Wall clock time and date at job start Tue Mar 31 2020 13:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99944 * 2 1 4 4 H 1.48494 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47031 * 299.99895 * 3 2 1 6 6 H 1.48504 * 109.47101 * 59.99809 * 3 2 1 7 7 C 1.37875 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47131 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46757 * 54.99948 * 10 9 7 12 12 N 1.46497 * 109.47106 * 295.00224 * 10 9 7 13 13 C 1.34784 * 120.00094 * 154.99882 * 12 10 9 14 14 O 1.21581 * 119.99487 * 354.79961 * 13 12 10 15 15 N 1.34770 * 119.99982 * 175.07167 * 13 12 10 16 16 C 1.46378 * 119.64485 * 184.73450 * 15 13 12 17 17 C 1.53757 * 109.20864 * 114.91221 * 16 15 13 18 18 S 1.81736 * 108.75704 * 57.82879 * 17 16 15 19 19 C 1.81747 * 102.30563 * 305.34999 * 18 17 16 20 20 C 1.46383 * 119.65063 * 4.99908 * 15 13 12 21 21 C 1.50692 * 109.46900 * 175.00074 * 10 9 7 22 22 C 1.38234 * 120.00183 * 79.73298 * 21 10 9 23 23 C 1.38236 * 119.99962 * 179.78660 * 22 21 10 24 24 C 1.38229 * 120.00178 * 0.43624 * 23 22 21 25 25 C 1.38241 * 120.00074 * 359.81647 * 24 23 22 26 26 C 1.38234 * 119.99752 * 359.97438 * 25 24 23 27 27 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47085 * 60.00194 * 9 7 2 29 29 H 1.08993 * 109.46984 * 299.99768 * 9 7 2 30 30 H 0.96997 * 120.00337 * 335.00113 * 12 10 9 31 31 H 1.09005 * 109.46896 * 234.91313 * 16 15 13 32 32 H 1.08996 * 109.47075 * 354.90530 * 16 15 13 33 33 H 1.09002 * 109.69305 * 297.99127 * 17 16 15 34 34 H 1.09006 * 109.51214 * 177.55614 * 17 16 15 35 35 H 1.08999 * 109.57922 * 294.74275 * 19 18 17 36 36 H 1.08998 * 109.69373 * 174.40238 * 19 18 17 37 37 H 1.08997 * 109.46114 * 5.09688 * 20 15 13 38 38 H 1.09003 * 109.46505 * 125.08348 * 20 15 13 39 39 H 1.07998 * 119.99875 * 359.97438 * 22 21 10 40 40 H 1.08003 * 120.00163 * 180.27190 * 23 22 21 41 41 H 1.07997 * 120.00271 * 179.83306 * 24 23 22 42 42 H 1.08002 * 120.00214 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.99875 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8423 12 7 3.0064 -3.6539 -1.2512 13 6 4.2312 -4.2145 -1.2990 14 8 4.7438 -4.6424 -0.2830 15 7 4.8898 -4.2958 -2.4720 16 6 6.1725 -4.9980 -2.5349 17 6 6.0260 -6.2401 -3.4294 18 16 5.4664 -5.7118 -5.0758 19 6 3.9652 -4.7633 -4.6888 20 6 4.3175 -3.6759 -3.6683 21 6 1.4960 -4.9636 0.1243 22 6 0.8896 -5.5205 -0.9861 23 6 0.2060 -6.7166 -0.8734 24 6 0.1209 -7.3514 0.3515 25 6 0.7228 -6.7919 1.4632 26 6 1.4102 -5.5980 1.3496 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5572 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.6289 -3.2450 -2.0457 31 1 6.9300 -4.3343 -2.9520 32 1 6.4695 -5.3029 -1.5315 33 1 5.2935 -6.9208 -2.9955 34 1 6.9893 -6.7429 -3.5148 35 1 3.2111 -5.4285 -4.2683 36 1 3.5787 -4.3006 -5.5969 37 1 3.4160 -3.1267 -3.3968 38 1 5.0435 -2.9897 -4.1045 39 1 0.9526 -5.0225 -1.9424 40 1 -0.2640 -7.1539 -1.7420 41 1 -0.4155 -8.2845 0.4402 42 1 0.6568 -7.2881 2.4202 43 1 1.8808 -5.1611 2.2180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151350084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:56 Heat of formation + Delta-G solvation = 0.461923 kcal Electronic energy + Delta-G solvation = -25262.841620 eV Core-core repulsion = 21820.124318 eV Total energy + Delta-G solvation = -3442.717303 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22447 -38.80923 -36.41790 -35.22526 -32.90979 -32.05723 -31.02646 -30.50267 -29.65700 -28.64933 -25.03830 -23.81233 -23.17161 -22.30238 -21.97229 -20.30223 -19.45981 -18.35997 -16.84326 -16.39399 -16.20389 -16.05899 -15.24912 -14.95574 -14.77503 -14.57230 -14.49016 -14.14218 -13.80439 -13.58692 -13.42125 -13.03312 -12.97621 -12.67698 -12.53837 -12.39411 -12.13753 -11.87224 -11.54450 -11.21061 -11.07020 -10.95517 -10.76841 -10.61978 -10.46117 -9.97500 -9.79984 -9.73164 -9.31227 -8.90367 -8.56627 -8.49281 -8.38305 -8.21048 -7.81433 -6.12032 -4.15386 1.55692 1.75312 1.77883 2.31948 2.85301 3.23669 3.32745 3.37235 3.51737 4.07145 4.28490 4.37688 4.54923 4.77991 4.89913 4.96172 5.06600 5.21137 5.24258 5.24765 5.25046 5.34827 5.43913 5.51640 5.61739 5.63476 5.78644 5.88188 5.92188 6.12272 6.32410 6.38421 6.51520 6.58348 6.81854 6.83173 6.89703 7.02237 7.14935 7.38127 7.47465 7.62269 7.85163 8.22708 8.32897 8.91080 8.95757 9.49931 10.98465 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.005392 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.428627 B = 5191.381369 C = 7343.050082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.199 3.801 11 H 0.088 0.912 12 N -0.714 5.714 13 C 0.707 3.293 14 O -0.591 6.591 15 N -0.638 5.638 16 C 0.130 3.870 17 C -0.097 4.097 18 S -0.265 6.265 19 C -0.099 4.099 20 C 0.110 3.890 21 C -0.072 4.072 22 C -0.107 4.107 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.108 4.108 27 H 0.261 0.739 28 H 0.023 0.977 29 H 0.036 0.964 30 H 0.396 0.604 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 -12.293 -7.770 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.094 3.906 11 H 0.106 0.894 12 N -0.369 5.369 13 C 0.408 3.592 14 O -0.469 6.469 15 N -0.376 5.376 16 C 0.004 3.996 17 C -0.247 4.247 18 S -0.039 6.039 19 C -0.249 4.249 20 C -0.015 4.015 21 C -0.074 4.074 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.233 0.767 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.560 -12.692 -8.012 16.380 hybrid contribution -0.466 1.351 0.632 1.563 sum 6.095 -11.340 -7.380 14.840 Atomic orbital electron populations 1.69967 1.06002 1.26711 1.50379 1.24985 0.94785 0.99215 0.95144 0.86553 0.80179 0.83752 0.77651 1.19748 1.21031 1.20954 1.21169 0.93130 0.90319 1.51087 0.92329 1.19398 0.93184 0.90201 0.98562 1.20154 0.92974 0.91733 0.85695 0.89394 1.45360 1.16062 1.60695 1.14769 1.15940 0.81337 0.78896 0.83020 1.90862 1.68139 1.55363 1.32582 1.47088 1.22960 1.59544 1.08027 1.21521 0.84650 0.91751 1.01656 1.23982 1.05163 1.00988 0.94542 1.86768 1.33559 1.69158 1.14380 1.23879 0.97381 1.00252 1.03388 1.21675 1.00328 0.94102 0.85443 1.20604 0.96756 0.96667 0.93325 1.20863 0.97658 0.95566 0.98414 1.21032 0.99977 0.95993 0.97356 1.20991 1.01045 1.00040 0.93215 1.21047 0.98533 0.96190 0.98287 1.21028 0.99077 0.95059 0.97446 0.92914 0.95849 0.94624 0.76723 0.90431 0.87575 0.89528 0.86944 0.89383 0.86657 0.88621 0.89741 0.86837 0.86818 0.86857 0.86595 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.53 8.84 -34.44 -0.30 -13.84 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 10 C 0.20 4.01 2.16 -69.09 -0.15 3.87 16 11 H 0.09 1.97 7.37 -51.93 -0.38 1.58 16 12 N -0.71 -12.73 3.94 -59.82 -0.24 -12.97 16 13 C 0.71 12.60 8.21 -86.92 -0.71 11.89 16 14 O -0.59 -12.57 15.28 5.29 0.08 -12.49 16 15 N -0.64 -8.83 2.78 -179.00 -0.50 -9.33 16 16 C 0.13 1.55 6.27 -3.71 -0.02 1.53 16 17 C -0.10 -1.00 6.68 37.55 0.25 -0.75 16 18 S -0.26 -2.85 22.29 -107.50 -2.40 -5.25 16 19 C -0.10 -0.98 6.67 37.28 0.25 -0.73 16 20 C 0.11 1.23 6.19 -3.99 -0.02 1.21 16 21 C -0.07 -1.32 4.91 -104.63 -0.51 -1.84 16 22 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 23 C -0.13 -1.84 10.05 -39.59 -0.40 -2.23 16 24 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 25 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 26 C -0.11 -1.86 9.67 -39.58 -0.38 -2.24 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.40 6.45 5.98 -40.82 -0.24 6.21 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.42 6.87 -51.93 -0.36 1.06 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 0.94 8.14 -51.92 -0.42 0.51 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.08 5.47 -51.93 -0.28 0.80 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.11 1.75 7.73 -52.49 -0.41 1.35 16 40 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -31.07 364.26 -11.53 -42.60 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.29 Total: 8.45 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.40 Total: -7.83 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.00 Total: -46.78 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.40 Total: -5.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.07 -11.53 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151350084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.064 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds