Wall clock time and date at job start Tue Mar 31 2020 12:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47557 * 2 1 4 4 O 1.42901 * 109.47483 * 239.99316 * 2 1 3 5 5 C 1.35897 * 116.99266 * 85.69341 * 4 2 1 6 6 C 1.38763 * 120.04782 * 354.85291 * 5 4 2 7 7 C 1.38134 * 119.99692 * 179.97438 * 6 5 4 8 8 C 1.38252 * 120.07809 * 0.02562 * 7 6 5 9 9 C 1.38476 * 120.08788 * 359.97438 * 8 7 6 10 10 F 1.35098 * 120.00008 * 180.27424 * 9 8 7 11 11 C 1.38380 * 120.00465 * 359.97438 * 9 8 7 12 12 C 1.50706 * 109.46671 * 119.99912 * 2 1 3 13 13 O 1.21280 * 119.99886 * 105.52887 * 12 2 1 14 14 N 1.34776 * 119.99996 * 285.52053 * 12 2 1 15 15 C 1.46503 * 119.99886 * 5.02452 * 14 12 2 16 16 C 1.50698 * 109.46774 * 95.56889 * 15 14 12 17 17 H 1.07997 * 120.00562 * 0.02562 * 16 15 14 18 18 C 1.37886 * 119.99811 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99808 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99739 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47117 * 90.00429 * 20 18 16 22 22 H 1.48507 * 109.46909 * 209.99750 * 20 18 16 23 23 H 1.48500 * 109.47570 * 329.99748 * 20 18 16 24 24 C 1.46499 * 120.00086 * 185.02728 * 14 12 2 25 25 C 1.52996 * 109.47440 * 94.22021 * 24 14 12 26 26 C 1.47200 * 109.47252 * 184.89677 * 25 24 14 27 27 N 6.96551 * 120.74943 * 104.72618 * 2 1 3 28 28 H 1.09006 * 109.47580 * 185.58682 * 1 2 3 29 29 H 1.09000 * 109.47332 * 305.58963 * 1 2 3 30 30 H 1.09000 * 109.47018 * 65.59338 * 1 2 3 31 31 H 1.08002 * 120.00186 * 0.02562 * 6 5 4 32 32 H 1.08003 * 119.95962 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.95733 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.04266 * 179.97438 * 11 9 8 35 35 H 1.08994 * 109.47222 * 215.56953 * 15 14 12 36 36 H 1.08997 * 109.46878 * 335.57194 * 15 14 12 37 37 H 0.97003 * 119.99614 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.46959 * 214.22213 * 24 14 12 39 39 H 1.08997 * 109.47152 * 334.21584 * 24 14 12 40 40 H 1.09003 * 109.47249 * 304.90038 * 25 24 14 41 41 H 1.08999 * 109.47156 * 64.89746 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1263 0.0659 -2.3004 6 6 1.6924 1.3839 -2.3193 7 6 1.8153 2.1349 -3.4720 8 6 2.3698 1.5750 -4.6080 9 6 2.8038 0.2601 -4.5929 10 9 3.3504 -0.2836 -5.7023 11 6 2.6834 -0.4952 -3.4397 12 6 2.0322 -0.7104 1.2306 13 8 2.4994 -1.8258 1.1385 14 7 1.9623 -0.1062 2.4332 15 6 1.2992 1.1938 2.5624 16 6 -0.1288 0.9881 2.9980 17 1 -0.5046 -0.0109 3.1626 18 6 -0.9552 2.0755 3.1874 19 7 -2.2011 1.8960 3.5681 20 14 -0.3049 3.8034 2.9035 21 1 -0.5319 4.1914 1.4881 22 1 -1.0158 4.7529 3.7971 23 1 1.1499 3.8398 3.1995 24 6 2.5495 -0.7492 3.6113 25 6 3.9725 -0.2279 3.8209 26 6 4.6040 -0.9581 4.9321 27 7 5.0913 -1.5217 5.7896 28 1 -0.3634 -1.0228 0.1000 29 1 -0.3634 0.5981 0.8357 30 1 -0.3633 0.4246 -0.9358 31 1 1.2595 1.8226 -1.4324 32 1 1.4778 3.1608 -3.4859 33 1 2.4653 2.1641 -5.5082 34 1 3.0213 -1.5209 -3.4274 35 1 1.8223 1.7963 3.3049 36 1 1.3154 1.7070 1.6010 37 1 -2.7826 2.6610 3.7010 38 1 1.9456 -0.5200 4.4892 39 1 2.5764 -1.8284 3.4607 40 1 4.5526 -0.3790 2.9105 41 1 3.9387 0.8355 4.0577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123956187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:18 Heat of formation + Delta-G solvation = -73.819612 kcal Electronic energy + Delta-G solvation = -26624.201747 eV Core-core repulsion = 22612.050180 eV Total energy + Delta-G solvation = -4012.151568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.94640 -41.77426 -40.49468 -38.32376 -37.82929 -36.92070 -34.70477 -33.68080 -32.19290 -31.23951 -30.64440 -29.70106 -26.36847 -24.82972 -24.42829 -23.90612 -22.83387 -20.18696 -19.68053 -19.05032 -18.50416 -18.24006 -17.64665 -17.30751 -16.93004 -16.77865 -16.59752 -16.42213 -16.10341 -15.84033 -15.42181 -15.28991 -14.70533 -14.67099 -14.53453 -14.32295 -14.10859 -13.70936 -13.65315 -13.42869 -13.34750 -13.21381 -12.92982 -12.84231 -12.62206 -12.45534 -12.37962 -12.04443 -11.99319 -11.91105 -11.78886 -11.56240 -10.77352 -10.61407 -9.90127 -9.56484 -9.29868 -8.18763 -6.25847 0.12297 0.29854 1.41250 1.51469 1.53573 1.56442 1.63614 1.79106 1.79479 2.45423 2.46449 2.60361 3.13645 3.16709 3.36880 3.46389 3.71147 3.84461 3.98954 4.03383 4.10308 4.12339 4.13588 4.28709 4.43791 4.54732 4.70287 4.72878 4.85691 4.87496 4.92888 5.02672 5.05584 5.10983 5.25619 5.37349 5.42773 5.51744 5.60669 5.74624 6.19160 6.29080 6.54221 6.55860 6.81368 7.14313 7.38488 8.96550 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.004343 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.640842 B = 6445.941617 C = 8434.623627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 H 0.125 0.875 4 O -0.308 6.308 5 C 0.145 3.855 6 C -0.224 4.224 7 C -0.040 4.040 8 C -0.188 4.188 9 C 0.125 3.875 10 F -0.142 7.142 11 C -0.207 4.207 12 C 0.521 3.479 13 O -0.573 6.573 14 N -0.582 5.582 15 C 0.203 3.797 16 C -0.534 4.534 17 H 0.034 0.966 18 C 0.024 3.976 19 N -0.942 5.942 20 Si 0.926 3.074 21 H -0.255 1.255 22 H -0.300 1.300 23 H -0.223 1.223 24 C 0.120 3.880 25 C -0.030 4.030 26 C 0.243 3.757 27 N -0.492 5.492 28 H 0.044 0.956 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 7.227 -13.192 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.019 3.981 3 H 0.142 0.858 4 O -0.221 6.221 5 C 0.099 3.901 6 C -0.242 4.242 7 C -0.058 4.058 8 C -0.207 4.207 9 C 0.106 3.894 10 F -0.120 7.120 11 C -0.226 4.226 12 C 0.309 3.691 13 O -0.452 6.452 14 N -0.312 5.312 15 C 0.082 3.918 16 C -0.572 4.572 17 H 0.052 0.948 18 C -0.175 4.175 19 N -0.581 5.581 20 Si 0.748 3.252 21 H -0.179 1.179 22 H -0.227 1.227 23 H -0.146 1.146 24 C -0.004 4.004 25 C -0.071 4.071 26 C -0.074 4.074 27 N -0.170 5.170 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.167 0.833 32 H 0.189 0.811 33 H 0.179 0.821 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.141 0.859 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.912 5.657 -11.905 16.491 hybrid contribution -0.725 0.279 -0.115 0.785 sum 9.187 5.936 -12.020 16.251 Atomic orbital electron populations 1.22542 0.91724 1.03705 1.05959 1.22284 0.96411 0.97267 0.82138 0.85762 1.86149 1.80918 1.38212 1.16859 1.18878 0.94341 0.90820 0.86029 1.21696 1.07020 0.93397 1.02106 1.21198 0.93700 1.00941 0.89984 1.21368 1.04097 0.93332 1.01857 1.17429 0.97259 0.92729 0.82023 1.91491 1.83366 1.86431 1.50726 1.20320 1.08386 1.02407 0.91518 1.20316 0.77934 0.85713 0.85176 1.90659 1.47842 1.20134 1.86608 1.47709 1.54893 1.22419 1.06204 1.20012 0.91541 0.80747 0.99526 1.21398 0.95621 0.93657 1.46570 0.94807 1.25731 0.94449 1.03486 0.93879 1.70061 1.07770 1.32637 1.47601 0.86044 0.81140 0.78648 0.79341 1.17926 1.22665 1.14572 1.21229 0.92380 0.98121 0.88699 1.19749 0.94462 1.00819 0.92094 1.29277 0.92279 0.92377 0.93466 1.81222 1.11339 1.11331 1.13097 0.93673 0.87114 0.89848 0.83252 0.81137 0.82108 0.84647 0.91502 0.92467 0.92497 0.88958 0.90983 0.85940 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.80 8.88 71.98 0.64 -5.16 16 2 C 0.08 2.33 1.80 29.85 0.05 2.39 16 3 H 0.13 2.96 4.92 -2.39 -0.01 2.95 16 4 O -0.31 -9.83 9.37 -73.76 -0.69 -10.52 16 5 C 0.15 3.82 6.59 22.50 0.15 3.97 16 6 C -0.22 -4.62 8.26 22.37 0.18 -4.44 16 7 C -0.04 -0.64 10.04 22.25 0.22 -0.41 16 8 C -0.19 -3.16 10.02 22.33 0.22 -2.94 16 9 C 0.12 2.75 7.30 22.36 0.16 2.92 16 10 F -0.14 -3.24 17.27 44.97 0.78 -2.46 16 11 C -0.21 -5.25 9.97 22.41 0.22 -5.02 16 12 C 0.52 18.02 7.00 87.66 0.61 18.63 16 13 O -0.57 -23.50 16.06 15.60 0.25 -23.25 16 14 N -0.58 -18.22 2.46 -826.18 -2.03 -20.25 16 15 C 0.20 6.51 3.76 85.63 0.32 6.83 16 16 C -0.53 -23.40 7.56 25.60 0.19 -23.20 16 17 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 18 C 0.02 1.11 5.47 84.66 0.46 1.57 16 19 N -0.94 -50.35 13.96 21.45 0.30 -50.05 16 20 Si 0.93 32.66 27.47 68.60 1.88 34.55 16 21 H -0.25 -8.33 7.11 99.48 0.71 -7.63 16 22 H -0.30 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.22 -6.47 6.54 99.48 0.65 -5.82 16 24 C 0.12 3.33 5.46 86.38 0.47 3.80 16 25 C -0.03 -0.60 6.03 28.79 0.17 -0.43 16 26 C 0.24 6.09 15.43 89.44 1.38 7.47 16 27 N -0.49 -15.29 18.54 20.01 0.37 -14.92 16 28 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.11 4.00 4.46 -2.39 -0.01 3.99 16 30 H 0.08 2.26 7.10 -2.39 -0.02 2.24 16 31 H 0.15 2.78 5.54 -2.91 -0.02 2.76 16 32 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.07 1.87 7.17 -2.39 -0.02 1.86 16 36 H 0.06 1.60 4.96 -2.39 -0.01 1.59 16 37 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 38 H 0.09 2.62 8.10 -2.39 -0.02 2.60 16 39 H 0.07 2.24 7.24 -2.39 -0.02 2.23 16 40 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -65.33 353.87 7.36 -57.97 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.02 Total: 22.96 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 5.48 Total: 5.98 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -1.36 Total: -85.22 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.44 Total: -33.77 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 32.66 SS G_CDS: 1.88 Total: 34.55 kcal Total: -65.33 7.36 -57.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123956187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.850 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds