Wall clock time and date at job start Tue Mar 31 2020 12:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.46510 * 120.00089 * 59.99586 * 12 2 1 14 14 C 1.34774 * 120.00563 * 240.00245 * 12 2 1 15 15 O 1.21281 * 119.99531 * 359.97438 * 14 12 2 16 16 C 1.50693 * 120.00661 * 179.97438 * 14 12 2 17 17 H 1.08999 * 109.46369 * 300.02163 * 16 14 12 18 18 C 1.52911 * 109.46317 * 59.99793 * 16 14 12 19 19 C 1.50499 * 109.90517 * 71.43066 * 18 16 14 20 20 O 1.21283 * 119.61643 * 215.21322 * 19 18 16 21 21 N 1.34556 * 120.76500 * 35.18442 * 19 18 16 22 22 C 1.39821 * 120.46145 * 359.18030 * 21 19 18 23 23 C 1.38823 * 120.16798 * 161.53935 * 22 21 19 24 24 C 1.38322 * 119.87738 * 180.02562 * 23 22 21 25 25 F 1.35099 * 119.98674 * 179.97438 * 24 23 22 26 26 C 1.38537 * 120.03478 * 359.97438 * 24 23 22 27 27 C 1.38244 * 120.11859 * 359.97438 * 26 24 23 28 28 C 1.38094 * 120.05145 * 0.02780 * 27 26 24 29 29 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 31 31 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.46654 * 90.00209 * 13 12 2 34 34 H 1.08993 * 109.47171 * 209.99894 * 13 12 2 35 35 H 1.08996 * 109.46700 * 330.00687 * 13 12 2 36 36 H 1.08999 * 109.40009 * 191.56220 * 18 16 14 37 37 H 1.08998 * 109.39393 * 311.29761 * 18 16 14 38 38 H 0.97009 * 119.76784 * 179.20091 * 21 19 18 39 39 H 1.08003 * 120.06532 * 0.04692 * 23 22 21 40 40 H 1.07994 * 119.94408 * 179.97438 * 26 24 23 41 41 H 1.07998 * 119.96846 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0833 15 8 3.0865 1.1253 1.8912 16 6 3.2950 -0.7459 3.3140 17 1 2.4470 -1.0884 3.9069 18 6 4.1443 -1.9476 2.8981 19 6 5.4536 -1.4760 2.3251 20 8 5.9639 -2.0896 1.4118 21 7 6.0643 -0.3811 2.8138 22 6 5.4830 0.3497 3.8545 23 6 6.2540 1.2235 4.6089 24 6 5.6729 1.9431 5.6374 25 9 6.4213 2.7937 6.3733 26 6 4.3237 1.7920 5.9133 27 6 3.5550 0.9228 5.1618 28 6 4.1308 0.2023 4.1340 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7011 1.1560 -3.4844 33 1 2.4157 -2.7377 0.9716 34 1 1.6238 -2.2853 2.5001 35 1 0.6904 -2.3002 0.9845 36 1 4.3352 -2.5748 3.7688 37 1 3.6080 -2.5271 2.1467 38 1 6.9136 -0.0967 2.4414 39 1 7.3056 1.3415 4.3930 40 1 3.8715 2.3543 6.7169 41 1 2.5034 0.8073 5.3787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:18 Heat of formation + Delta-G solvation = -103.412064 kcal Electronic energy + Delta-G solvation = -27680.908426 eV Core-core repulsion = 23667.473633 eV Total energy + Delta-G solvation = -4013.434793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.92732 -42.48835 -40.40255 -39.65037 -37.13428 -36.24249 -35.51022 -34.41777 -31.56721 -30.84548 -30.24314 -27.78965 -27.31536 -26.36098 -24.25619 -24.01493 -23.01026 -20.96103 -19.83087 -19.37942 -18.62477 -18.49414 -17.80975 -17.47891 -17.04580 -16.72288 -16.69314 -16.59424 -16.48228 -15.90238 -15.70762 -15.10637 -14.82008 -14.66337 -14.50742 -14.26851 -13.97760 -13.83931 -13.45234 -13.39260 -13.13262 -12.96952 -12.85209 -12.69112 -12.62894 -12.34259 -12.25806 -12.14642 -12.09477 -11.70291 -11.27298 -11.14905 -10.66736 -10.47768 -9.81145 -9.31462 -9.15050 -8.16981 -6.32324 -0.02407 0.13811 1.35582 1.38535 1.38752 1.49464 1.75060 1.89470 2.25075 2.41435 2.70285 3.09872 3.10921 3.37358 3.42674 3.59161 3.73997 3.80625 4.05462 4.15302 4.30193 4.39952 4.50464 4.58317 4.70344 4.74657 4.80926 4.84144 4.92323 4.93788 5.06778 5.12837 5.14039 5.28419 5.47312 5.57503 5.64148 5.66905 5.76984 6.01426 6.04939 6.16826 6.76199 6.82012 6.83989 7.31240 7.47566 8.86817 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.003988 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.891332 B = 7018.766145 C = 7407.324604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.006 0.994 4 C -0.535 4.535 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.269 1.269 11 H -0.287 1.287 12 N -0.597 5.597 13 C 0.071 3.929 14 C 0.493 3.507 15 O -0.591 6.591 16 C -0.052 4.052 17 H 0.170 0.830 18 C -0.143 4.143 19 C 0.514 3.486 20 O -0.565 6.565 21 N -0.660 5.660 22 C 0.187 3.813 23 C -0.195 4.195 24 C 0.119 3.881 25 F -0.140 7.140 26 C -0.170 4.170 27 C -0.039 4.039 28 C -0.119 4.119 29 H 0.050 0.950 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.264 0.736 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.162 0.838 37 H 0.126 0.874 38 H 0.413 0.587 39 H 0.152 0.848 40 H 0.164 0.836 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -5.387 20.701 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.024 0.976 4 C -0.574 4.574 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.194 1.194 11 H -0.213 1.213 12 N -0.327 5.327 13 C -0.071 4.071 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.073 4.073 17 H 0.187 0.813 18 C -0.182 4.182 19 C 0.304 3.696 20 O -0.444 6.444 21 N -0.303 5.303 22 C 0.091 3.909 23 C -0.217 4.217 24 C 0.099 3.901 25 F -0.119 7.119 26 C -0.189 4.189 27 C -0.057 4.057 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.180 0.820 37 H 0.144 0.856 38 H 0.251 0.749 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.834 -5.124 19.983 20.983 hybrid contribution 1.103 0.479 -1.644 2.037 sum 4.937 -4.645 18.339 19.552 Atomic orbital electron populations 1.21856 0.96698 1.00317 1.00123 1.18486 0.91856 0.91955 0.81605 0.97581 1.21596 1.31430 1.12897 0.91476 0.92870 1.25632 0.95129 0.95656 1.01731 1.70014 1.37314 1.23798 1.24246 0.85543 0.78342 0.78507 0.79466 1.19560 1.19424 1.21346 1.48187 1.48932 1.13379 1.22195 1.22096 1.01562 0.80314 1.03107 1.21195 0.78490 0.86863 0.85310 1.90656 1.59317 1.19480 1.77800 1.20282 1.00040 0.93549 0.93380 0.81270 1.22195 0.90913 0.98578 1.06492 1.21348 0.87619 0.79172 0.81422 1.90769 1.67529 1.56510 1.29559 1.43593 1.25216 1.26648 1.34848 1.17393 0.92024 0.93114 0.88369 1.20704 1.01649 1.01197 0.98104 1.17481 0.90026 0.90927 0.91659 1.91498 1.76587 1.68316 1.75488 1.21349 0.91606 1.02217 1.03738 1.20992 1.01106 0.92028 0.91622 1.19193 0.91198 1.02320 0.99480 0.93098 0.95518 0.91698 0.92681 0.92888 0.87063 0.90699 0.82027 0.85589 0.74850 0.83055 0.81822 0.81361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.95 71.98 0.64 -5.46 16 2 C 0.26 13.47 2.64 44.25 0.12 13.59 16 3 H 0.01 0.39 6.90 -2.38 -0.02 0.37 16 4 C -0.54 -29.60 8.37 25.60 0.21 -29.38 16 5 H 0.05 2.94 7.65 -2.91 -0.02 2.92 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -53.13 11.31 21.45 0.24 -52.89 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 N -0.60 -23.58 2.75 -826.81 -2.28 -25.86 16 13 C 0.07 1.97 8.05 127.77 1.03 3.00 16 14 C 0.49 18.55 6.72 87.66 0.59 19.14 16 15 O -0.59 -28.48 15.36 -3.03 -0.05 -28.53 16 16 C -0.05 -1.19 1.95 -12.33 -0.02 -1.22 16 17 H 0.17 2.19 7.32 -2.39 -0.02 2.18 16 18 C -0.14 -3.13 5.12 29.75 0.15 -2.97 16 19 C 0.51 15.99 7.37 87.63 0.65 16.63 16 20 O -0.57 -22.38 17.91 -3.04 -0.05 -22.43 16 21 N -0.66 -18.31 5.36 -304.12 -1.63 -19.94 16 22 C 0.19 4.71 6.50 38.15 0.25 4.96 16 23 C -0.20 -4.31 9.90 22.43 0.22 -4.09 16 24 C 0.12 2.51 7.30 22.36 0.16 2.67 16 25 F -0.14 -3.03 17.27 44.97 0.78 -2.25 16 26 C -0.17 -3.01 10.02 22.34 0.22 -2.79 16 27 C -0.04 -0.72 9.68 22.24 0.22 -0.50 16 28 C -0.12 -2.77 4.15 -19.76 -0.08 -2.85 16 29 H 0.05 2.11 6.66 -2.38 -0.02 2.10 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 3.42 6.06 -2.39 -0.01 3.40 16 32 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 33 H 0.05 1.52 6.78 -2.39 -0.02 1.50 16 34 H 0.11 1.81 6.11 -2.39 -0.01 1.80 16 35 H 0.07 2.13 6.43 -2.39 -0.02 2.11 16 36 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.13 2.90 4.42 -2.39 -0.01 2.88 16 38 H 0.41 10.59 8.83 -92.70 -0.82 9.77 16 39 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -80.42 338.77 4.12 -76.30 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.28 Total: 16.84 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 4.81 Total: 12.18 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -3.66 Total: -98.68 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.10 Total: -50.96 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -80.42 4.12 -76.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.114 kcal (2) G-P(sol) polarization free energy of solvation -80.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds