Wall clock time and date at job start Tue Mar 31 2020 13:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00313 * 2 1 4 4 H 1.48500 * 109.46803 * 269.99969 * 3 2 1 5 5 H 1.48500 * 109.47088 * 29.99843 * 3 2 1 6 6 H 1.48494 * 109.47280 * 150.00035 * 3 2 1 7 7 C 1.38817 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99855 * 194.59257 * 7 2 1 9 9 N 1.36936 * 119.99865 * 14.59823 * 7 2 1 10 10 C 1.46964 * 120.59347 * 212.13583 * 9 7 2 11 11 C 1.53370 * 108.63567 * 235.19992 * 10 9 7 12 12 N 1.46963 * 108.63682 * 310.58064 * 11 10 9 13 13 C 1.34778 * 120.59211 * 235.20572 * 12 11 10 14 14 O 1.21644 * 119.99817 * 5.32825 * 13 12 11 15 15 C 1.47187 * 120.00085 * 185.33697 * 13 12 11 16 16 C 1.35630 * 123.19365 * 44.61027 * 15 13 12 17 17 S 1.70258 * 110.84426 * 179.97438 * 16 15 13 18 18 C 1.75602 * 92.62781 * 359.97438 * 17 16 15 19 19 C 1.34001 * 110.59569 * 0.02562 * 18 17 16 20 20 C 1.52018 * 123.45998 * 179.97438 * 19 18 17 21 21 C 1.53050 * 108.75545 * 342.85677 * 20 19 18 22 22 C 1.53161 * 109.20226 * 50.66206 * 21 20 19 23 23 C 1.51611 * 125.04832 * 179.97438 * 18 17 16 24 24 C 1.46964 * 118.81534 * 55.47068 * 12 11 10 25 25 C 1.46971 * 120.59337 * 32.10887 * 9 7 2 26 26 H 0.97002 * 119.99365 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.60908 * 115.46007 * 10 9 7 28 28 H 1.08994 * 109.60885 * 354.94889 * 10 9 7 29 29 H 1.08994 * 109.61411 * 190.83059 * 11 10 9 30 30 H 1.09004 * 109.60592 * 70.31828 * 11 10 9 31 31 H 1.07998 * 124.57278 * 359.96160 * 16 15 13 32 32 H 1.08998 * 109.59075 * 102.63643 * 20 19 18 33 33 H 1.09004 * 109.59119 * 222.93112 * 20 19 18 34 34 H 1.09001 * 109.51429 * 170.58376 * 21 20 19 35 35 H 1.09000 * 109.51478 * 290.74964 * 21 20 19 36 36 H 1.09005 * 109.54107 * 49.50170 * 22 21 20 37 37 H 1.08999 * 109.53499 * 169.75258 * 22 21 20 38 38 H 1.09002 * 109.59608 * 43.63221 * 23 18 17 39 39 H 1.08997 * 109.72479 * 283.25125 * 23 18 17 40 40 H 1.09001 * 109.60726 * 64.26888 * 24 12 11 41 41 H 1.09001 * 109.61201 * 184.77893 * 24 12 11 42 42 H 1.09004 * 109.60979 * 244.53989 * 25 9 7 43 43 H 1.08994 * 109.61086 * 5.05760 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0640 -1.2172 0.2362 9 7 1.3587 -2.3691 -0.2978 10 6 1.7686 -3.6352 0.3257 11 6 2.0715 -4.6516 -0.7822 12 7 0.9495 -4.6601 -1.7313 13 6 0.3081 -5.8085 -2.0249 14 8 0.5915 -6.8321 -1.4319 15 6 -0.7351 -5.8242 -3.0632 16 6 -0.5969 -5.2089 -4.2639 17 16 -1.9886 -5.4272 -5.2202 18 6 -2.7912 -6.3753 -3.9790 19 6 -2.0068 -6.4995 -2.8997 20 6 -2.4147 -7.2640 -1.6506 21 6 -3.9323 -7.4610 -1.6679 22 6 -4.3491 -8.0451 -3.0210 23 6 -4.1790 -6.9735 -4.1015 24 6 0.5431 -3.3949 -2.3590 25 6 0.2365 -2.3776 -1.2469 26 1 -0.4849 0.8401 -0.0004 27 1 0.9623 -4.0105 0.9559 28 1 2.6624 -3.4736 0.9283 29 1 2.1895 -5.6436 -0.3464 30 1 2.9868 -4.3658 -1.3006 31 1 0.2777 -4.6552 -4.5718 32 1 -1.9202 -8.2353 -1.6389 33 1 -2.1277 -6.6970 -0.7650 34 1 -4.2195 -8.1471 -0.8710 35 1 -4.4259 -6.5008 -1.5183 36 1 -3.7205 -8.9040 -3.2566 37 1 -5.3928 -8.3566 -2.9776 38 1 -4.2967 -7.4251 -5.0866 39 1 -4.9288 -6.1943 -3.9647 40 1 1.3521 -3.0217 -2.9870 41 1 -0.3486 -3.5569 -2.9647 42 1 -0.6788 -2.6634 -0.7286 43 1 0.1186 -1.3856 -1.6828 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130180364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:03 Heat of formation + Delta-G solvation = -3.465251 kcal Electronic energy + Delta-G solvation = -25272.980084 eV Core-core repulsion = 21830.092486 eV Total energy + Delta-G solvation = -3442.887598 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42234 -39.58925 -38.34232 -36.17139 -35.47142 -33.21864 -31.98353 -31.70750 -30.10524 -28.79990 -26.32984 -24.97570 -24.53856 -24.12857 -22.95956 -21.66413 -20.25226 -19.26831 -18.78185 -18.22843 -17.59214 -17.01331 -16.67746 -16.18005 -15.64581 -15.52955 -15.40041 -15.24025 -15.19302 -14.95421 -14.72346 -14.26750 -14.19595 -13.86901 -13.59388 -13.33553 -13.24081 -13.08405 -12.71489 -12.55406 -12.46626 -12.38656 -12.24938 -12.06889 -11.91316 -11.74201 -11.69838 -11.57703 -11.27975 -10.91632 -10.62312 -9.90420 -9.53770 -9.21706 -8.65434 -7.91181 -5.44903 -0.15931 0.58741 0.89319 1.05146 1.48154 1.48929 1.58177 1.79805 2.18967 2.49596 3.24331 3.53459 3.56478 3.63320 3.89025 4.00007 4.08009 4.17367 4.19057 4.26878 4.30855 4.34398 4.49559 4.57978 4.59145 4.64389 4.70476 4.71191 4.76337 4.83168 4.96948 4.98952 5.03250 5.08678 5.15667 5.18321 5.33755 5.44167 5.45843 5.53290 5.57831 5.61883 6.34308 6.39086 7.06516 7.08288 7.73536 8.30524 9.14199 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018195 B = 0.003634 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.490512 B = 7703.879874 C = 8069.699838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.041 4.041 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.271 4.271 8 H 0.069 0.931 9 N -0.607 5.607 10 C 0.133 3.867 11 C 0.106 3.894 12 N -0.595 5.595 13 C 0.571 3.429 14 O -0.580 6.580 15 C -0.166 4.166 16 C -0.222 4.222 17 S 0.238 5.762 18 C -0.204 4.204 19 C -0.087 4.087 20 C -0.052 4.052 21 C -0.117 4.117 22 C -0.111 4.111 23 C -0.045 4.045 24 C 0.093 3.907 25 C 0.171 3.829 26 H 0.253 0.747 27 H 0.005 0.995 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.180 0.820 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.098 0.902 42 H -0.007 1.007 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -13.278 -12.581 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.237 4.237 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.401 4.401 8 H 0.087 0.913 9 N -0.330 5.330 10 C 0.006 3.994 11 C -0.018 4.018 12 N -0.326 5.326 13 C 0.359 3.641 14 O -0.462 6.462 15 C -0.184 4.184 16 C -0.360 4.360 17 S 0.508 5.492 18 C -0.321 4.321 19 C -0.098 4.098 20 C -0.091 4.091 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.084 4.084 24 C -0.031 4.031 25 C 0.044 3.956 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.197 0.803 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.116 0.884 42 H 0.011 0.989 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.738 -13.140 -13.737 20.922 hybrid contribution 1.259 0.826 2.059 2.551 sum -7.479 -12.314 -11.678 18.546 Atomic orbital electron populations 1.70162 1.06811 1.26202 1.54670 1.25932 0.96032 1.01665 1.00115 0.85219 0.77989 0.79118 0.77777 1.20678 1.22240 1.19399 1.19516 0.92188 0.85157 1.43212 0.91297 1.44206 1.37578 1.03532 1.47710 1.21360 0.98140 0.86471 0.93389 1.22078 0.88276 1.00293 0.91160 1.48016 1.33294 1.07679 1.43586 1.18178 0.80939 0.82744 0.82215 1.90695 1.67516 1.33756 1.54197 1.20040 0.96676 1.05718 0.95954 1.25651 1.06483 1.05090 0.98779 1.82518 1.03525 1.47476 1.15723 1.25118 1.02732 1.06851 0.97364 1.20427 0.91556 1.00186 0.97611 1.20391 0.97589 0.98548 0.92619 1.21595 0.92939 1.01838 0.99078 1.21581 1.02921 0.97431 0.93012 1.20495 0.88522 0.98314 1.01093 1.22736 1.00962 0.83144 0.96283 1.20983 0.88204 0.97309 0.89107 0.93828 0.97744 0.90547 0.89499 0.90535 0.80258 0.91056 0.93635 0.90093 0.91851 0.91699 0.88511 0.88294 0.88931 0.90679 0.88373 0.98921 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.04 11.32 21.65 0.25 -53.79 16 2 C -0.04 -2.24 4.95 84.86 0.42 -1.82 16 3 Si 0.97 43.52 29.58 68.60 2.03 45.55 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.27 -14.59 9.55 84.03 0.80 -13.79 16 8 H 0.07 3.60 7.87 -2.91 -0.02 3.58 16 9 N -0.61 -30.54 2.95 -697.33 -2.06 -32.60 16 10 C 0.13 5.80 6.67 86.41 0.58 6.38 16 11 C 0.11 4.02 6.60 86.42 0.57 4.59 16 12 N -0.59 -22.74 2.94 -821.29 -2.42 -25.15 16 13 C 0.57 21.90 7.18 86.59 0.62 22.52 16 14 O -0.58 -25.10 15.91 -4.17 -0.07 -25.16 16 15 C -0.17 -5.31 5.05 -19.82 -0.10 -5.41 16 16 C -0.22 -5.71 8.37 67.22 0.56 -5.15 16 17 S 0.24 4.61 22.99 -56.49 -1.30 3.31 16 18 C -0.20 -4.50 6.32 25.01 0.16 -4.34 16 19 C -0.09 -2.51 5.94 -18.70 -0.11 -2.62 16 20 C -0.05 -1.45 5.34 30.29 0.16 -1.29 16 21 C -0.12 -2.30 5.90 30.66 0.18 -2.12 16 22 C -0.11 -1.62 5.93 30.69 0.18 -1.44 16 23 C -0.05 -0.67 6.26 30.18 0.19 -0.48 16 24 C 0.09 3.44 5.58 86.57 0.48 3.93 16 25 C 0.17 8.14 5.48 86.56 0.47 8.62 16 26 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 28 H 0.08 3.13 7.93 -2.39 -0.02 3.12 16 29 H 0.09 3.24 6.99 -2.39 -0.02 3.22 16 30 H 0.08 2.70 8.14 -2.38 -0.02 2.69 16 31 H 0.18 4.14 7.31 -2.91 -0.02 4.12 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.04 1.51 8.13 -2.38 -0.02 1.49 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 36 H 0.06 1.00 8.11 -2.38 -0.02 0.98 16 37 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.10 3.25 4.86 -2.39 -0.01 3.24 16 42 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 43 H 0.07 3.76 6.21 -2.39 -0.01 3.74 16 Total: -1.00 -68.26 349.22 2.62 -65.64 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.01 Total: 14.61 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.17 Total: 7.58 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -4.23 Total: -111.54 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.07 Total: -25.16 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.30 Total: 3.31 kcal Total: -68.26 2.62 -65.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130180364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.179 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds