Wall clock time and date at job start Tue Mar 31 2020 12:18:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47203 * 179.97438 * 2 1
4 4 O 1.42897 * 109.46789 * 228.96724 * 3 2 1
5 5 C 1.36028 * 117.00180 * 180.02562 * 4 3 2
6 6 C 1.38521 * 120.05150 * 0.02562 * 5 4 3
7 7 C 1.38260 * 120.03707 * 179.97438 * 6 5 4
8 8 C 1.38462 * 120.14714 * 359.97438 * 7 6 5
9 9 F 1.35105 * 119.94303 * 180.02562 * 8 7 6
10 10 C 1.38382 * 120.11469 * 359.78842 * 8 7 6
11 11 C 1.38707 * 119.96074 * 0.44380 * 10 8 7
12 12 N 1.40164 * 120.07598 * 179.80788 * 11 10 8
13 13 C 1.34777 * 119.99818 * 34.66422 * 12 11 10
14 14 O 1.21593 * 119.99937 * 355.55703 * 13 12 11
15 15 N 1.34769 * 119.99950 * 175.56129 * 13 12 11
16 16 C 1.46497 * 120.00402 * 359.97438 * 15 13 12
17 17 C 1.46504 * 119.99833 * 179.97438 * 15 13 12
18 18 H 1.08994 * 109.47174 * 0.02562 * 17 15 13
19 19 C 1.53008 * 109.47043 * 119.99835 * 17 15 13
20 20 C 1.50699 * 109.47152 * 239.99939 * 17 15 13
21 21 H 1.07997 * 120.00034 * 359.97438 * 20 17 15
22 22 C 1.37879 * 120.00250 * 180.02562 * 20 17 15
23 23 N 1.31510 * 120.00335 * 180.02562 * 22 20 17
24 24 Si 1.86806 * 119.99523 * 359.97438 * 22 20 17
25 25 H 1.48500 * 109.47158 * 90.00638 * 24 22 20
26 26 H 1.48504 * 109.46715 * 210.00111 * 24 22 20
27 27 H 1.48488 * 109.47413 * 330.00315 * 24 22 20
28 28 H 4.38445 * 5.44423 * 179.97438 * 4 1 2
29 29 H 1.08996 * 109.46937 * 108.96452 * 3 2 1
30 30 H 1.09000 * 109.46995 * 348.96366 * 3 2 1
31 31 H 1.08004 * 119.98174 * 359.97438 * 6 5 4
32 32 H 1.07997 * 119.92360 * 180.02562 * 7 6 5
33 33 H 1.08002 * 120.02416 * 180.25422 * 10 8 7
34 34 H 0.96993 * 119.99986 * 214.65991 * 12 11 10
35 35 H 1.09000 * 109.47274 * 270.00329 * 16 15 13
36 36 H 1.08998 * 109.46744 * 30.00219 * 16 15 13
37 37 H 1.09000 * 109.47530 * 149.99829 * 16 15 13
38 38 H 1.09007 * 109.46986 * 60.00253 * 19 17 15
39 39 H 1.09003 * 109.46961 * 179.97438 * 19 17 15
40 40 H 1.08996 * 109.47058 * 299.99918 * 19 17 15
41 41 H 0.96993 * 120.00355 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 8 3.1219 0.8853 1.0163
5 6 4.4704 1.0034 1.1505
6 6 5.3156 0.2840 0.3217
7 6 6.6862 0.4046 0.4580
8 6 7.2179 1.2445 1.4219
9 9 8.5578 1.3597 1.5512
10 6 6.3792 1.9699 2.2499
11 6 5.0036 1.8487 2.1204
12 7 4.1519 2.5792 2.9604
13 6 4.5021 3.8166 3.3637
14 8 5.5913 4.2676 3.0658
15 7 3.6451 4.5539 4.0973
16 6 2.3326 4.0108 4.4559
17 6 4.0260 5.8988 4.5362
18 1 5.0291 6.1279 4.1765
19 6 3.0364 6.9194 3.9702
20 6 4.0054 5.9605 6.0418
21 1 3.7351 5.0857 6.6144
22 6 4.3305 7.1342 6.6882
23 7 4.3129 7.1880 8.0021
24 14 4.7972 8.6476 5.6975
25 1 3.5771 9.4403 5.4002
26 1 5.7480 9.4776 6.4802
27 1 5.4374 8.2283 4.4251
28 1 -1.0501 0.0000 -0.0003
29 1 3.0092 0.3348 -0.9719
30 1 3.0098 -1.0078 0.1967
31 1 4.9038 -0.3716 -0.4313
32 1 7.3435 -0.1568 -0.1893
33 1 6.7956 2.6277 2.9985
34 1 3.3105 2.1942 3.2514
35 1 1.6087 4.2700 3.6833
36 1 2.3995 2.9263 4.5419
37 1 2.0132 4.4318 5.4091
38 1 2.0330 6.6905 4.3296
39 1 3.3195 7.9199 4.2972
40 1 3.0514 6.8747 2.8813
41 1 4.5420 8.0135 8.4568
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000120562064.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:18:05
Heat of formation + Delta-G solvation = -0.326871 kcal
Electronic energy + Delta-G solvation = -26596.746170 eV
Core-core repulsion = 22587.781487 eV
Total energy + Delta-G solvation = -4008.964683 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.132 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-48.75345 -40.82703 -39.55097 -37.53161 -35.74638 -34.52482 -33.71432 -32.72469
-30.74513 -29.94304 -29.11866 -27.58054 -26.31408 -25.14359 -23.58257 -22.45130
-21.34494 -19.33037 -18.98121 -18.62630 -17.88834 -17.42860 -16.65365 -16.53360
-16.27035 -15.95688 -15.43662 -15.13068 -15.05231 -14.89248 -14.37461 -14.12915
-13.47180 -13.36826 -13.26923 -12.96170 -12.86038 -12.60233 -12.42387 -12.24250
-11.95180 -11.68172 -11.49625 -11.45803 -11.17046 -10.95311 -10.73592 -10.50218
-10.27225 -10.15323 -9.65982 -9.51444 -9.27693 -8.66393 -8.63069 -7.99730
-7.65390 -6.15774 -4.16753 1.08245 1.12277 1.91944 2.38135 2.94490
3.23705 3.27331 3.36644 3.37677 3.40746 3.77187 3.97815 4.20557
4.34745 4.39500 4.59291 4.62625 4.84961 4.86120 5.15219 5.17573
5.27840 5.46219 5.55144 5.65874 5.83794 5.90020 5.96524 6.15281
6.18534 6.24667 6.32177 6.45862 6.53920 6.72500 6.81255 6.82881
7.12078 7.17755 7.31403 7.48847 7.60650 8.31182 8.46669 8.84094
9.01394 9.45051 10.96806
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.012776 B = 0.003790 C = 0.003091
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2191.145674 B = 7386.659443 C = 9055.830890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.202 4.202
3 C 0.174 3.826
4 O -0.307 6.307
5 C 0.084 3.916
6 C -0.163 4.163
7 C -0.140 4.140
8 C 0.087 3.913
9 F -0.138 7.138
10 C -0.123 4.123
11 C 0.187 3.813
12 N -0.684 5.684
13 C 0.700 3.300
14 O -0.580 6.580
15 N -0.595 5.595
16 C 0.082 3.918
17 C 0.244 3.756
18 H 0.065 0.935
19 C -0.161 4.161
20 C -0.530 4.530
21 H 0.079 0.921
22 C 0.077 3.923
23 N -0.894 5.894
24 Si 0.883 3.117
25 H -0.277 1.277
26 H -0.294 1.294
27 H -0.262 1.262
28 H 0.225 0.775
29 H 0.087 0.913
30 H 0.088 0.912
31 H 0.140 0.860
32 H 0.137 0.863
33 H 0.166 0.834
34 H 0.410 0.590
35 H 0.046 0.954
36 H 0.050 0.950
37 H 0.091 0.909
38 H 0.055 0.945
39 H 0.051 0.949
40 H 0.033 0.967
41 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.989 -16.631 -16.923 24.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.202 4.202
3 C 0.100 3.900
4 O -0.222 6.222
5 C 0.037 3.963
6 C -0.183 4.183
7 C -0.160 4.160
8 C 0.067 3.933
9 F -0.117 7.117
10 C -0.144 4.144
11 C 0.089 3.911
12 N -0.334 5.334
13 C 0.402 3.598
14 O -0.458 6.458
15 N -0.329 5.329
16 C -0.062 4.062
17 C 0.142 3.858
18 H 0.083 0.917
19 C -0.219 4.219
20 C -0.568 4.568
21 H 0.097 0.903
22 C -0.126 4.126
23 N -0.532 5.532
24 Si 0.713 3.287
25 H -0.204 1.204
26 H -0.221 1.221
27 H -0.187 1.187
28 H 0.241 0.759
29 H 0.105 0.895
30 H 0.105 0.895
31 H 0.157 0.843
32 H 0.155 0.845
33 H 0.183 0.817
34 H 0.248 0.752
35 H 0.065 0.935
36 H 0.068 0.932
37 H 0.110 0.890
38 H 0.074 0.926
39 H 0.069 0.931
40 H 0.052 0.948
41 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -4.344 -15.970 -16.777 23.567
hybrid contribution -0.245 0.561 -0.329 0.695
sum -4.589 -15.409 -17.106 23.476
Atomic orbital electron populations
1.25046 0.95893 0.98473 0.97925 1.22244 0.93529 1.02069 1.02346
1.19251 0.84981 0.94144 0.91594 1.86095 1.18746 1.62886 1.54452
1.18640 0.82235 0.99781 0.95688 1.20772 0.93008 1.02922 1.01576
1.20807 0.95214 1.00608 0.99363 1.17377 0.77401 0.99838 0.98726
1.91498 1.29747 1.95061 1.95370 1.21291 0.91078 1.00432 1.01611
1.16492 0.89108 0.94150 0.91356 1.42743 1.23773 1.15709 1.51128
1.15897 0.84597 0.79836 0.79424 1.90863 1.21595 1.71575 1.61802
1.47161 1.15314 1.17610 1.52766 1.21623 0.84884 0.97285 1.02374
1.19255 0.95483 0.75759 0.95277 0.91711 1.22463 1.01268 0.99777
0.98395 1.21159 1.47925 0.99118 0.88583 0.90278 1.24844 0.94432
0.98554 0.94791 1.69865 1.48216 1.27697 1.07385 0.86921 0.78224
0.83105 0.80482 1.20392 1.22118 1.18710 0.75873 0.89478 0.89468
0.84272 0.84528 0.81678 0.75179 0.93530 0.93160 0.89045 0.92568
0.93067 0.94788 0.92391
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.18 19.25 29.55 0.57 -0.61 16
2 C -0.20 -1.82 13.73 -37.12 -0.51 -2.33 16
3 C 0.17 1.39 5.21 34.37 0.18 1.57 16
4 O -0.31 -3.51 9.66 -19.83 -0.19 -3.70 16
5 C 0.08 1.03 6.70 -39.10 -0.26 0.76 16
6 C -0.16 -1.58 9.03 -39.47 -0.36 -1.94 16
7 C -0.14 -1.49 10.02 -39.49 -0.40 -1.89 16
8 C 0.09 1.20 7.29 -39.45 -0.29 0.92 16
9 F -0.14 -2.02 17.26 2.25 0.04 -1.99 16
10 C -0.12 -1.98 8.67 -39.36 -0.34 -2.32 16
11 C 0.19 2.84 6.32 -83.49 -0.53 2.32 16
12 N -0.68 -11.13 5.07 -14.11 -0.07 -11.20 16
13 C 0.70 14.35 8.13 -86.92 -0.71 13.64 16
14 O -0.58 -13.76 13.09 5.28 0.07 -13.69 16
15 N -0.59 -12.27 2.75 -181.01 -0.50 -12.77 16
16 C 0.08 1.33 9.24 59.85 0.55 1.88 16
17 C 0.24 5.88 2.23 -69.08 -0.15 5.72 16
18 H 0.07 1.73 5.95 -51.93 -0.31 1.43 16
19 C -0.16 -3.47 8.67 37.16 0.32 -3.14 16
20 C -0.53 -14.49 8.57 -34.44 -0.30 -14.79 16
21 H 0.08 2.32 7.58 -52.49 -0.40 1.92 16
22 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16
23 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16
24 Si 0.88 21.78 24.37 -169.99 -4.14 17.64 16
25 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16
26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
27 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16
28 H 0.22 0.87 7.80 -54.08 -0.42 0.45 16
29 H 0.09 0.54 7.66 -51.93 -0.40 0.15 16
30 H 0.09 0.50 7.66 -51.93 -0.40 0.10 16
31 H 0.14 0.84 6.29 -52.48 -0.33 0.51 16
32 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16
33 H 0.17 3.10 6.19 -52.49 -0.33 2.78 16
34 H 0.41 5.71 6.27 -40.82 -0.26 5.45 16
35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.05 0.67 6.30 -51.93 -0.33 0.34 16
37 H 0.09 1.61 7.02 -51.93 -0.36 1.25 16
38 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16
39 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16
40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16
41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
LS Contribution 347.51 15.07 5.24 5.24
Total: -1.00 -33.63 347.51 -5.64 -39.27
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: -4.54 Total: 5.30 kcal
Atomic # 6 Polarization: 4.19 SS G_CDS: -2.31 Total: 1.88 kcal
Atomic # 7 Polarization: -50.14 SS G_CDS: 0.20 Total: -49.94 kcal
Atomic # 8 Polarization: -17.27 SS G_CDS: -0.12 Total: -17.40 kcal
Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -33.63 -5.64 -39.27 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000120562064.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.944 kcal
(2) G-P(sol) polarization free energy of solvation -33.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.314 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.327 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds