Wall clock time and date at job start Tue Mar 31 2020 12:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47101 * 2 1 4 4 C 1.46503 * 119.99483 * 274.96216 * 3 2 1 5 5 C 1.50700 * 109.47131 * 270.00255 * 4 3 2 6 6 H 1.07994 * 120.00560 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99553 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00546 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99566 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47636 * 59.99887 * 9 7 5 11 11 H 1.48504 * 109.46947 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47397 * 299.99752 * 9 7 5 13 13 C 1.34768 * 120.00509 * 94.96757 * 3 2 1 14 14 O 1.21599 * 120.00443 * 185.55904 * 13 3 2 15 15 C 1.47455 * 119.99701 * 5.56028 * 13 3 2 16 16 C 1.39828 * 120.10788 * 55.03369 * 15 13 3 17 17 C 1.37542 * 119.96001 * 180.02562 * 16 15 13 18 18 C 1.39288 * 120.17820 * 359.97438 * 17 16 15 19 19 C 1.38989 * 120.12949 * 359.97438 * 18 17 16 20 20 C 1.38017 * 120.07761 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.06848 * 180.02562 * 20 19 18 22 22 N 1.39395 * 119.87519 * 180.02562 * 18 17 16 23 23 C 1.34526 * 120.55057 * 18.57348 * 22 18 17 24 24 O 1.21279 * 119.58757 * 180.72170 * 23 22 18 25 25 C 1.50486 * 120.81702 * 0.74641 * 23 22 18 26 26 C 1.50716 * 120.03701 * 180.02562 * 17 16 15 27 27 H 1.08992 * 109.47582 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47235 * 300.00559 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99975 * 1 2 3 30 30 H 1.08995 * 109.46791 * 239.99370 * 2 1 3 31 31 H 1.09004 * 109.46503 * 119.99505 * 2 1 3 32 32 H 1.09001 * 109.47202 * 30.00473 * 4 3 2 33 33 H 1.09004 * 109.46891 * 150.00692 * 4 3 2 34 34 H 0.96999 * 120.00345 * 180.02562 * 8 7 5 35 35 H 1.08003 * 120.01771 * 0.02562 * 16 15 13 36 36 H 1.08003 * 119.96365 * 179.97438 * 19 18 17 37 37 H 0.97002 * 119.72510 * 198.59875 * 22 18 17 38 38 H 1.09002 * 109.39036 * 204.66360 * 25 23 22 39 39 H 1.08997 * 109.42183 * 84.90355 * 25 23 22 40 40 H 1.08993 * 109.47228 * 266.00993 * 26 17 16 41 41 H 1.09000 * 109.46406 * 26.00575 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1590 2.1083 -1.2641 5 6 3.5418 1.8857 -1.8204 6 1 4.2453 1.2645 -1.2862 7 6 3.9086 2.4753 -3.0116 8 7 3.0522 3.2322 -3.6620 9 14 5.6224 2.1988 -3.7016 10 1 5.8321 0.7481 -3.9397 11 1 5.7649 2.9360 -4.9828 12 1 6.6323 2.6922 -2.7311 13 6 2.3383 1.9829 1.1627 14 8 2.6466 3.1591 1.1740 15 6 2.3145 1.2149 2.4212 16 6 3.0572 0.0359 2.5376 17 6 3.0324 -0.6784 3.7127 18 6 2.2695 -0.2303 4.7885 19 6 1.5299 0.9414 4.6793 20 6 1.5490 1.6644 3.5038 21 9 0.8305 2.8036 3.3980 22 7 2.2493 -0.9589 5.9767 23 6 3.2126 -1.8595 6.2430 24 8 3.1708 -2.4932 7.2762 25 6 4.3415 -2.0899 5.2750 26 6 3.8328 -1.9491 3.8402 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.4180 1.7454 -1.9763 33 1 2.0046 3.1732 -1.0898 34 1 3.3102 3.6467 -4.5001 35 1 3.6500 -0.3136 1.7052 36 1 0.9390 1.2862 5.5149 37 1 1.5347 -0.8156 6.6167 38 1 4.7436 -3.0926 5.4200 39 1 5.1276 -1.3564 5.4538 40 1 3.2013 -2.8025 3.5935 41 1 4.6806 -1.9146 3.1560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131678491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:45 Heat of formation + Delta-G solvation = -116.354608 kcal Electronic energy + Delta-G solvation = -27058.222468 eV Core-core repulsion = 23044.226445 eV Total energy + Delta-G solvation = -4013.996024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.07689 -42.16057 -40.92679 -39.41745 -37.03729 -36.27080 -34.98989 -34.83334 -31.75805 -31.45530 -30.68636 -28.93655 -25.73857 -25.50097 -24.79955 -23.88237 -23.72948 -21.14755 -20.05821 -19.19845 -18.69117 -18.44982 -18.08423 -17.50432 -17.29237 -16.94448 -16.76470 -16.48968 -16.27148 -15.89251 -15.35034 -15.16483 -14.83619 -14.71534 -14.64255 -14.39911 -14.22198 -13.90526 -13.62880 -13.51470 -13.26413 -13.12962 -12.89582 -12.66389 -12.54899 -12.53712 -12.16807 -12.10529 -12.02497 -11.72752 -11.62067 -11.17013 -10.79234 -10.62122 -9.91582 -9.53018 -9.18925 -8.20342 -6.35917 -0.38296 -0.01734 1.28549 1.40311 1.44851 1.51911 1.73006 1.84701 2.19441 2.39064 2.48342 3.04907 3.09760 3.32735 3.46043 3.55433 3.61893 3.88868 4.06577 4.13708 4.25842 4.31192 4.40139 4.54582 4.61845 4.69786 4.83024 4.86523 4.92371 4.94786 4.96722 5.04740 5.10090 5.12056 5.22227 5.34780 5.47999 5.57283 5.63115 5.83117 5.97664 6.05827 6.64990 6.74095 6.85454 7.23393 7.39252 8.87139 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003644 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.459288 B = 7682.548880 C = 8450.270523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.092 3.908 3 N -0.590 5.590 4 C 0.261 3.739 5 C -0.544 4.544 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.970 3.030 10 H -0.255 1.255 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.545 3.455 14 O -0.592 6.592 15 C -0.185 4.185 16 C -0.021 4.021 17 C -0.121 4.121 18 C 0.211 3.789 19 C -0.178 4.178 20 C 0.148 3.852 21 F -0.143 7.143 22 N -0.651 5.651 23 C 0.524 3.476 24 O -0.562 6.562 25 C -0.136 4.136 26 C -0.073 4.073 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.025 0.975 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.421 0.579 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -15.838 17.061 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.029 4.029 3 N -0.319 5.319 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.794 3.206 10 H -0.179 1.179 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.333 3.667 14 O -0.473 6.473 15 C -0.190 4.190 16 C -0.040 4.040 17 C -0.124 4.124 18 C 0.113 3.887 19 C -0.199 4.199 20 C 0.127 3.873 21 F -0.121 7.121 22 N -0.295 5.295 23 C 0.315 3.685 24 O -0.440 6.440 25 C -0.176 4.176 26 C -0.110 4.110 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.043 0.957 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.188 0.812 37 H 0.260 0.740 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.963 -15.549 17.365 23.329 hybrid contribution -0.141 1.356 -0.582 1.482 sum -1.103 -14.193 16.784 22.008 Atomic orbital electron populations 1.22123 0.95255 1.03483 1.01055 1.21982 0.95084 0.81298 1.04551 1.48186 1.62201 1.15346 1.06187 1.18767 0.96313 0.90958 0.79935 1.21688 0.99139 1.30948 1.06419 0.91907 1.25911 1.01905 0.94353 0.97094 1.70061 1.37336 1.32770 1.16858 0.85427 0.78706 0.79208 0.77236 1.17915 1.20818 1.20168 1.18608 0.77250 0.86320 0.84519 1.90752 1.50713 1.18461 1.87401 1.19914 1.05494 0.99891 0.93701 1.20910 0.95167 0.89766 0.98159 1.19691 1.01579 0.99709 0.91430 1.17302 0.95238 0.90107 0.86047 1.20629 1.06254 0.95363 0.97647 1.17502 0.92478 0.83212 0.94065 1.91519 1.75631 1.48417 1.96556 1.43504 1.28244 1.38537 1.19211 1.21378 0.83282 0.76808 0.87079 1.90788 1.76832 1.47694 1.28709 1.21810 0.95622 1.07468 0.92656 1.20576 1.00666 0.93376 0.96333 0.88233 0.93590 0.94209 0.89889 0.87490 0.95736 0.98839 0.92444 0.82331 0.81170 0.73984 0.85205 0.86424 0.87615 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 10.24 71.98 0.74 -3.53 16 2 C 0.09 2.77 5.95 86.38 0.51 3.28 16 3 N -0.59 -25.15 2.46 -830.01 -2.04 -27.19 16 4 C 0.26 14.15 5.23 85.63 0.45 14.59 16 5 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 6 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 9 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 10 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 C 0.54 23.82 6.83 86.67 0.59 24.42 16 14 O -0.59 -32.68 16.44 -4.03 -0.07 -32.74 16 15 C -0.18 -5.72 4.91 -20.04 -0.10 -5.82 16 16 C -0.02 -0.45 7.09 22.49 0.16 -0.29 16 17 C -0.12 -1.81 5.65 -19.77 -0.11 -1.92 16 18 C 0.21 3.24 6.51 38.37 0.25 3.49 16 19 C -0.18 -3.30 9.87 22.40 0.22 -3.08 16 20 C 0.15 4.19 7.27 22.64 0.16 4.35 16 21 F -0.14 -4.94 16.67 44.97 0.75 -4.19 16 22 N -0.65 -8.47 5.34 -304.05 -1.62 -10.10 16 23 C 0.52 7.98 7.71 87.63 0.68 8.66 16 24 O -0.56 -12.91 17.91 -3.03 -0.05 -12.97 16 25 C -0.14 -1.20 6.08 29.74 0.18 -1.02 16 26 C -0.07 -0.58 5.99 29.81 0.18 -0.40 16 27 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 2.49 8.11 -2.39 -0.02 2.47 16 31 H 0.11 2.43 4.42 -2.38 -0.01 2.42 16 32 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 33 H -0.01 -0.42 7.35 -2.38 -0.02 -0.43 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.16 3.05 7.58 -2.91 -0.02 3.03 16 36 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.42 4.26 8.82 -92.71 -0.82 3.44 16 38 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.12 0.59 8.06 -2.39 -0.02 0.57 16 Total: -1.00 -82.41 352.56 4.15 -78.25 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.26 Total: 5.92 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 4.61 Total: 13.25 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -3.38 Total: -93.17 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.12 Total: -45.71 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.75 Total: -4.19 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -82.41 4.15 -78.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131678491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.101 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds