Wall clock time and date at job start Tue Mar 31 2020 12:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47101 * 2 1 4 4 C 1.46503 * 119.99483 * 274.96216 * 3 2 1 5 5 C 1.50700 * 109.47131 * 270.00255 * 4 3 2 6 6 H 1.07994 * 120.00560 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99553 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00546 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99566 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47636 * 59.99887 * 9 7 5 11 11 H 1.48504 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47397 * 299.99752 * 9 7 5 13 13 C 1.34768 * 120.00509 * 94.96757 * 3 2 1 14 14 O 1.21599 * 120.00443 * 185.55904 * 13 3 2 15 15 C 1.47455 * 119.99701 * 5.56028 * 13 3 2 16 16 C 1.39828 * 120.10788 * 55.03369 * 15 13 3 17 17 C 1.37542 * 119.96001 * 180.02562 * 16 15 13 18 18 C 1.39288 * 120.17820 * 359.97438 * 17 16 15 19 19 C 1.38989 * 120.12949 * 359.97438 * 18 17 16 20 20 C 1.38017 * 120.07761 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.06848 * 180.02562 * 20 19 18 22 22 N 1.39395 * 119.87519 * 180.02562 * 18 17 16 23 23 C 1.34526 * 120.55057 * 18.57348 * 22 18 17 24 24 O 1.21279 * 119.58757 * 180.72170 * 23 22 18 25 25 C 1.50486 * 120.81702 * 0.74641 * 23 22 18 26 26 C 1.50716 * 120.03701 * 180.02562 * 17 16 15 27 27 H 1.08992 * 109.47582 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47235 * 300.00559 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99975 * 1 2 3 30 30 H 1.08995 * 109.46791 * 239.99370 * 2 1 3 31 31 H 1.09004 * 109.46503 * 119.99505 * 2 1 3 32 32 H 1.09001 * 109.47202 * 30.00473 * 4 3 2 33 33 H 1.09004 * 109.46891 * 150.00692 * 4 3 2 34 34 H 0.96999 * 120.00345 * 180.02562 * 8 7 5 35 35 H 1.08003 * 120.01771 * 0.02562 * 16 15 13 36 36 H 1.08003 * 119.96365 * 179.97438 * 19 18 17 37 37 H 0.97002 * 119.72510 * 198.59875 * 22 18 17 38 38 H 1.09002 * 109.39036 * 204.66360 * 25 23 22 39 39 H 1.08997 * 109.42183 * 84.90355 * 25 23 22 40 40 H 1.08993 * 109.47228 * 266.00993 * 26 17 16 41 41 H 1.09000 * 109.46406 * 26.00575 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1590 2.1083 -1.2641 5 6 3.5418 1.8857 -1.8204 6 1 4.2453 1.2645 -1.2862 7 6 3.9086 2.4753 -3.0116 8 7 3.0522 3.2322 -3.6620 9 14 5.6224 2.1988 -3.7016 10 1 5.8321 0.7481 -3.9397 11 1 5.7649 2.9360 -4.9828 12 1 6.6323 2.6922 -2.7311 13 6 2.3383 1.9829 1.1627 14 8 2.6466 3.1591 1.1740 15 6 2.3145 1.2149 2.4212 16 6 3.0572 0.0359 2.5376 17 6 3.0324 -0.6784 3.7127 18 6 2.2695 -0.2303 4.7885 19 6 1.5299 0.9414 4.6793 20 6 1.5490 1.6644 3.5038 21 9 0.8305 2.8036 3.3980 22 7 2.2493 -0.9589 5.9767 23 6 3.2126 -1.8595 6.2430 24 8 3.1708 -2.4932 7.2762 25 6 4.3415 -2.0899 5.2750 26 6 3.8328 -1.9491 3.8402 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.4180 1.7454 -1.9763 33 1 2.0046 3.1732 -1.0898 34 1 3.3102 3.6467 -4.5001 35 1 3.6500 -0.3136 1.7052 36 1 0.9390 1.2862 5.5149 37 1 1.5347 -0.8156 6.6167 38 1 4.7436 -3.0926 5.4200 39 1 5.1276 -1.3564 5.4538 40 1 3.2013 -2.8025 3.5935 41 1 4.6806 -1.9146 3.1560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131678491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:47 Heat of formation + Delta-G solvation = -92.842999 kcal Electronic energy + Delta-G solvation = -27057.202928 eV Core-core repulsion = 23044.226445 eV Total energy + Delta-G solvation = -4012.976484 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -48.91609 -41.34209 -39.58251 -38.31068 -35.38531 -35.30272 -34.31851 -32.81867 -30.57481 -30.12693 -29.78704 -27.11984 -24.86285 -24.30217 -23.45346 -22.82205 -22.42162 -20.05057 -18.88381 -18.29927 -17.62737 -16.94738 -16.45464 -16.40596 -16.03563 -15.88098 -15.67917 -15.28235 -14.83014 -14.45535 -14.36774 -14.18717 -13.81974 -13.62325 -13.37222 -13.19470 -13.04384 -12.71075 -12.42433 -12.11360 -12.01305 -11.88140 -11.58152 -11.47079 -11.25613 -10.98321 -10.90207 -10.68287 -10.48499 -10.41051 -10.18442 -9.70966 -9.17016 -8.99390 -8.47589 -8.31414 -7.73227 -6.08088 -4.13761 0.59744 0.88225 2.08947 2.57148 3.04672 3.28606 3.33984 3.35924 3.47204 3.75562 3.90562 4.17467 4.26355 4.35045 4.40800 4.52793 4.77360 4.78583 4.86990 5.08137 5.26155 5.31616 5.33733 5.40540 5.47778 5.52335 5.59913 5.71370 5.75349 5.84180 5.98477 6.03571 6.21101 6.25069 6.44889 6.47878 6.73058 7.01157 7.40585 7.46599 7.55608 7.87378 8.17714 8.30144 8.80902 8.96729 9.51333 10.99950 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003644 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.459288 B = 7682.548880 C = 8450.270523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.586 5.586 4 C 0.246 3.754 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.550 3.450 14 O -0.526 6.526 15 C -0.162 4.162 16 C -0.024 4.024 17 C -0.140 4.140 18 C 0.197 3.803 19 C -0.194 4.194 20 C 0.172 3.828 21 F -0.120 7.120 22 N -0.660 5.660 23 C 0.524 3.476 24 O -0.527 6.527 25 C -0.139 4.139 26 C -0.075 4.075 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.412 0.588 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -12.283 15.586 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.026 4.026 3 N -0.317 5.317 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.336 3.664 14 O -0.403 6.403 15 C -0.167 4.167 16 C -0.043 4.043 17 C -0.143 4.143 18 C 0.100 3.900 19 C -0.216 4.216 20 C 0.151 3.849 21 F -0.098 7.098 22 N -0.304 5.304 23 C 0.313 3.687 24 O -0.403 6.403 25 C -0.179 4.179 26 C -0.112 4.112 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.336 -11.934 15.871 19.995 hybrid contribution 0.352 0.301 -0.239 0.521 sum -1.985 -11.633 15.633 19.587 Atomic orbital electron populations 1.22169 0.96622 1.01386 1.02368 1.21643 0.93952 0.84145 1.02865 1.48190 1.62276 1.13566 1.07701 1.19327 0.96919 0.93221 0.77812 1.21373 0.98482 1.30907 1.06153 0.92432 1.24931 0.97515 0.94839 0.96706 1.69917 1.35060 1.31777 1.16390 0.86559 0.84411 0.78195 0.78250 1.20212 1.21157 1.20153 1.17788 0.78999 0.86705 0.82937 1.90808 1.47884 1.15374 1.86200 1.20311 1.02177 0.98276 0.95973 1.20880 0.95736 0.90994 0.96707 1.19425 1.02674 0.99345 0.92888 1.17281 0.96322 0.90755 0.85692 1.20497 1.06662 0.95883 0.98569 1.17226 0.91647 0.83084 0.92962 1.91579 1.74916 1.46943 1.96342 1.43518 1.28059 1.39179 1.19619 1.20835 0.82969 0.77644 0.87220 1.90788 1.76035 1.46421 1.27024 1.21724 0.96592 1.05960 0.93634 1.20431 1.00014 0.94792 0.95959 0.92159 0.93211 0.91926 0.89884 0.91026 0.94728 0.93641 0.92577 0.83300 0.83755 0.74933 0.87028 0.87500 0.89497 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.50 5.95 -4.04 -0.02 1.47 16 3 N -0.59 -12.02 2.46 -176.32 -0.43 -12.46 16 4 C 0.25 6.26 5.23 -5.19 -0.03 6.23 16 5 C -0.53 -14.49 9.39 -34.44 -0.32 -14.81 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.55 11.48 6.83 -12.51 -0.09 11.40 16 14 O -0.53 -13.49 16.44 5.28 0.09 -13.40 16 15 C -0.16 -2.52 4.91 -104.89 -0.51 -3.04 16 16 C -0.02 -0.29 7.09 -39.24 -0.28 -0.57 16 17 C -0.14 -1.32 5.65 -104.48 -0.59 -1.92 16 18 C 0.20 1.86 6.51 -83.75 -0.54 1.31 16 19 C -0.19 -2.03 9.87 -39.38 -0.39 -2.42 16 20 C 0.17 2.45 7.27 -39.00 -0.28 2.16 16 21 F -0.12 -1.98 16.67 2.25 0.04 -1.94 16 22 N -0.66 -5.50 5.34 -9.99 -0.05 -5.56 16 23 C 0.52 4.96 7.71 -11.20 -0.09 4.87 16 24 O -0.53 -6.78 17.91 5.56 0.10 -6.68 16 25 C -0.14 -0.94 6.08 -28.05 -0.17 -1.11 16 26 C -0.07 -0.49 5.99 -27.94 -0.17 -0.66 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.29 8.11 -51.93 -0.42 0.86 16 31 H 0.07 0.90 4.42 -51.93 -0.23 0.67 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.33 7.35 -51.93 -0.38 0.94 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.15 1.66 7.58 -52.48 -0.40 1.26 16 36 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.41 2.78 8.82 -40.82 -0.36 2.42 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.52 8.06 -51.93 -0.42 0.10 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -34.86 352.56 -7.57 -42.43 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.13 Total: -1.27 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.20 Total: 2.69 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.25 Total: -43.31 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.19 Total: -20.08 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.86 -7.57 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131678491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.416 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds