Wall clock time and date at job start Tue Mar 31 2020 12:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47557 * 2 1 4 4 O 1.42901 * 109.47483 * 239.99316 * 2 1 3 5 5 C 1.35897 * 116.99266 * 85.69341 * 4 2 1 6 6 C 1.38763 * 120.04782 * 354.85291 * 5 4 2 7 7 C 1.38134 * 119.99692 * 179.97438 * 6 5 4 8 8 C 1.38252 * 120.07809 * 0.02562 * 7 6 5 9 9 C 1.38476 * 120.08788 * 359.97438 * 8 7 6 10 10 F 1.35098 * 120.00008 * 180.27424 * 9 8 7 11 11 C 1.38380 * 120.00465 * 359.97438 * 9 8 7 12 12 C 1.50706 * 109.46671 * 119.99912 * 2 1 3 13 13 O 1.21280 * 119.99886 * 105.52887 * 12 2 1 14 14 N 1.34776 * 119.99996 * 285.52053 * 12 2 1 15 15 C 1.46503 * 119.99886 * 5.02452 * 14 12 2 16 16 C 1.50698 * 109.46774 * 95.56889 * 15 14 12 17 17 H 1.07997 * 120.00562 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99811 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99808 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99739 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47117 * 90.00429 * 20 18 16 22 22 H 1.48507 * 109.46909 * 209.99750 * 20 18 16 23 23 H 1.48500 * 109.47570 * 329.99748 * 20 18 16 24 24 C 1.46499 * 120.00086 * 185.02728 * 14 12 2 25 25 C 1.52996 * 109.47440 * 94.22021 * 24 14 12 26 26 C 1.47200 * 109.47252 * 184.89677 * 25 24 14 27 27 N 6.96551 * 120.74943 * 104.72618 * 2 1 3 28 28 H 1.09006 * 109.47580 * 185.58682 * 1 2 3 29 29 H 1.09000 * 109.47332 * 305.58963 * 1 2 3 30 30 H 1.09000 * 109.47018 * 65.59338 * 1 2 3 31 31 H 1.08002 * 120.00186 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.95962 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.95733 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.04266 * 179.97438 * 11 9 8 35 35 H 1.08994 * 109.47222 * 215.56953 * 15 14 12 36 36 H 1.08997 * 109.46878 * 335.57194 * 15 14 12 37 37 H 0.97003 * 119.99614 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.46959 * 214.22213 * 24 14 12 39 39 H 1.08997 * 109.47152 * 334.21584 * 24 14 12 40 40 H 1.09003 * 109.47249 * 304.90038 * 25 24 14 41 41 H 1.08999 * 109.47156 * 64.89746 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1263 0.0659 -2.3004 6 6 1.6924 1.3839 -2.3193 7 6 1.8153 2.1349 -3.4720 8 6 2.3698 1.5750 -4.6080 9 6 2.8038 0.2601 -4.5929 10 9 3.3504 -0.2836 -5.7023 11 6 2.6834 -0.4952 -3.4397 12 6 2.0322 -0.7104 1.2306 13 8 2.4994 -1.8258 1.1385 14 7 1.9623 -0.1062 2.4332 15 6 1.2992 1.1938 2.5624 16 6 -0.1288 0.9881 2.9980 17 1 -0.5046 -0.0109 3.1626 18 6 -0.9552 2.0755 3.1874 19 7 -2.2011 1.8960 3.5681 20 14 -0.3049 3.8034 2.9035 21 1 -0.5319 4.1914 1.4881 22 1 -1.0158 4.7529 3.7971 23 1 1.1499 3.8398 3.1995 24 6 2.5495 -0.7492 3.6113 25 6 3.9725 -0.2279 3.8209 26 6 4.6040 -0.9581 4.9321 27 7 5.0913 -1.5217 5.7896 28 1 -0.3634 -1.0228 0.1000 29 1 -0.3634 0.5981 0.8357 30 1 -0.3633 0.4246 -0.9358 31 1 1.2595 1.8226 -1.4324 32 1 1.4778 3.1608 -3.4859 33 1 2.4653 2.1641 -5.5082 34 1 3.0213 -1.5209 -3.4274 35 1 1.8223 1.7963 3.3049 36 1 1.3154 1.7070 1.6010 37 1 -2.7826 2.6610 3.7010 38 1 1.9456 -0.5200 4.4892 39 1 2.5764 -1.8284 3.4607 40 1 4.5526 -0.3790 2.9105 41 1 3.9387 0.8355 4.0577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123956187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:19 Heat of formation + Delta-G solvation = -59.276303 kcal Electronic energy + Delta-G solvation = -26623.571102 eV Core-core repulsion = 22612.050180 eV Total energy + Delta-G solvation = -4011.520923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -49.03148 -40.60147 -39.30553 -37.29303 -36.67238 -35.51065 -33.17622 -32.33166 -31.12638 -30.21872 -29.67166 -28.13511 -25.12886 -23.64881 -23.10239 -22.82996 -21.77196 -18.95875 -18.55603 -17.70261 -17.17767 -16.93444 -16.52754 -16.37153 -15.86060 -15.78646 -15.47589 -15.22667 -14.78357 -14.66546 -14.18246 -14.06598 -13.83954 -13.36106 -13.33179 -12.97103 -12.78574 -12.55144 -12.48884 -12.27758 -12.17788 -11.93929 -11.80208 -11.65186 -11.41693 -11.17847 -11.00050 -10.89960 -10.81989 -10.75126 -10.47029 -9.83087 -9.35082 -9.00422 -8.91620 -8.34462 -8.15173 -6.41799 -4.45141 1.01321 1.18782 2.58485 2.84086 2.85295 2.96017 3.00607 3.08050 3.13697 3.48652 3.63356 4.06864 4.18195 4.30116 4.61893 4.79648 4.81673 4.86484 4.89528 5.04376 5.13152 5.18232 5.21606 5.28125 5.32201 5.50648 5.82968 5.87691 5.95534 6.01400 6.09350 6.10827 6.14760 6.21208 6.23560 6.34898 6.59810 6.84062 6.93268 7.19089 7.32773 7.61177 7.73618 8.15190 8.50199 8.66113 9.14537 10.69660 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.004343 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.640842 B = 6445.941617 C = 8434.623627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.072 3.928 3 H 0.097 0.903 4 O -0.286 6.286 5 C 0.170 3.830 6 C -0.222 4.222 7 C -0.049 4.049 8 C -0.199 4.199 9 C 0.136 3.864 10 F -0.137 7.137 11 C -0.193 4.193 12 C 0.527 3.473 13 O -0.539 6.539 14 N -0.586 5.586 15 C 0.201 3.799 16 C -0.548 4.548 17 H 0.084 0.916 18 C 0.081 3.919 19 N -0.880 5.880 20 Si 0.864 3.136 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.262 1.262 24 C 0.125 3.875 25 C -0.046 4.046 26 C 0.219 3.781 27 N -0.445 5.445 28 H 0.066 0.934 29 H 0.130 0.870 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.269 0.731 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 3.892 -11.457 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.013 3.987 3 H 0.114 0.886 4 O -0.198 6.198 5 C 0.123 3.877 6 C -0.241 4.241 7 C -0.067 4.067 8 C -0.218 4.218 9 C 0.116 3.884 10 F -0.116 7.116 11 C -0.212 4.212 12 C 0.313 3.687 13 O -0.416 6.416 14 N -0.317 5.317 15 C 0.080 3.920 16 C -0.586 4.586 17 H 0.102 0.898 18 C -0.125 4.125 19 N -0.516 5.516 20 Si 0.690 3.310 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.186 1.186 24 C 0.000 4.000 25 C -0.087 4.087 26 C -0.099 4.099 27 N -0.122 5.122 28 H 0.085 0.915 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.154 2.329 -10.159 13.234 hybrid contribution -0.131 1.421 -0.581 1.541 sum 8.023 3.751 -10.740 13.921 Atomic orbital electron populations 1.22696 0.90949 1.05375 1.05825 1.22363 0.97271 0.96246 0.82784 0.88574 1.86181 1.80315 1.37113 1.16148 1.18687 0.92585 0.89799 0.86619 1.21519 1.07408 0.94240 1.00926 1.20795 0.95070 0.99669 0.91158 1.21001 1.05915 0.94188 1.00683 1.17262 0.96696 0.91933 0.82479 1.91501 1.83217 1.86201 1.50679 1.20251 1.07764 1.02289 0.90901 1.19876 0.78482 0.86025 0.84290 1.90678 1.46212 1.18699 1.86055 1.47711 1.55366 1.22671 1.05978 1.20025 0.94243 0.79976 0.97768 1.21291 0.93266 0.96011 1.47986 0.89786 1.24879 0.94633 0.98847 0.94096 1.69874 1.05682 1.31535 1.44545 0.87032 0.79918 0.84924 0.79090 1.19613 1.20693 1.18625 1.21178 0.90399 0.98850 0.89552 1.19756 0.96989 0.99646 0.92298 1.29001 0.93371 0.93474 0.94034 1.81193 1.09748 1.09845 1.11431 0.91464 0.85161 0.91922 0.84119 0.84652 0.84827 0.83904 0.94190 0.95040 0.92036 0.88560 0.89307 0.87402 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.88 37.15 0.33 -2.76 16 2 C 0.07 1.13 1.80 -27.88 -0.05 1.08 16 3 H 0.10 1.31 4.92 -51.93 -0.26 1.05 16 4 O -0.29 -4.63 9.37 -38.90 -0.36 -4.99 16 5 C 0.17 2.36 6.59 -39.22 -0.26 2.10 16 6 C -0.22 -2.67 8.26 -39.43 -0.33 -2.99 16 7 C -0.05 -0.49 10.04 -39.61 -0.40 -0.89 16 8 C -0.20 -2.05 10.02 -39.49 -0.40 -2.44 16 9 C 0.14 1.62 7.30 -39.44 -0.29 1.33 16 10 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 11 C -0.19 -2.51 9.97 -39.36 -0.39 -2.90 16 12 C 0.53 9.27 7.00 -10.98 -0.08 9.19 16 13 O -0.54 -10.93 16.06 -13.93 -0.22 -11.15 16 14 N -0.59 -9.59 2.46 -175.07 -0.43 -10.02 16 15 C 0.20 3.50 3.76 -5.19 -0.02 3.48 16 16 C -0.55 -12.03 7.56 -34.44 -0.26 -12.29 16 17 H 0.08 2.13 8.06 -52.49 -0.42 1.70 16 18 C 0.08 1.88 5.47 -17.82 -0.10 1.79 16 19 N -0.88 -22.84 13.96 55.43 0.77 -22.07 16 20 Si 0.86 16.93 27.47 -169.99 -4.67 12.26 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -4.71 6.54 56.52 0.37 -4.34 16 24 C 0.13 1.79 5.46 -4.04 -0.02 1.77 16 25 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 26 C 0.22 2.91 15.43 -20.76 -0.32 2.59 16 27 N -0.44 -7.05 18.54 42.15 0.78 -6.27 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.13 2.38 4.46 -51.93 -0.23 2.15 16 30 H 0.06 0.89 7.10 -51.93 -0.37 0.52 16 31 H 0.14 1.60 5.54 -52.49 -0.29 1.31 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.04 0.66 7.17 -51.93 -0.37 0.29 16 36 H 0.03 0.51 4.96 -51.93 -0.26 0.26 16 37 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 38 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.09 1.36 7.24 -51.93 -0.38 0.98 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 353.87 15.07 5.33 5.33 Total: -1.00 -28.22 353.87 -6.21 -34.43 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.70 Total: 5.72 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.75 Total: -1.61 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 1.12 Total: -38.36 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.59 Total: -16.14 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -4.67 Total: 12.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.22 -6.21 -34.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123956187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.848 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds