Wall clock time and date at job start Tue Mar 31 2020 13:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00278 * 2 1 4 4 H 1.48500 * 109.46832 * 264.28208 * 3 2 1 5 5 H 1.48500 * 109.46938 * 24.27682 * 3 2 1 6 6 H 1.48494 * 109.47193 * 144.27987 * 3 2 1 7 7 C 1.38810 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99899 * 329.98855 * 7 2 1 9 9 N 1.36933 * 120.00155 * 149.98487 * 7 2 1 10 10 C 1.46960 * 120.59645 * 315.76325 * 9 7 2 11 11 C 1.53369 * 108.63599 * 235.20611 * 10 9 7 12 12 N 1.46972 * 108.63547 * 310.57110 * 11 10 9 13 13 C 1.34772 * 120.59649 * 235.20559 * 12 11 10 14 14 O 1.21704 * 119.99786 * 12.77315 * 13 12 11 15 15 C 1.46576 * 120.00045 * 192.77439 * 13 12 11 16 16 C 1.36121 * 125.45718 * 190.80558 * 15 13 12 17 17 C 1.38280 * 114.09740 * 180.02562 * 16 15 13 18 18 C 1.35236 * 113.92937 * 0.02562 * 17 16 15 19 19 S 1.70754 * 111.10933 * 359.97438 * 18 17 16 20 20 C 1.51709 * 124.33616 * 180.02562 * 18 17 16 21 21 C 1.53101 * 108.75304 * 343.44200 * 20 18 17 22 22 C 1.53144 * 108.99125 * 50.08014 * 21 20 18 23 23 C 1.52332 * 123.07229 * 179.73838 * 17 16 15 24 24 C 1.46961 * 118.80631 * 55.47872 * 12 11 10 25 25 C 1.46974 * 120.59406 * 135.73703 * 9 7 2 26 26 H 0.97002 * 119.99612 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.61652 * 115.45503 * 10 9 7 28 28 H 1.09006 * 109.60742 * 354.94792 * 10 9 7 29 29 H 1.09003 * 109.61351 * 190.82599 * 11 10 9 30 30 H 1.08998 * 109.61137 * 70.31614 * 11 10 9 31 31 H 1.08000 * 122.94638 * 0.06198 * 16 15 13 32 32 H 1.08995 * 109.59289 * 103.22020 * 20 18 17 33 33 H 1.09005 * 109.59261 * 223.66612 * 20 18 17 34 34 H 1.08993 * 109.55107 * 169.93235 * 21 20 18 35 35 H 1.08998 * 109.54950 * 290.22925 * 21 20 18 36 36 H 1.09000 * 109.51315 * 49.07728 * 22 21 20 37 37 H 1.08995 * 109.51452 * 169.17873 * 22 21 20 38 38 H 1.08994 * 109.57926 * 282.43274 * 23 17 16 39 39 H 1.08996 * 109.58353 * 42.84053 * 23 17 16 40 40 H 1.08998 * 109.61382 * 64.27075 * 24 12 11 41 41 H 1.09003 * 109.60488 * 184.77926 * 24 12 11 42 42 H 1.08998 * 109.61130 * 244.54115 * 25 9 7 43 43 H 1.08998 * 109.61027 * 5.05372 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6186 1.9766 -1.3931 5 1 1.3925 2.6845 0.5756 6 1 3.4821 1.4780 0.8174 7 6 2.0102 -1.2021 0.0005 8 1 1.5788 -2.0746 0.4688 9 7 3.2418 -1.2820 -0.5926 10 6 3.4797 -0.6708 -1.9078 11 6 4.0241 -1.7458 -2.8566 12 7 5.1320 -2.4438 -2.1892 13 6 6.3442 -2.5224 -2.7730 14 8 6.6008 -1.8272 -3.7384 15 6 7.3534 -3.4451 -2.2452 16 6 8.6657 -3.4704 -2.6058 17 6 9.4102 -4.4401 -1.9597 18 6 8.6976 -5.1878 -1.0867 19 16 7.0629 -4.6959 -1.0473 20 6 9.2776 -6.3143 -0.2524 21 6 10.6278 -6.7227 -0.8475 22 6 11.4809 -5.4680 -1.0551 23 6 10.8973 -4.6524 -2.2127 24 6 4.8926 -3.0598 -0.8765 25 6 4.3498 -1.9799 0.0749 26 1 -0.4850 0.8401 0.0004 27 1 4.2080 0.1343 -1.8108 28 1 2.5436 -0.2751 -2.3019 29 1 4.3855 -1.2770 -3.7718 30 1 3.2338 -2.4577 -3.0947 31 1 9.0884 -2.7921 -3.3323 32 1 9.4183 -5.9742 0.7735 33 1 8.5988 -7.1670 -0.2672 34 1 11.1375 -7.4013 -0.1637 35 1 10.4693 -7.2186 -1.8051 36 1 11.4763 -4.8697 -0.1440 37 1 12.5038 -5.7587 -1.2945 38 1 11.0350 -5.1912 -3.1501 39 1 11.4001 -3.6869 -2.2668 40 1 4.1627 -3.8631 -0.9770 41 1 5.8278 -3.4589 -0.4838 42 1 5.1400 -1.2680 0.3130 43 1 3.9883 -2.4488 0.9900 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103881872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:15 Heat of formation + Delta-G solvation = 1.199558 kcal Electronic energy + Delta-G solvation = -24794.029801 eV Core-core repulsion = 21351.344484 eV Total energy + Delta-G solvation = -3442.685316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.26572 -40.05842 -38.58672 -35.92428 -35.74966 -33.61787 -32.55272 -31.77887 -30.29269 -28.85806 -25.91240 -25.33662 -24.71582 -24.20481 -22.68351 -21.81178 -20.51172 -19.46843 -18.96173 -18.41653 -17.24280 -17.11325 -16.73295 -16.53998 -16.07149 -15.98125 -15.65324 -15.27240 -15.00329 -14.83532 -14.70422 -14.48684 -14.22769 -14.00039 -13.80689 -13.66735 -13.46154 -13.31928 -12.84877 -12.63464 -12.52671 -12.31932 -12.28990 -12.15600 -11.87265 -11.80575 -11.71626 -11.49042 -11.22494 -11.04470 -10.66054 -10.03772 -9.55246 -9.23530 -8.65715 -8.31493 -5.69214 -0.51153 0.44727 0.93163 1.29595 1.31055 1.38619 1.48261 1.80543 2.06897 2.39394 2.91839 3.29430 3.38404 3.70297 3.90092 3.99177 4.05168 4.05248 4.15799 4.18174 4.28733 4.31526 4.42668 4.45321 4.55760 4.64517 4.66976 4.69902 4.80186 4.84346 4.87752 4.91224 5.02402 5.05493 5.06760 5.15818 5.24391 5.38947 5.41077 5.48044 5.56148 5.87145 6.17861 6.27066 6.88382 6.92546 7.50981 8.03968 8.87632 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.003273 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.835795 B = 8551.712066 C = 8963.880421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.270 4.270 8 H 0.052 0.948 9 N -0.610 5.610 10 C 0.130 3.870 11 C 0.108 3.892 12 N -0.605 5.605 13 C 0.585 3.415 14 O -0.578 6.578 15 C -0.306 4.306 16 C -0.047 4.047 17 C -0.135 4.135 18 C -0.211 4.211 19 S 0.252 5.748 20 C -0.053 4.053 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.057 4.057 24 C 0.094 3.906 25 C 0.128 3.872 26 H 0.266 0.734 27 H 0.018 0.982 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.028 0.972 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.101 -15.512 -0.677 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.399 4.399 8 H 0.070 0.930 9 N -0.335 5.335 10 C 0.004 3.996 11 C -0.015 4.015 12 N -0.336 5.336 13 C 0.376 3.624 14 O -0.460 6.460 15 C -0.426 4.426 16 C -0.081 4.081 17 C -0.146 4.146 18 C -0.330 4.330 19 S 0.524 5.476 20 C -0.092 4.092 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.096 4.096 24 C -0.032 4.032 25 C 0.002 3.998 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.046 0.954 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.747 -15.561 -0.336 26.743 hybrid contribution 0.912 1.997 -0.889 2.369 sum 22.659 -13.564 -1.225 26.437 Atomic orbital electron populations 1.70064 1.07549 1.27839 1.50989 1.26098 0.95245 1.00303 0.97484 0.86214 0.79092 0.81975 0.78551 1.20242 1.22440 1.20051 1.18563 0.92305 0.94137 1.34916 0.93027 1.44308 1.08309 1.64888 1.16009 1.21545 0.98425 0.93688 0.85965 1.22068 0.88007 0.95637 0.95833 1.47906 1.10136 1.55155 1.20453 1.17417 0.81234 0.81322 0.82453 1.90742 1.79488 1.45663 1.30139 1.24122 0.98830 1.08010 1.11610 1.20722 0.91140 0.97906 0.98343 1.19675 0.98726 0.97038 0.99208 1.25755 1.01026 1.03286 1.02919 1.83171 1.05432 1.24075 1.34938 1.20579 0.97460 0.93496 0.97681 1.21584 0.94141 0.97763 1.01768 1.21589 0.99662 0.96390 0.97903 1.20653 0.87880 1.01290 0.99765 1.22823 1.01279 0.96705 0.82357 1.21622 0.89831 0.93200 0.95124 0.92426 0.96383 0.91674 0.89481 0.90326 0.84111 0.88815 0.89085 0.89193 0.91674 0.91842 0.89721 0.90002 0.90432 0.89429 0.88460 0.95426 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.13 13.97 21.65 0.30 -54.83 16 2 C 0.01 0.49 4.94 84.86 0.42 0.91 16 3 Si 0.91 45.31 26.33 68.60 1.81 47.12 16 4 H -0.28 -13.35 7.08 99.48 0.70 -12.64 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.27 -14.57 9.69 84.03 0.81 -13.76 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 9 N -0.61 -28.05 2.38 -697.33 -1.66 -29.71 16 10 C 0.13 5.67 4.72 86.42 0.41 6.08 16 11 C 0.11 4.08 6.59 86.41 0.57 4.65 16 12 N -0.60 -21.33 2.94 -821.96 -2.42 -23.74 16 13 C 0.59 21.04 7.59 86.42 0.66 21.70 16 14 O -0.58 -24.29 16.33 -4.36 -0.07 -24.36 16 15 C -0.31 -8.88 6.14 23.95 0.15 -8.73 16 16 C -0.05 -1.22 9.82 21.79 0.21 -1.00 16 17 C -0.14 -2.75 5.75 -20.02 -0.12 -2.87 16 18 C -0.21 -3.91 6.15 25.32 0.16 -3.75 16 19 S 0.25 5.39 18.45 -56.49 -1.04 4.35 16 20 C -0.05 -0.63 6.22 30.20 0.19 -0.45 16 21 C -0.11 -1.07 5.93 30.68 0.18 -0.89 16 22 C -0.12 -1.23 5.90 30.70 0.18 -1.04 16 23 C -0.06 -0.81 6.13 30.43 0.19 -0.63 16 24 C 0.09 2.89 5.64 86.57 0.49 3.38 16 25 C 0.13 4.74 6.69 86.56 0.58 5.32 16 26 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.02 0.82 7.71 -2.39 -0.02 0.80 16 28 H 0.06 3.04 7.00 -2.38 -0.02 3.02 16 29 H 0.09 3.25 7.03 -2.39 -0.02 3.24 16 30 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 36 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.10 2.54 3.30 -23.28 -0.08 2.47 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 3.13 7.93 -2.39 -0.02 3.11 16 Total: -1.00 -68.33 346.47 2.93 -65.40 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.94 Total: 6.86 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.07 Total: 8.92 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -3.77 Total: -108.28 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.81 Total: 47.12 kcal Atomic # 16 Polarization: 5.39 SS G_CDS: -1.04 Total: 4.35 kcal Total: -68.33 2.93 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103881872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.598 kcal (2) G-P(sol) polarization free energy of solvation -68.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds