Wall clock time and date at job start Tue Mar 31 2020 12:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46655 * 2 1 4 4 C 1.50702 * 109.46757 * 119.99375 * 2 1 3 5 5 H 1.08007 * 119.99439 * 120.00664 * 4 2 1 6 6 C 1.37870 * 120.00438 * 299.99945 * 4 2 1 7 7 N 1.31520 * 119.99859 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00093 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47172 * 60.00404 * 8 6 4 10 10 H 1.48504 * 109.47009 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46971 * 299.99844 * 8 6 4 12 12 N 1.46498 * 109.47050 * 239.99777 * 2 1 3 13 13 C 1.46499 * 119.99929 * 299.99553 * 12 2 1 14 14 C 1.34777 * 119.99724 * 120.00053 * 12 2 1 15 15 O 1.21278 * 120.00361 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99589 * 179.97438 * 14 12 2 17 17 H 1.09005 * 109.45808 * 60.02925 * 16 14 12 18 18 C 1.52902 * 109.46658 * 300.06256 * 16 14 12 19 19 C 1.50498 * 109.90795 * 288.55509 * 18 16 14 20 20 O 1.21286 * 119.61182 * 144.81725 * 19 18 16 21 21 N 1.34559 * 120.76702 * 324.80280 * 19 18 16 22 22 C 1.39824 * 120.45788 * 0.82608 * 21 19 18 23 23 C 1.38825 * 120.16476 * 198.21870 * 22 21 19 24 24 C 1.38319 * 119.87345 * 179.79855 * 23 22 21 25 25 F 1.35106 * 119.98262 * 180.19205 * 24 23 22 26 26 C 1.38532 * 120.03642 * 0.46935 * 24 23 22 27 27 C 1.38237 * 120.12358 * 359.74572 * 26 24 23 28 28 C 1.38111 * 120.05997 * 0.04096 * 27 26 24 29 29 H 1.08996 * 109.46999 * 60.00348 * 1 2 3 30 30 H 1.09002 * 109.46655 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47423 * 300.00451 * 1 2 3 32 32 H 0.97000 * 120.00270 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47224 * 270.00467 * 13 12 2 34 34 H 1.08994 * 109.47051 * 30.00561 * 13 12 2 35 35 H 1.09004 * 109.46794 * 150.00452 * 13 12 2 36 36 H 1.08995 * 109.39592 * 48.69146 * 18 16 14 37 37 H 1.08999 * 109.39390 * 168.42451 * 18 16 14 38 38 H 0.97004 * 119.76885 * 180.85445 * 21 19 18 39 39 H 1.07996 * 120.06096 * 0.26039 * 23 22 21 40 40 H 1.08001 * 119.93573 * 179.77297 * 26 24 23 41 41 H 1.07993 * 119.96875 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8299 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.8074 -1.1187 4.0079 10 1 1.8268 -0.4196 5.2205 11 1 1.8279 -2.5195 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4278 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1253 -1.8912 16 6 3.2960 -0.7463 -3.3134 17 1 2.4482 -1.0887 -3.9069 18 6 4.1444 -1.9481 -2.8966 19 6 5.4535 -1.4770 -2.3228 20 8 5.9631 -2.0910 -1.4094 21 7 6.0652 -0.3827 -2.8116 22 6 5.4850 0.3480 -3.8530 23 6 6.2560 1.2248 -4.6040 24 6 5.6768 1.9416 -5.6355 25 9 6.4260 2.7926 -6.3703 26 6 4.3276 1.7916 -5.9119 27 6 3.5582 0.9221 -5.1617 28 6 4.1329 0.2009 -4.1335 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.7081 1.1612 3.4843 33 1 2.4159 -2.7377 -0.9714 34 1 0.6906 -2.3002 -0.9845 35 1 1.6239 -2.2853 -2.5000 36 1 3.6074 -2.5272 -2.1455 37 1 4.3356 -2.5756 -3.7672 38 1 6.9148 -0.0990 -2.4392 39 1 7.3077 1.3415 -4.3881 40 1 3.8762 2.3548 -6.7153 41 1 2.5068 0.8068 -5.3796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:58 Heat of formation + Delta-G solvation = -103.338147 kcal Electronic energy + Delta-G solvation = -27681.059493 eV Core-core repulsion = 23667.627906 eV Total energy + Delta-G solvation = -4013.431587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -49.92627 -42.48746 -40.40222 -39.64980 -37.13288 -36.24315 -35.51037 -34.41573 -31.56733 -30.84576 -30.24261 -27.78914 -27.31108 -26.35957 -24.25649 -24.01556 -23.00892 -20.96042 -19.83034 -19.37989 -18.62413 -18.49054 -17.80738 -17.47545 -17.04582 -16.72400 -16.69189 -16.59505 -16.48263 -15.90815 -15.70599 -15.10621 -14.82038 -14.66194 -14.50388 -14.26587 -13.97721 -13.83908 -13.45002 -13.38822 -13.12775 -12.95057 -12.86604 -12.69865 -12.62514 -12.35258 -12.25792 -12.14319 -12.09028 -11.70395 -11.27460 -11.16534 -10.66138 -10.47413 -9.81174 -9.31439 -9.15008 -8.16439 -6.32036 -0.02544 0.13755 1.37207 1.38574 1.39988 1.46799 1.75030 1.89372 2.25018 2.41643 2.70319 3.09849 3.11336 3.37332 3.42653 3.59131 3.73975 3.80666 4.05381 4.15221 4.30178 4.39894 4.50513 4.58362 4.70435 4.74699 4.81028 4.84053 4.92408 4.93739 5.06848 5.12921 5.13998 5.28336 5.47236 5.57396 5.64239 5.66766 5.76927 6.01354 6.05099 6.16891 6.75971 6.81913 6.84058 7.31367 7.47657 8.86978 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.003991 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.320867 B = 7014.581034 C = 7401.265576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.264 3.736 3 H 0.006 0.994 4 C -0.537 4.537 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.286 1.286 10 H -0.280 1.280 11 H -0.260 1.260 12 N -0.597 5.597 13 C 0.071 3.929 14 C 0.493 3.507 15 O -0.591 6.591 16 C -0.052 4.052 17 H 0.170 0.830 18 C -0.143 4.143 19 C 0.514 3.486 20 O -0.566 6.566 21 N -0.660 5.660 22 C 0.187 3.813 23 C -0.195 4.195 24 C 0.119 3.881 25 F -0.140 7.140 26 C -0.170 4.170 27 C -0.039 4.039 28 C -0.119 4.119 29 H 0.026 0.974 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.264 0.736 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.162 0.838 38 H 0.413 0.587 39 H 0.152 0.848 40 H 0.164 0.836 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -5.423 -20.685 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.212 1.212 10 H -0.205 1.205 11 H -0.185 1.185 12 N -0.327 5.327 13 C -0.071 4.071 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.073 4.073 17 H 0.187 0.813 18 C -0.182 4.182 19 C 0.304 3.696 20 O -0.444 6.444 21 N -0.303 5.303 22 C 0.091 3.909 23 C -0.217 4.217 24 C 0.099 3.901 25 F -0.119 7.119 26 C -0.189 4.189 27 C -0.057 4.057 28 C -0.122 4.122 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.144 0.856 37 H 0.180 0.820 38 H 0.251 0.749 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.792 -5.154 -19.962 20.962 hybrid contribution 1.134 0.475 1.633 2.044 sum 4.926 -4.679 -18.328 19.547 Atomic orbital electron populations 1.21855 0.96698 1.00308 1.00106 1.18480 0.91853 0.91933 0.81584 0.97608 1.21537 1.31643 1.12914 0.91488 0.92866 1.25627 0.95129 0.95629 1.01713 1.69999 1.37245 1.23714 1.24379 0.85658 0.78057 0.79389 0.78818 1.21186 1.20544 1.18482 1.48186 1.48938 1.13380 1.22189 1.22098 1.01568 0.80309 1.03110 1.21197 0.78493 0.86863 0.85307 1.90655 1.59324 1.19495 1.77787 1.20278 1.00033 0.93551 0.93388 0.81265 1.22195 0.90913 0.98578 1.06489 1.21353 0.87623 0.79162 0.81431 1.90769 1.67573 1.56467 1.29562 1.43595 1.25197 1.26712 1.34810 1.17402 0.92050 0.93069 0.88387 1.20702 1.01671 1.01193 0.98098 1.17479 0.90026 0.90962 0.91623 1.91501 1.76546 1.68290 1.75555 1.21347 0.91583 1.02216 1.03763 1.20993 1.01107 0.92014 0.91630 1.19200 0.91178 1.02338 0.99478 0.95527 0.93098 0.91714 0.92665 0.92847 0.90713 0.87067 0.85563 0.82021 0.74860 0.83060 0.81818 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.95 71.98 0.64 -5.45 16 2 C 0.26 13.50 2.64 44.25 0.12 13.62 16 3 H 0.01 0.37 6.90 -2.39 -0.02 0.35 16 4 C -0.54 -29.69 8.37 25.60 0.21 -29.47 16 5 H 0.05 2.93 7.65 -2.91 -0.02 2.91 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -53.16 11.32 21.45 0.24 -52.91 16 8 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 12 N -0.60 -23.57 2.75 -826.78 -2.28 -25.85 16 13 C 0.07 1.97 8.05 127.77 1.03 3.00 16 14 C 0.49 18.56 6.72 87.66 0.59 19.14 16 15 O -0.59 -28.51 15.36 -3.02 -0.05 -28.56 16 16 C -0.05 -1.19 1.95 -12.33 -0.02 -1.22 16 17 H 0.17 2.19 7.32 -2.38 -0.02 2.17 16 18 C -0.14 -3.12 5.12 29.75 0.15 -2.97 16 19 C 0.51 15.99 7.37 87.63 0.65 16.64 16 20 O -0.57 -22.38 17.91 -3.05 -0.05 -22.44 16 21 N -0.66 -18.34 5.36 -304.10 -1.63 -19.98 16 22 C 0.19 4.71 6.50 38.16 0.25 4.96 16 23 C -0.20 -4.32 9.90 22.43 0.22 -4.10 16 24 C 0.12 2.51 7.30 22.36 0.16 2.67 16 25 F -0.14 -3.03 17.27 44.97 0.78 -2.25 16 26 C -0.17 -3.02 10.02 22.34 0.22 -2.79 16 27 C -0.04 -0.72 9.69 22.24 0.22 -0.50 16 28 C -0.12 -2.77 4.15 -19.75 -0.08 -2.86 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 31 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.05 1.52 6.78 -2.38 -0.02 1.51 16 34 H 0.07 2.12 6.43 -2.39 -0.02 2.11 16 35 H 0.11 1.81 6.11 -2.39 -0.01 1.79 16 36 H 0.13 2.89 4.42 -2.39 -0.01 2.88 16 37 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.41 10.61 8.83 -92.71 -0.82 9.79 16 39 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -80.40 338.79 4.12 -76.28 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.28 Total: 17.00 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 4.81 Total: 12.17 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.66 Total: -98.74 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.10 Total: -51.00 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -80.40 4.12 -76.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.063 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds