.042 15 H -0.269 1.269 16 H -0.227 1.227 17 H -0.277 1.277 18 N -0.397 5.397 19 C 0.526 3.474 20 O -0.563 6.563 21 N -0.712 5.712 22 C 0.078 3.922 23 C 0.459 3.541 24 F -0.180 7.180 25 F -0.177 7.177 26 F -0.179 7.179 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.398 0.602 31 H 0.178 0.822 32 H 0.207 0.793 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.271 0.729 36 H 0.423 0.577 37 H 0.121 0.879 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 12.142 -28.077 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.148 0.852 4 N -0.357 5.357 5 C 0.055 3.945 6 C -0.351 4.351 7 C -0.081 4.081 8 N -0.138 5.138 9 C 0.121 3.879 10 C -0.581 4.581 11 H 0.041 0.959 12 C -0.189 4.189 13 N -0.585 5.585 14 Si 0.779 3.221 15 H -0.194 1.194 16 H -0.150 1.150 17 H -0.203 1.203 18 N -0.229 5.229 19 C 0.313 3.687 20 O -0.440 6.440 21 N -0.368 5.368 22 C -0.048 4.048 23 C 0.404 3.596 24 F -0.161 7.161 25 F -0.159 7.159 26 F -0.161 7.161 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.234 0.766 31 H 0.195 0.805 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.262 0.738 37 H 0.139 0.861 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.507 10.486 -27.212 29.166 hybrid contribution -0.242 0.166 0.079 0.304 sum -0.749 10.652 -27.133 29.158 Atomic orbital electron populations 1.22288 0.91873 1.03106 1.04733 1.20719 0.96054 0.97603 0.81031 0.85167 1.43325 1.76099 1.11970 1.04280 1.19501 0.96306 0.91894 0.86841 1.21213 1.21495 0.94637 0.97799 1.23174 0.97720 0.93320 0.93883 1.48372 1.50420 1.06035 1.08992 1.19743 0.95623 0.98591 0.73897 1.21271 1.22902 1.17730 0.96173 0.95921 1.25982 0.98294 0.96018 0.98574 1.70066 1.43081 1.31715 1.13595 0.85583 0.78117 0.80678 0.77739 1.19443 1.14963 1.20255 1.77418 1.32920 1.14622 0.97983 1.20830 0.79001 0.83968 0.84937 1.90757 1.38749 1.27668 1.86813 1.45414 1.54667 1.33041 1.03716 1.22528 1.03536 0.98213 0.80509 1.20390 0.75678 0.77647 0.85850 1.93240 1.88335 1.37796 1.96743 1.93232 1.88486 1.80777 1.53373 1.93238 1.29737 1.96357 1.96740 0.93049 0.91110 0.87648 0.76649 0.80499 0.77650 0.90024 0.94730 0.91990 0.73771 0.86114 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.40 71.98 0.68 -1.70 16 2 C 0.15 2.90 2.98 44.24 0.13 3.04 16 3 H 0.13 1.82 7.14 -2.39 -0.02 1.80 16 4 N -0.71 -21.87 5.16 -326.97 -1.69 -23.56 16 5 C 0.31 11.67 8.14 133.39 1.09 12.75 16 6 C -0.32 -9.60 9.92 22.11 0.22 -9.38 16 7 C 0.07 2.24 11.44 83.52 0.96 3.20 16 8 N -0.36 -15.98 3.66 -351.85 -1.29 -17.27 16 9 C 0.24 11.43 5.33 85.63 0.46 11.89 16 10 C -0.54 -32.20 9.79 25.60 0.25 -31.95 16 11 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 12 C 0.01 0.55 5.47 84.65 0.46 1.01 16 13 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 14 Si 0.96 41.68 27.47 68.60 1.88 43.56 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 18 N -0.40 -19.07 12.43 -54.55 -0.68 -19.74 16 19 C 0.53 9.80 7.22 87.66 0.63 10.43 16 20 O -0.56 -15.63 15.84 -3.04 -0.05 -15.68 16 21 N -0.71 -7.36 5.31 -463.05 -2.46 -9.81 16 22 C 0.08 0.71 5.64 86.38 0.49 1.20 16 23 C 0.46 4.13 3.11 71.98 0.22 4.36 16 24 F -0.18 -1.83 17.18 44.97 0.77 -1.06 16 25 F -0.18 -1.99 17.32 44.97 0.78 -1.21 16 26 F -0.18 -1.82 17.18 44.97 0.77 -1.05 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 0.68 7.56 -2.39 -0.02 0.66 16 30 H 0.40 13.79 7.92 -92.71 -0.73 13.05 16 31 H 0.18 3.56 7.45 -2.91 -0.02 3.54 16 32 H 0.21 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.08 3.31 7.12 -2.39 -0.02 3.29 16 34 H 0.03 1.62 7.57 -2.39 -0.02 1.60 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.42 2.03 7.78 -92.71 -0.72 1.31 16 37 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -82.84 344.22 3.55 -79.28 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.38 Total: 21.08 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.58 Total: 4.85 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -5.81 Total: -129.77 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.05 Total: -15.68 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 2.32 Total: -3.32 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Total: -82.84 3.55 -79.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.859 kcal (2) G-P(sol) polarization free energy of solvation -82.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds