Wall clock time and date at job start Tue Mar 31 2020 12:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47326 * 2 1 4 4 C 1.46892 * 111.00064 * 287.96962 * 3 2 1 5 5 C 1.50704 * 109.47362 * 296.15220 * 4 3 2 6 6 H 1.07999 * 119.99538 * 4.35225 * 5 4 3 7 7 C 1.37876 * 119.99912 * 184.35222 * 5 4 3 8 8 N 1.31519 * 120.00336 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47389 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47407 * 119.99625 * 9 7 5 12 12 H 1.48503 * 109.47043 * 239.99625 * 9 7 5 13 13 C 1.46904 * 110.99850 * 164.01679 * 3 2 1 14 14 N 1.46498 * 109.47193 * 278.95397 * 13 3 2 15 15 C 1.34430 * 124.29323 * 89.97757 * 14 13 3 16 16 O 1.21308 * 126.24345 * 359.97438 * 15 14 13 17 17 C 1.49980 * 107.50893 * 180.02562 * 15 14 13 18 18 O 1.21358 * 127.57977 * 179.97438 * 17 15 14 19 19 C 1.47480 * 104.84090 * 359.97438 * 17 15 14 20 20 C 1.39537 * 133.03487 * 180.02562 * 19 17 15 21 21 C 1.37979 * 119.74492 * 180.02562 * 20 19 17 22 22 C 1.50701 * 119.95419 * 179.97438 * 21 20 19 23 23 C 1.38505 * 120.09210 * 0.02562 * 21 20 19 24 24 C 1.38422 * 120.65483 * 359.97438 * 23 21 20 25 25 F 1.35099 * 119.91625 * 179.97438 * 24 23 21 26 26 C 1.39067 * 120.16458 * 0.02562 * 24 23 21 27 27 H 1.08993 * 109.47271 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46937 * 300.06071 * 1 2 3 29 29 H 1.09000 * 109.46884 * 60.05849 * 1 2 3 30 30 H 1.09004 * 109.47258 * 239.99933 * 2 1 3 31 31 H 1.08997 * 109.47106 * 120.00378 * 2 1 3 32 32 H 1.09001 * 109.47023 * 56.15469 * 4 3 2 33 33 H 1.09004 * 109.47256 * 176.15223 * 4 3 2 34 34 H 0.96998 * 120.00009 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46895 * 158.95488 * 13 3 2 36 36 H 1.08999 * 109.47639 * 38.95607 * 13 3 2 37 37 H 1.07997 * 120.12384 * 0.02562 * 20 19 17 38 38 H 1.08996 * 109.47203 * 270.02092 * 22 21 20 39 39 H 1.08998 * 109.47152 * 30.02563 * 22 21 20 40 40 H 1.09004 * 109.46980 * 150.02018 * 22 21 20 41 41 H 1.08002 * 119.67372 * 179.71951 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7963 2.0223 -1.3045 5 6 2.6035 1.3078 -2.3576 6 1 3.1652 0.4224 -2.0989 7 6 2.6248 1.7844 -3.6511 8 7 1.9403 2.8623 -3.9662 9 14 3.6247 0.8982 -4.9566 10 1 4.2979 -0.2785 -4.3506 11 1 2.7246 0.4464 -6.0478 12 1 4.6472 1.8227 -5.5092 13 6 3.4382 1.4417 0.3776 14 7 3.5585 1.3719 1.8360 15 6 3.6800 0.2283 2.5321 16 8 3.7075 -0.8930 2.0702 17 6 3.7741 0.5918 3.9842 18 8 3.8922 -0.1603 4.9292 19 6 3.6916 2.0640 4.0112 20 6 3.7201 3.0006 5.0452 21 6 3.6190 4.3454 4.7537 22 6 3.6486 5.3609 5.8668 23 6 3.4891 4.7633 3.4396 24 6 3.4597 3.8431 2.4060 25 9 3.3321 4.2672 1.1296 26 6 3.5602 2.4830 2.6782 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5148 0.8894 29 1 -0.3633 0.5129 -0.8905 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.7378 1.9679 -1.5589 33 1 2.1052 3.0666 -1.2563 34 1 1.9550 3.1974 -4.8764 35 1 3.8718 2.3763 0.0216 36 1 3.9677 0.6013 -0.0712 37 1 3.8209 2.6740 6.0696 38 1 2.6331 5.5462 6.2167 39 1 4.2529 4.9800 6.6901 40 1 4.0814 6.2911 5.4985 41 1 3.4059 5.8174 3.2195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125311825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:38 Heat of formation + Delta-G solvation = -73.348157 kcal Electronic energy + Delta-G solvation = -27519.900939 eV Core-core repulsion = 23507.769815 eV Total energy + Delta-G solvation = -4012.131124 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.92140 -43.05802 -39.98713 -39.85463 -38.64019 -37.38704 -34.69610 -33.02425 -32.16773 -31.50258 -29.59547 -28.00114 -27.51508 -25.58327 -24.82291 -23.43308 -22.66343 -21.67228 -21.35807 -19.06787 -18.75362 -18.24462 -18.01559 -17.84694 -17.06612 -16.81262 -16.71239 -16.51211 -16.41641 -16.20080 -15.72148 -15.24773 -14.95906 -14.92010 -14.41909 -14.35396 -14.16684 -13.87548 -13.47998 -13.37012 -13.19560 -13.11151 -12.96356 -12.93631 -12.69293 -12.66714 -12.53141 -12.35487 -12.03929 -11.95424 -11.68121 -11.38581 -10.81312 -10.63364 -10.12476 -9.38481 -9.06399 -8.21744 -6.39625 -1.26841 -0.07480 0.47831 1.10596 1.33176 1.36139 1.46550 1.63312 2.19874 2.34036 2.39370 2.94827 3.06148 3.11540 3.17361 3.41791 3.64326 3.87753 4.07418 4.13411 4.16052 4.31860 4.44723 4.56023 4.58663 4.66852 4.77199 4.85124 4.86906 4.99474 5.02886 5.04828 5.12590 5.23911 5.28786 5.34367 5.40063 5.46645 5.58410 5.69910 5.78634 5.91829 6.09310 6.23319 6.33593 6.77874 7.32079 8.82450 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.004365 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.801818 B = 6412.878595 C = 7407.904430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 N -0.547 5.547 4 C 0.213 3.787 5 C -0.565 4.565 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.277 1.277 12 H -0.275 1.275 13 C 0.293 3.707 14 N -0.530 5.530 15 C 0.481 3.519 16 O -0.484 6.484 17 C 0.409 3.591 18 O -0.388 6.388 19 C -0.215 4.215 20 C -0.004 4.004 21 C -0.082 4.082 22 C -0.108 4.108 23 C -0.069 4.069 24 C 0.063 3.937 25 F -0.142 7.142 26 C 0.142 3.858 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.174 0.826 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 7.117 20.713 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.078 4.078 3 N -0.272 5.272 4 C 0.087 3.913 5 C -0.603 4.603 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.203 1.203 12 H -0.200 1.200 13 C 0.082 3.918 14 N -0.254 5.254 15 C 0.266 3.734 16 O -0.357 6.357 17 C 0.280 3.720 18 O -0.258 6.258 19 C -0.219 4.219 20 C -0.022 4.022 21 C -0.084 4.084 22 C -0.165 4.165 23 C -0.088 4.088 24 C 0.041 3.959 25 F -0.121 7.121 26 C 0.045 3.955 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.191 0.809 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.439 6.383 20.975 22.193 hybrid contribution 0.689 -1.064 -2.673 2.959 sum 4.128 5.319 18.302 19.501 Atomic orbital electron populations 1.21606 0.93982 1.01609 1.01520 1.22086 0.97088 0.88995 0.99593 1.62169 1.15558 1.17495 1.31960 1.19389 0.95913 0.93559 0.82481 1.21951 1.30463 1.12175 0.95750 0.93040 1.25664 0.96226 0.95399 1.00467 1.70040 1.41991 1.23324 1.20248 0.85610 0.78784 0.78707 0.79208 1.19749 1.20300 1.20048 1.21860 0.91494 1.02844 0.75573 1.45903 1.66067 1.05419 1.08027 1.21537 0.76944 0.84128 0.90791 1.90752 1.45665 1.22219 1.77028 1.22175 0.72595 0.89460 0.87773 1.90573 1.33032 1.60591 1.41624 1.20198 1.15050 0.93820 0.92824 1.21114 0.91616 0.90612 0.98893 1.20046 0.99461 0.94346 0.94500 1.20882 1.04220 0.96523 0.94845 1.21529 0.96108 1.00581 0.90586 1.17336 1.08997 0.89029 0.80560 1.91563 1.93742 1.90160 1.36593 1.18682 0.99074 0.87888 0.89851 0.91187 0.92347 0.93719 0.95420 0.92239 0.96378 0.96476 0.92405 0.88177 0.92493 0.80906 0.89317 0.89276 0.89598 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.96 71.98 0.72 -4.09 16 2 C 0.05 2.13 5.39 86.30 0.46 2.60 16 3 N -0.55 -24.02 4.76 -913.16 -4.35 -28.37 16 4 C 0.21 10.93 4.89 85.56 0.42 11.35 16 5 C -0.56 -30.81 7.62 25.60 0.20 -30.61 16 6 H 0.05 2.83 6.18 -2.91 -0.02 2.81 16 7 C 0.02 1.28 5.46 84.65 0.46 1.74 16 8 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 9 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.29 11.98 4.54 170.81 0.78 12.76 16 14 N -0.53 -18.50 2.95 -641.86 -1.90 -20.39 16 15 C 0.48 17.00 7.46 87.49 0.65 17.65 16 16 O -0.48 -19.87 15.98 -3.11 -0.05 -19.92 16 17 C 0.41 11.86 7.97 27.90 0.22 12.09 16 18 O -0.39 -11.94 18.03 -3.27 -0.06 -12.00 16 19 C -0.21 -5.04 6.33 -20.01 -0.13 -5.16 16 20 C 0.00 -0.06 9.76 22.52 0.22 0.16 16 21 C -0.08 -0.97 5.88 -19.86 -0.12 -1.09 16 22 C -0.11 -0.47 10.01 71.24 0.71 0.24 16 23 C -0.07 -1.12 9.65 22.38 0.22 -0.90 16 24 C 0.06 1.63 7.31 22.51 0.16 1.79 16 25 F -0.14 -4.69 15.42 44.97 0.69 -4.00 16 26 C 0.14 4.07 6.74 38.65 0.26 4.33 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.80 6.70 -2.39 -0.02 1.78 16 30 H 0.03 1.29 6.37 -2.38 -0.02 1.28 16 31 H 0.06 2.49 5.28 -2.39 -0.01 2.47 16 32 H 0.02 1.00 6.57 -2.39 -0.02 0.98 16 33 H 0.02 0.95 8.05 -2.38 -0.02 0.93 16 34 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.10 4.21 6.31 -2.39 -0.02 4.19 16 36 H 0.06 2.51 7.16 -2.39 -0.02 2.49 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.09 0.17 8.08 -2.39 -0.02 0.15 16 40 H 0.09 0.22 8.09 -2.38 -0.02 0.20 16 41 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.99 347.91 2.97 -65.02 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.08 Total: 3.86 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.24 Total: 22.85 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -5.96 Total: -101.51 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.11 Total: -31.92 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.69 Total: -4.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -67.99 2.97 -65.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125311825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.323 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds