Wall clock time and date at job start Tue Mar 31 2020 12:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47326 * 2 1 4 4 C 1.46892 * 111.00064 * 287.96962 * 3 2 1 5 5 C 1.50704 * 109.47362 * 296.15220 * 4 3 2 6 6 H 1.07999 * 119.99538 * 4.35225 * 5 4 3 7 7 C 1.37876 * 119.99912 * 184.35222 * 5 4 3 8 8 N 1.31519 * 120.00336 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47389 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47407 * 119.99625 * 9 7 5 12 12 H 1.48503 * 109.47043 * 239.99625 * 9 7 5 13 13 C 1.46904 * 110.99850 * 164.01679 * 3 2 1 14 14 N 1.46498 * 109.47193 * 278.95397 * 13 3 2 15 15 C 1.34430 * 124.29323 * 89.97757 * 14 13 3 16 16 O 1.21308 * 126.24345 * 359.97438 * 15 14 13 17 17 C 1.49980 * 107.50893 * 180.02562 * 15 14 13 18 18 O 1.21358 * 127.57977 * 179.97438 * 17 15 14 19 19 C 1.47480 * 104.84090 * 359.97438 * 17 15 14 20 20 C 1.39537 * 133.03487 * 180.02562 * 19 17 15 21 21 C 1.37979 * 119.74492 * 180.02562 * 20 19 17 22 22 C 1.50701 * 119.95419 * 179.97438 * 21 20 19 23 23 C 1.38505 * 120.09210 * 0.02562 * 21 20 19 24 24 C 1.38422 * 120.65483 * 359.97438 * 23 21 20 25 25 F 1.35099 * 119.91625 * 179.97438 * 24 23 21 26 26 C 1.39067 * 120.16458 * 0.02562 * 24 23 21 27 27 H 1.08993 * 109.47271 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46937 * 300.06071 * 1 2 3 29 29 H 1.09000 * 109.46884 * 60.05849 * 1 2 3 30 30 H 1.09004 * 109.47258 * 239.99933 * 2 1 3 31 31 H 1.08997 * 109.47106 * 120.00378 * 2 1 3 32 32 H 1.09001 * 109.47023 * 56.15469 * 4 3 2 33 33 H 1.09004 * 109.47256 * 176.15223 * 4 3 2 34 34 H 0.96998 * 120.00009 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46895 * 158.95488 * 13 3 2 36 36 H 1.08999 * 109.47639 * 38.95607 * 13 3 2 37 37 H 1.07997 * 120.12384 * 0.02562 * 20 19 17 38 38 H 1.08996 * 109.47203 * 270.02092 * 22 21 20 39 39 H 1.08998 * 109.47152 * 30.02563 * 22 21 20 40 40 H 1.09004 * 109.46980 * 150.02018 * 22 21 20 41 41 H 1.08002 * 119.67372 * 179.71951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7963 2.0223 -1.3045 5 6 2.6035 1.3078 -2.3576 6 1 3.1652 0.4224 -2.0989 7 6 2.6248 1.7844 -3.6511 8 7 1.9403 2.8623 -3.9662 9 14 3.6247 0.8982 -4.9566 10 1 4.2979 -0.2785 -4.3506 11 1 2.7246 0.4464 -6.0478 12 1 4.6472 1.8227 -5.5092 13 6 3.4382 1.4417 0.3776 14 7 3.5585 1.3719 1.8360 15 6 3.6800 0.2283 2.5321 16 8 3.7075 -0.8930 2.0702 17 6 3.7741 0.5918 3.9842 18 8 3.8922 -0.1603 4.9292 19 6 3.6916 2.0640 4.0112 20 6 3.7201 3.0006 5.0452 21 6 3.6190 4.3454 4.7537 22 6 3.6486 5.3609 5.8668 23 6 3.4891 4.7633 3.4396 24 6 3.4597 3.8431 2.4060 25 9 3.3321 4.2672 1.1296 26 6 3.5602 2.4830 2.6782 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5148 0.8894 29 1 -0.3633 0.5129 -0.8905 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.7378 1.9679 -1.5589 33 1 2.1052 3.0666 -1.2563 34 1 1.9550 3.1974 -4.8764 35 1 3.8718 2.3763 0.0216 36 1 3.9677 0.6013 -0.0712 37 1 3.8209 2.6740 6.0696 38 1 2.6331 5.5462 6.2167 39 1 4.2529 4.9800 6.6901 40 1 4.0814 6.2911 5.4985 41 1 3.4059 5.8174 3.2195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125311825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:43 Heat of formation + Delta-G solvation = -54.963353 kcal Electronic energy + Delta-G solvation = -27519.103714 eV Core-core repulsion = 23507.769815 eV Total energy + Delta-G solvation = -4011.333899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.79111 -41.85500 -38.88955 -38.59178 -37.04143 -36.13610 -32.66908 -31.89762 -31.25939 -29.97843 -28.13974 -26.80254 -26.23001 -24.02128 -23.07530 -22.40152 -21.62462 -20.28363 -19.79726 -17.82958 -17.49039 -16.78649 -16.65470 -16.40049 -15.78158 -15.55245 -15.40112 -15.20229 -15.00494 -14.74487 -14.30322 -13.84237 -13.69005 -13.60379 -13.54326 -13.26099 -12.52173 -12.38683 -12.29695 -12.27181 -12.12542 -11.97896 -11.87556 -11.39453 -11.23872 -11.00504 -10.85722 -10.67758 -10.35391 -10.11626 -10.02240 -9.68283 -9.53726 -9.20463 -8.52930 -8.08273 -7.46746 -6.13515 -4.23358 -0.16698 0.85240 1.49342 2.40119 2.90452 3.21330 3.26603 3.30263 3.33665 3.34207 3.99442 4.17955 4.33056 4.37952 4.42814 4.82452 4.85202 4.95298 5.18688 5.21513 5.32702 5.38805 5.54797 5.59303 5.62867 5.76870 5.80520 5.95706 6.04906 6.08324 6.10527 6.27674 6.41919 6.49848 6.69774 6.72136 6.81527 6.89433 7.10344 7.41564 7.58787 7.78733 7.88585 8.02358 8.14496 8.85734 9.44768 10.91900 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.004365 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.801818 B = 6412.878595 C = 7407.904430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 N -0.552 5.552 4 C 0.194 3.806 5 C -0.559 4.559 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.281 3.719 14 N -0.527 5.527 15 C 0.490 3.510 16 O -0.444 6.444 17 C 0.396 3.604 18 O -0.376 6.376 19 C -0.219 4.219 20 C -0.019 4.019 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.083 4.083 24 C 0.085 3.915 25 F -0.118 7.118 26 C 0.177 3.823 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 5.645 18.080 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 N -0.277 5.277 4 C 0.069 3.931 5 C -0.598 4.598 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.071 3.929 14 N -0.252 5.252 15 C 0.273 3.727 16 O -0.315 6.315 17 C 0.265 3.735 18 O -0.245 6.245 19 C -0.224 4.224 20 C -0.038 4.038 21 C -0.107 4.107 22 C -0.165 4.165 23 C -0.102 4.102 24 C 0.062 3.938 25 F -0.096 7.096 26 C 0.078 3.922 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.020 4.876 18.294 19.172 hybrid contribution 0.806 -0.746 -2.018 2.297 sum 3.826 4.130 16.276 17.222 Atomic orbital electron populations 1.21671 0.95752 1.00182 1.01959 1.22100 0.95630 0.89765 1.00621 1.62192 1.14326 1.17227 1.33969 1.19793 0.97584 0.94646 0.81115 1.21770 1.30539 1.12402 0.95041 0.92441 1.24925 0.95238 0.94732 0.98482 1.69944 1.40745 1.22089 1.19590 0.86595 0.80128 0.79844 0.81836 1.19764 1.20834 1.20842 1.22222 0.92876 1.04150 0.73639 1.46185 1.65776 1.04172 1.09035 1.20971 0.77720 0.84644 0.89341 1.90791 1.43607 1.20979 1.76080 1.22435 0.73087 0.88423 0.89524 1.90576 1.31952 1.60019 1.41977 1.20313 1.14010 0.95189 0.92860 1.20649 0.94002 0.90796 0.98337 1.19583 1.02794 0.94077 0.94197 1.20735 1.02831 0.97090 0.95810 1.21129 0.98222 0.99887 0.90985 1.16876 1.07526 0.88747 0.80602 1.91623 1.93311 1.89996 1.34714 1.18457 0.96115 0.88095 0.89581 0.93511 0.93380 0.91979 0.93071 0.92626 0.94394 0.94303 0.92700 0.87406 0.90624 0.84143 0.90733 0.91082 0.91060 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.96 37.16 0.37 -2.16 16 2 C 0.05 0.95 5.39 -3.83 -0.02 0.93 16 3 N -0.55 -11.56 4.76 -239.98 -1.14 -12.70 16 4 C 0.19 4.73 4.89 -4.98 -0.02 4.71 16 5 C -0.56 -14.68 7.62 -34.44 -0.26 -14.95 16 6 H 0.06 1.52 6.18 -52.49 -0.32 1.19 16 7 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 8 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 9 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.28 5.41 4.54 -63.31 -0.29 5.12 16 14 N -0.53 -8.85 2.95 -116.75 -0.34 -9.19 16 15 C 0.49 8.35 7.46 -11.49 -0.09 8.26 16 16 O -0.44 -8.69 15.98 5.53 0.09 -8.60 16 17 C 0.40 5.82 7.97 -30.89 -0.25 5.57 16 18 O -0.38 -5.94 18.03 5.49 0.10 -5.85 16 19 C -0.22 -2.75 6.33 -104.85 -0.66 -3.41 16 20 C -0.02 -0.18 9.76 -39.19 -0.38 -0.56 16 21 C -0.11 -0.86 5.88 -104.62 -0.62 -1.48 16 22 C -0.11 -0.55 10.01 36.01 0.36 -0.19 16 23 C -0.08 -0.80 9.65 -39.41 -0.38 -1.18 16 24 C 0.08 1.13 7.31 -39.21 -0.29 0.84 16 25 F -0.12 -1.90 15.42 2.25 0.03 -1.86 16 26 C 0.18 2.54 6.74 -83.31 -0.56 1.98 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.22 6.70 -51.93 -0.35 0.88 16 30 H 0.05 1.14 6.37 -51.93 -0.33 0.81 16 31 H 0.06 1.12 5.28 -51.93 -0.27 0.84 16 32 H 0.04 1.00 6.57 -51.93 -0.34 0.65 16 33 H 0.04 1.02 8.05 -51.93 -0.42 0.60 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.11 2.11 6.31 -51.93 -0.33 1.78 16 36 H 0.08 1.55 7.16 -51.93 -0.37 1.18 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 40 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -29.92 347.91 -8.32 -38.23 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.82 Total: -2.14 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -3.18 Total: 5.29 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.75 Total: -46.23 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.19 Total: -14.45 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.92 -8.32 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125311825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.729 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds