Wall clock time and date at job start Tue Mar 31 2020 12:18:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47203 * 179.97438 * 2 1
4 4 O 1.42897 * 109.46789 * 228.96724 * 3 2 1
5 5 C 1.36028 * 117.00180 * 180.02562 * 4 3 2
6 6 C 1.38521 * 120.05150 * 0.02562 * 5 4 3
7 7 C 1.38260 * 120.03707 * 179.97438 * 6 5 4
8 8 C 1.38462 * 120.14714 * 359.97438 * 7 6 5
9 9 F 1.35105 * 119.94303 * 180.02562 * 8 7 6
10 10 C 1.38382 * 120.11469 * 359.78842 * 8 7 6
11 11 C 1.38707 * 119.96074 * 0.44380 * 10 8 7
12 12 N 1.40164 * 120.07598 * 179.80788 * 11 10 8
13 13 C 1.34777 * 119.99818 * 34.66422 * 12 11 10
14 14 O 1.21593 * 119.99937 * 355.55703 * 13 12 11
15 15 N 1.34769 * 119.99950 * 175.56129 * 13 12 11
16 16 C 1.46497 * 120.00402 * 359.97438 * 15 13 12
17 17 C 1.46504 * 119.99833 * 179.97438 * 15 13 12
18 18 H 1.08994 * 109.47174 * 0.02562 * 17 15 13
19 19 C 1.53008 * 109.47043 * 119.99835 * 17 15 13
20 20 C 1.50699 * 109.47152 * 239.99939 * 17 15 13
21 21 H 1.07997 * 120.00034 * 359.97438 * 20 17 15
22 22 C 1.37879 * 120.00250 * 180.02562 * 20 17 15
23 23 N 1.31510 * 120.00335 * 180.02562 * 22 20 17
24 24 Si 1.86806 * 119.99523 * 359.97438 * 22 20 17
25 25 H 1.48500 * 109.47158 * 90.00638 * 24 22 20
26 26 H 1.48504 * 109.46715 * 210.00111 * 24 22 20
27 27 H 1.48488 * 109.47413 * 330.00315 * 24 22 20
28 28 H 4.38445 * 5.44423 * 179.97438 * 4 1 2
29 29 H 1.08996 * 109.46937 * 108.96452 * 3 2 1
30 30 H 1.09000 * 109.46995 * 348.96366 * 3 2 1
31 31 H 1.08004 * 119.98174 * 359.97438 * 6 5 4
32 32 H 1.07997 * 119.92360 * 180.02562 * 7 6 5
33 33 H 1.08002 * 120.02416 * 180.25422 * 10 8 7
34 34 H 0.96993 * 119.99986 * 214.65991 * 12 11 10
35 35 H 1.09000 * 109.47274 * 270.00329 * 16 15 13
36 36 H 1.08998 * 109.46744 * 30.00219 * 16 15 13
37 37 H 1.09000 * 109.47530 * 149.99829 * 16 15 13
38 38 H 1.09007 * 109.46986 * 60.00253 * 19 17 15
39 39 H 1.09003 * 109.46961 * 179.97438 * 19 17 15
40 40 H 1.08996 * 109.47058 * 299.99918 * 19 17 15
41 41 H 0.96993 * 120.00355 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 8 3.1219 0.8853 1.0163
5 6 4.4704 1.0034 1.1505
6 6 5.3156 0.2840 0.3217
7 6 6.6862 0.4046 0.4580
8 6 7.2179 1.2445 1.4219
9 9 8.5578 1.3597 1.5512
10 6 6.3792 1.9699 2.2499
11 6 5.0036 1.8487 2.1204
12 7 4.1519 2.5792 2.9604
13 6 4.5021 3.8166 3.3637
14 8 5.5913 4.2676 3.0658
15 7 3.6451 4.5539 4.0973
16 6 2.3326 4.0108 4.4559
17 6 4.0260 5.8988 4.5362
18 1 5.0291 6.1279 4.1765
19 6 3.0364 6.9194 3.9702
20 6 4.0054 5.9605 6.0418
21 1 3.7351 5.0857 6.6144
22 6 4.3305 7.1342 6.6882
23 7 4.3129 7.1880 8.0021
24 14 4.7972 8.6476 5.6975
25 1 3.5771 9.4403 5.4002
26 1 5.7480 9.4776 6.4802
27 1 5.4374 8.2283 4.4251
28 1 -1.0501 0.0000 -0.0003
29 1 3.0092 0.3348 -0.9719
30 1 3.0098 -1.0078 0.1967
31 1 4.9038 -0.3716 -0.4313
32 1 7.3435 -0.1568 -0.1893
33 1 6.7956 2.6277 2.9985
34 1 3.3105 2.1942 3.2514
35 1 1.6087 4.2700 3.6833
36 1 2.3995 2.9263 4.5419
37 1 2.0132 4.4318 5.4091
38 1 2.0330 6.6905 4.3296
39 1 3.3195 7.9199 4.2972
40 1 3.0514 6.8747 2.8813
41 1 4.5420 8.0135 8.4568
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000120562064.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:18:03
Heat of formation + Delta-G solvation = -22.838819 kcal
Electronic energy + Delta-G solvation = -26597.722362 eV
Core-core repulsion = 22587.781487 eV
Total energy + Delta-G solvation = -4009.940875 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 320.132 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-49.84204 -42.01304 -40.78036 -38.56267 -37.35352 -35.92527 -34.69331 -34.30407
-32.42181 -31.04360 -30.16489 -28.29051 -27.75919 -27.17457 -24.81546 -23.49700
-22.83035 -20.86493 -19.95943 -19.46190 -19.09280 -18.77455 -18.42216 -17.63956
-17.37644 -17.05789 -16.74477 -16.50668 -16.45226 -15.77654 -15.74807 -15.31379
-15.17922 -14.68053 -14.42756 -14.20214 -14.08418 -13.99058 -13.77978 -13.69366
-13.32436 -13.10527 -13.05389 -12.68684 -12.47315 -12.40398 -12.04993 -11.60933
-11.59307 -11.46525 -11.39577 -11.07111 -11.01147 -10.79970 -9.79242 -9.45889
-8.84282 -8.35665 -6.40309 0.07648 0.13208 1.25478 1.26160 1.36259
1.44917 1.57393 1.82651 2.01137 2.27543 2.54031 2.62403 2.86477
3.00144 3.32102 3.44785 3.78518 3.86135 4.11818 4.18224 4.28256
4.32435 4.38349 4.44020 4.52486 4.55809 4.69293 4.71844 4.84488
4.94764 4.97420 5.03615 5.08229 5.15008 5.21669 5.38793 5.48620
5.63893 5.68905 5.88987 6.27228 6.29771 6.58949 6.61174 6.90303
7.23147 7.47622 8.80280
Molecular weight = 320.13amu
Principal moments of inertia in cm(-1)
A = 0.012776 B = 0.003790 C = 0.003091
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2191.145674 B = 7386.659443 C = 9055.830890
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.243 4.243
3 C 0.165 3.835
4 O -0.322 6.322
5 C 0.099 3.901
6 C -0.145 4.145
7 C -0.116 4.116
8 C 0.064 3.936
9 F -0.149 7.149
10 C -0.146 4.146
11 C 0.151 3.849
12 N -0.669 5.669
13 C 0.695 3.305
14 O -0.622 6.622
15 N -0.604 5.604
16 C 0.081 3.919
17 C 0.248 3.752
18 H 0.033 0.967
19 C -0.152 4.152
20 C -0.527 4.527
21 H 0.046 0.954
22 C 0.025 3.975
23 N -0.938 5.938
24 Si 0.940 3.060
25 H -0.251 1.251
26 H -0.296 1.296
27 H -0.263 1.263
28 H 0.252 0.748
29 H 0.109 0.891
30 H 0.115 0.885
31 H 0.189 0.811
32 H 0.175 0.825
33 H 0.124 0.876
34 H 0.420 0.580
35 H 0.075 0.925
36 H 0.077 0.923
37 H 0.073 0.927
38 H 0.071 0.929
39 H 0.044 0.956
40 H 0.054 0.946
41 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.726 -18.463 -20.388 28.316
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.243 4.243
3 C 0.092 3.908
4 O -0.237 6.237
5 C 0.051 3.949
6 C -0.164 4.164
7 C -0.135 4.135
8 C 0.044 3.956
9 F -0.128 7.128
10 C -0.168 4.168
11 C 0.055 3.945
12 N -0.319 5.319
13 C 0.397 3.603
14 O -0.503 6.503
15 N -0.338 5.338
16 C -0.062 4.062
17 C 0.145 3.855
18 H 0.051 0.949
19 C -0.210 4.210
20 C -0.566 4.566
21 H 0.065 0.935
22 C -0.174 4.174
23 N -0.578 5.578
24 Si 0.767 3.233
25 H -0.177 1.177
26 H -0.223 1.223
27 H -0.188 1.188
28 H 0.268 0.732
29 H 0.126 0.874
30 H 0.132 0.868
31 H 0.206 0.794
32 H 0.192 0.808
33 H 0.142 0.858
34 H 0.261 0.739
35 H 0.093 0.907
36 H 0.095 0.905
37 H 0.092 0.908
38 H 0.090 0.910
39 H 0.062 0.938
40 H 0.073 0.927
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -6.129 -17.863 -20.269 27.704
hybrid contribution 0.232 0.917 0.700 1.176
sum -5.898 -16.946 -19.570 26.550
Atomic orbital electron populations
1.25895 0.96881 0.97187 0.96556 1.22770 0.94508 1.03337 1.03653
1.19657 0.84724 0.94907 0.91555 1.86075 1.17979 1.63877 1.55774
1.18606 0.83217 0.98480 0.94555 1.21303 0.92117 1.01879 1.01106
1.21229 0.96241 0.98488 0.97578 1.17606 0.76802 1.01183 0.99966
1.91463 1.30465 1.95291 1.95581 1.21039 0.92295 1.01333 1.02158
1.16676 0.88659 0.96023 0.93124 1.42426 1.24245 1.14205 1.51061
1.16066 0.83942 0.80899 0.79374 1.90835 1.23287 1.72810 1.63346
1.47101 1.16835 1.16806 1.53053 1.21811 0.83293 0.98758 1.02306
1.18905 0.95034 0.78626 0.92976 0.94917 1.22309 1.01018 0.98129
0.99568 1.21356 1.46846 0.97899 0.90479 0.93545 1.25608 0.94509
1.01652 0.95610 1.69990 1.49987 1.28721 1.09061 0.85996 0.78766
0.79748 0.78784 1.17672 1.22315 1.18802 0.73203 0.87362 0.86770
0.79365 0.80807 0.85825 0.73937 0.90655 0.90474 0.90822 0.90974
0.93776 0.92742 0.92206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.80 19.25 74.32 1.43 -0.37 16
2 C -0.24 -3.63 13.73 31.13 0.43 -3.21 16
3 C 0.16 1.96 5.21 70.18 0.37 2.32 16
4 O -0.32 -6.40 9.66 -93.87 -0.91 -7.30 16
5 C 0.10 2.17 6.70 22.58 0.15 2.32 16
6 C -0.15 -2.16 9.03 22.34 0.20 -1.96 16
7 C -0.12 -2.07 10.02 22.33 0.22 -1.84 16
8 C 0.06 1.77 7.29 22.36 0.16 1.94 16
9 F -0.15 -4.46 17.26 44.97 0.78 -3.69 16
10 C -0.15 -4.96 8.67 22.42 0.19 -4.77 16
11 C 0.15 4.61 6.32 38.17 0.24 4.86 16
12 N -0.67 -22.00 5.07 -316.82 -1.61 -23.61 16
13 C 0.70 29.48 8.13 179.06 1.46 30.94 16
14 O -0.62 -31.29 13.09 -4.01 -0.05 -31.34 16
15 N -0.60 -25.37 2.75 -844.84 -2.33 -27.69 16
16 C 0.08 2.56 9.24 127.77 1.18 3.74 16
17 C 0.25 12.20 2.23 44.25 0.10 12.30 16
18 H 0.03 1.83 5.95 -2.39 -0.01 1.81 16
19 C -0.15 -6.39 8.67 71.98 0.62 -5.76 16
20 C -0.53 -29.93 8.57 25.60 0.22 -29.71 16
21 H 0.05 2.87 7.58 -2.91 -0.02 2.85 16
22 C 0.03 1.46 5.45 84.66 0.46 1.92 16
23 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16
24 Si 0.94 45.53 24.37 68.60 1.67 47.20 16
25 H -0.25 -11.09 6.87 99.48 0.68 -10.41 16
26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16
27 H -0.26 -12.70 6.53 99.48 0.65 -12.05 16
28 H 0.25 1.09 7.80 -4.41 -0.03 1.06 16
29 H 0.11 0.82 7.66 -2.39 -0.02 0.80 16
30 H 0.11 0.72 7.66 -2.39 -0.02 0.70 16
31 H 0.19 0.98 6.29 -2.91 -0.02 0.96 16
32 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16
33 H 0.12 5.18 6.19 -2.91 -0.02 5.16 16
34 H 0.42 11.44 6.27 -92.71 -0.58 10.86 16
35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
36 H 0.08 1.99 6.30 -2.39 -0.02 1.97 16
37 H 0.07 2.62 7.02 -2.39 -0.02 2.60 16
38 H 0.07 2.76 7.67 -2.38 -0.02 2.74 16
39 H 0.04 1.90 3.27 -2.39 -0.01 1.90 16
40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16
Total: -1.00 -79.10 347.51 5.72 -73.38
By element:
Atomic # 1 Polarization: 17.50 SS G_CDS: 0.42 Total: 17.93 kcal
Atomic # 6 Polarization: 5.28 SS G_CDS: 7.44 Total: 12.72 kcal
Atomic # 7 Polarization: -105.27 SS G_CDS: -3.63 Total: -108.90 kcal
Atomic # 8 Polarization: -37.69 SS G_CDS: -0.96 Total: -38.64 kcal
Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.69 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal
Total: -79.10 5.72 -73.38 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000120562064.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.540 kcal
(2) G-P(sol) polarization free energy of solvation -79.100 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.839 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds