Wall clock time and date at job start Tue Mar 31 2020 13:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48497 * 109.47021 * 240.00370 * 3 2 1 5 5 H 1.48499 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47145 * 120.00268 * 3 2 1 7 7 C 1.38657 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00100 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00000 * 185.05927 * 9 7 2 11 11 C 1.38874 * 120.07194 * 354.46775 * 10 9 7 12 12 C 1.38098 * 119.93279 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.07035 * 0.25429 * 12 11 10 14 14 C 1.50695 * 119.93408 * 179.72120 * 13 12 11 15 15 C 1.50700 * 109.47063 * 90.00432 * 14 13 12 16 16 O 1.20826 * 120.00143 * 359.97438 * 15 14 13 17 17 O 1.34233 * 120.00148 * 180.02562 * 15 14 13 18 18 C 1.45199 * 117.00147 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47047 * 179.97438 * 18 17 15 20 20 H 1.08994 * 109.48234 * 55.02380 * 19 18 17 21 21 C 1.53100 * 109.47838 * 175.05514 * 19 18 17 22 22 C 1.53182 * 109.15950 * 177.58765 * 21 19 18 23 23 C 1.53173 * 109.03930 * 303.01752 * 22 21 19 24 24 C 1.53092 * 109.16192 * 56.98457 * 23 22 21 25 25 O 1.42903 * 109.48082 * 294.99363 * 19 18 17 26 26 C 1.38307 * 120.13424 * 359.49465 * 13 12 11 27 27 C 1.38090 * 120.07102 * 0.50636 * 26 13 12 28 28 H 0.97002 * 120.00107 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.03112 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.96373 * 179.97438 * 12 11 10 31 31 H 1.09006 * 109.47492 * 210.00476 * 14 13 12 32 32 H 1.09004 * 109.47311 * 330.00575 * 14 13 12 33 33 H 1.09001 * 109.46950 * 299.99667 * 18 17 15 34 34 H 1.08995 * 109.47229 * 59.99718 * 18 17 15 35 35 H 1.08999 * 109.52457 * 297.49472 * 21 19 18 36 36 H 1.08999 * 109.52106 * 57.68623 * 21 19 18 37 37 H 1.09002 * 109.53906 * 183.14881 * 22 21 19 38 38 H 1.08998 * 109.61638 * 62.93409 * 22 21 19 39 39 H 1.08995 * 109.52778 * 297.08001 * 23 22 21 40 40 H 1.08997 * 109.57171 * 176.91577 * 23 22 21 41 41 H 1.09001 * 109.48219 * 182.40716 * 24 23 22 42 42 H 1.09006 * 109.48025 * 62.36936 * 24 23 22 43 43 H 1.08004 * 119.96341 * 180.25519 * 26 13 12 44 44 H 1.08004 * 120.04017 * 179.72540 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4572 -3.4395 0.0922 12 6 4.2025 -4.5970 0.2009 13 6 3.5688 -5.8207 0.3177 14 6 4.3850 -7.0825 0.4298 15 6 4.6650 -7.3723 1.8819 16 8 4.2453 -6.6301 2.7379 17 8 5.3816 -8.4545 2.2243 18 6 5.6118 -8.6714 3.6414 19 6 6.4399 -9.9432 3.8348 20 1 7.3580 -9.8714 3.2518 21 6 6.7874 -10.1057 5.3169 22 6 7.5643 -11.4116 5.5109 23 6 6.7236 -12.5767 4.9799 24 6 6.3786 -12.3188 3.5108 25 8 5.6846 -11.0747 3.3972 26 6 2.1875 -5.8884 0.3365 27 6 1.4367 -4.7345 0.2282 28 1 -0.4850 0.8401 0.0004 29 1 3.9526 -2.4845 -0.0022 30 1 5.2812 -4.5470 0.1902 31 1 3.8308 -7.9138 -0.0063 32 1 5.3271 -6.9545 -0.1034 33 1 6.1510 -7.8198 4.0564 34 1 4.6553 -8.7798 4.1525 35 1 7.4009 -9.2653 5.6415 36 1 5.8701 -10.1369 5.9049 37 1 7.7665 -11.5615 6.5715 38 1 8.5057 -11.3621 4.9638 39 1 5.8050 -12.6578 5.5609 40 1 7.2906 -13.5039 5.0634 41 1 5.7445 -13.1239 3.1395 42 1 7.2960 -12.2782 2.9236 43 1 1.6956 -6.8451 0.4320 44 1 0.3581 -4.7884 0.2385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110163819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:39 Heat of formation + Delta-G solvation = -147.521990 kcal Electronic energy + Delta-G solvation = -25697.800782 eV Core-core repulsion = 21773.620793 eV Total energy + Delta-G solvation = -3924.179989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.48960 -39.63073 -38.91101 -36.88145 -36.04428 -34.04697 -32.70593 -32.42093 -31.40759 -30.15123 -27.99323 -26.62163 -25.17958 -24.55559 -22.71187 -21.97189 -21.50191 -20.71384 -20.03390 -17.97785 -17.48536 -17.12793 -17.01764 -16.64034 -16.07832 -15.82924 -15.01809 -14.85960 -14.67031 -14.58702 -14.34477 -13.93555 -13.64388 -13.50793 -13.27739 -13.09273 -12.85996 -12.69700 -12.49447 -12.41244 -11.85912 -11.70760 -11.57335 -11.50507 -11.25339 -11.19677 -10.87524 -10.81988 -10.75399 -10.63418 -10.60515 -10.42927 -10.23071 -9.82066 -9.32229 -8.81261 -8.14937 -7.18022 -6.43536 -4.02165 2.14321 2.26045 2.43873 2.84385 3.14300 3.16483 3.18445 3.33998 3.98208 4.25685 4.35705 4.37446 4.50234 4.61312 4.71846 4.76075 4.97750 4.98220 5.09198 5.10429 5.15493 5.24815 5.26056 5.29781 5.33259 5.34690 5.45631 5.51215 5.57661 5.64640 5.68697 5.73709 5.82793 5.86003 6.22503 6.42249 6.49972 6.71848 6.85386 6.92146 7.06162 7.24284 7.36236 7.45474 7.83461 7.97719 8.01463 9.01838 9.71800 10.74310 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.031255 B = 0.001982 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.651459 B =14125.508166 C =14517.876425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.159 3.841 11 C -0.234 4.234 12 C -0.053 4.053 13 C -0.183 4.183 14 C -0.050 4.050 15 C 0.454 3.546 16 O -0.493 6.493 17 O -0.357 6.357 18 C 0.073 3.927 19 C 0.093 3.907 20 H 0.070 0.930 21 C -0.150 4.150 22 C -0.121 4.121 23 C -0.159 4.159 24 C 0.060 3.940 25 O -0.371 6.371 26 C -0.056 4.056 27 C -0.192 4.192 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.110 0.890 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.651 -22.648 7.050 28.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.105 3.895 11 C -0.253 4.253 12 C -0.072 4.072 13 C -0.184 4.184 14 C -0.087 4.087 15 C 0.297 3.703 16 O -0.379 6.379 17 O -0.274 6.274 18 C -0.001 4.001 19 C 0.035 3.965 20 H 0.088 0.912 21 C -0.188 4.188 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.017 4.017 25 O -0.290 6.290 26 C -0.074 4.074 27 C -0.211 4.211 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.128 0.872 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.893 -22.177 7.251 27.680 hybrid contribution 0.791 0.813 0.404 1.205 sum 15.685 -21.363 7.656 27.587 Atomic orbital electron populations 1.70031 1.05957 1.27789 1.45903 1.25299 0.95855 0.98850 0.96529 0.85775 0.78695 0.79740 0.79183 1.19490 1.20276 1.19499 1.21290 0.91800 0.80819 1.52901 0.89077 1.83975 1.34387 1.11475 1.78080 1.19400 0.90307 0.88034 0.91771 1.21103 0.93801 0.98774 1.11614 1.20529 0.98140 0.91688 0.96811 1.18652 0.93286 0.92578 1.13849 1.20094 1.01944 0.98192 0.88472 1.24233 0.74793 0.77778 0.93522 1.90705 1.47829 1.47286 1.52031 1.86541 1.67533 1.45646 1.27716 1.22985 1.01082 0.95917 0.80079 1.22094 0.94548 0.85394 0.94426 0.91247 1.22142 1.01747 0.98854 0.96035 1.21562 0.98423 0.94051 1.01768 1.22224 1.01016 0.98793 0.97640 1.22588 0.97384 0.86488 0.95213 1.88025 1.41465 1.14306 1.85166 1.20435 0.92680 0.96885 0.97440 1.20162 0.99570 0.90244 1.11132 0.91959 0.85476 0.87646 0.87727 0.87862 0.89790 0.90451 0.90304 0.90475 0.91111 0.91609 0.90920 0.90787 0.88695 0.93095 0.87154 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.13 9.76 0.06 0.00 -5.12 16 10 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.23 9.17 -39.40 -0.36 -5.59 16 12 C -0.05 -1.01 9.69 -39.61 -0.38 -1.40 16 13 C -0.18 -3.22 4.38 -104.58 -0.46 -3.68 16 14 C -0.05 -0.66 5.94 -29.04 -0.17 -0.84 16 15 C 0.45 6.86 7.95 36.01 0.29 7.15 16 16 O -0.49 -9.26 15.78 -18.75 -0.30 -9.56 16 17 O -0.36 -4.73 10.19 -42.03 -0.43 -5.16 16 18 C 0.07 0.82 5.13 37.15 0.19 1.01 16 19 C 0.09 0.84 2.93 -26.68 -0.08 0.76 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 21 C -0.15 -1.02 5.42 -26.59 -0.14 -1.17 16 22 C -0.12 -0.67 6.03 -26.55 -0.16 -0.83 16 23 C -0.16 -0.90 6.14 -26.59 -0.16 -1.06 16 24 C 0.06 0.42 6.84 37.20 0.25 0.68 16 25 O -0.37 -3.86 10.38 -38.78 -0.40 -4.26 16 26 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 27 C -0.19 -4.21 9.99 -39.40 -0.39 -4.60 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.13 2.82 5.64 -52.48 -0.30 2.53 16 30 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.10 1.17 8.09 -51.93 -0.42 0.75 16 32 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 44 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -33.92 370.62 -8.30 -42.22 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.46 Total: 2.49 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.03 Total: -17.14 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.76 Total: -24.80 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.13 Total: -24.10 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.92 -8.30 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110163819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.301 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds