Wall clock time and date at job start Tue Mar 31 2020 13:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99944 * 2 1 4 4 H 1.48494 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47031 * 299.99895 * 3 2 1 6 6 H 1.48504 * 109.47101 * 59.99809 * 3 2 1 7 7 C 1.37875 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99592 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00426 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47131 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46757 * 54.99948 * 10 9 7 12 12 N 1.46497 * 109.47106 * 295.00224 * 10 9 7 13 13 C 1.34784 * 120.00094 * 154.99882 * 12 10 9 14 14 O 1.21581 * 119.99487 * 354.79961 * 13 12 10 15 15 N 1.34770 * 119.99982 * 175.07167 * 13 12 10 16 16 C 1.46378 * 119.64485 * 184.73450 * 15 13 12 17 17 C 1.53757 * 109.20864 * 114.91221 * 16 15 13 18 18 S 1.81736 * 108.75704 * 57.82879 * 17 16 15 19 19 C 1.81747 * 102.30563 * 305.34999 * 18 17 16 20 20 C 1.46383 * 119.65063 * 4.99908 * 15 13 12 21 21 C 1.50692 * 109.46900 * 175.00074 * 10 9 7 22 22 C 1.38234 * 120.00183 * 79.73298 * 21 10 9 23 23 C 1.38236 * 119.99962 * 179.78660 * 22 21 10 24 24 C 1.38229 * 120.00178 * 0.43624 * 23 22 21 25 25 C 1.38241 * 120.00074 * 359.81647 * 24 23 22 26 26 C 1.38234 * 119.99752 * 359.97438 * 25 24 23 27 27 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47085 * 60.00194 * 9 7 2 29 29 H 1.08993 * 109.46984 * 299.99768 * 9 7 2 30 30 H 0.96997 * 120.00337 * 335.00113 * 12 10 9 31 31 H 1.09005 * 109.46896 * 234.91313 * 16 15 13 32 32 H 1.08996 * 109.47075 * 354.90530 * 16 15 13 33 33 H 1.09002 * 109.69305 * 297.99127 * 17 16 15 34 34 H 1.09006 * 109.51214 * 177.55614 * 17 16 15 35 35 H 1.08999 * 109.57922 * 294.74275 * 19 18 17 36 36 H 1.08998 * 109.69373 * 174.40238 * 19 18 17 37 37 H 1.08997 * 109.46114 * 5.09688 * 20 15 13 38 38 H 1.09003 * 109.46505 * 125.08348 * 20 15 13 39 39 H 1.07998 * 119.99875 * 359.97438 * 22 21 10 40 40 H 1.08003 * 120.00163 * 180.27190 * 23 22 21 41 41 H 1.07997 * 120.00271 * 179.83306 * 24 23 22 42 42 H 1.08002 * 120.00214 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.99875 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8423 12 7 3.0064 -3.6539 -1.2512 13 6 4.2312 -4.2145 -1.2990 14 8 4.7438 -4.6424 -0.2830 15 7 4.8898 -4.2958 -2.4720 16 6 6.1725 -4.9980 -2.5349 17 6 6.0260 -6.2401 -3.4294 18 16 5.4664 -5.7118 -5.0758 19 6 3.9652 -4.7633 -4.6888 20 6 4.3175 -3.6759 -3.6683 21 6 1.4960 -4.9636 0.1243 22 6 0.8896 -5.5205 -0.9861 23 6 0.2060 -6.7166 -0.8734 24 6 0.1209 -7.3514 0.3515 25 6 0.7228 -6.7919 1.4632 26 6 1.4102 -5.5980 1.3496 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5572 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.6289 -3.2450 -2.0457 31 1 6.9300 -4.3343 -2.9520 32 1 6.4695 -5.3029 -1.5315 33 1 5.2935 -6.9208 -2.9955 34 1 6.9893 -6.7429 -3.5148 35 1 3.2111 -5.4285 -4.2683 36 1 3.5787 -4.3006 -5.5969 37 1 3.4160 -3.1267 -3.3968 38 1 5.0435 -2.9897 -4.1045 39 1 0.9526 -5.0225 -1.9424 40 1 -0.2640 -7.1539 -1.7420 41 1 -0.4155 -8.2845 0.4402 42 1 0.6568 -7.2881 2.4202 43 1 1.8808 -5.1611 2.2180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151350084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:56 Heat of formation + Delta-G solvation = -15.740845 kcal Electronic energy + Delta-G solvation = -25263.544225 eV Core-core repulsion = 21820.124318 eV Total energy + Delta-G solvation = -3443.419907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57692 -40.05748 -37.65306 -36.77185 -34.80059 -33.24288 -32.21379 -31.71451 -30.81083 -30.30662 -26.75893 -24.75755 -24.34698 -23.80354 -23.32561 -21.65635 -20.81738 -19.61081 -18.60608 -17.77831 -17.42877 -17.26252 -16.55128 -16.41140 -16.17800 -15.89012 -15.63230 -15.15271 -14.96092 -14.83391 -14.68021 -14.34429 -14.20393 -14.04604 -13.85919 -13.67842 -13.45148 -13.36488 -12.92458 -12.72398 -12.61379 -12.48858 -12.14977 -12.02467 -11.87541 -11.59029 -11.32285 -11.23460 -10.83984 -10.59754 -10.22303 -9.78030 -9.71115 -9.52756 -8.69054 -8.20856 -6.30729 0.49764 0.55201 0.72622 1.37240 1.40705 1.47864 1.51701 1.64902 2.11708 2.39345 2.83072 3.02459 3.14400 3.66197 3.83595 3.99129 4.01444 4.05244 4.06101 4.19586 4.19973 4.31040 4.36993 4.43965 4.60638 4.64636 4.66245 4.75368 4.77042 4.78682 4.87654 5.11676 5.18944 5.27119 5.41527 5.46075 5.60358 5.60921 5.63580 5.75527 5.79220 5.97160 6.15481 6.20252 6.81838 6.95937 7.38278 7.55586 8.89934 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.005392 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.428627 B = 5191.381369 C = 7343.050082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.050 0.950 9 C 0.039 3.961 10 C 0.216 3.784 11 H 0.056 0.944 12 N -0.710 5.710 13 C 0.704 3.296 14 O -0.631 6.631 15 N -0.632 5.632 16 C 0.127 3.873 17 C -0.088 4.088 18 S -0.268 6.268 19 C -0.092 4.092 20 C 0.107 3.893 21 C -0.099 4.099 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.133 4.133 27 H 0.264 0.736 28 H 0.013 0.987 29 H 0.005 0.995 30 H 0.403 0.597 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -13.348 -9.497 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.069 0.931 9 C 0.001 3.999 10 C 0.111 3.889 11 H 0.074 0.926 12 N -0.365 5.365 13 C 0.405 3.595 14 O -0.513 6.513 15 N -0.369 5.369 16 C 0.002 3.998 17 C -0.238 4.238 18 S -0.042 6.042 19 C -0.241 4.241 20 C -0.018 4.018 21 C -0.100 4.100 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.151 4.151 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.023 0.977 30 H 0.241 0.759 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.719 -13.750 -9.791 18.168 hybrid contribution -0.518 1.619 1.164 2.060 sum 6.201 -12.131 -8.627 16.126 Atomic orbital electron populations 1.70070 1.07373 1.27662 1.51335 1.25738 0.95538 1.02498 0.94794 0.85552 0.78808 0.79717 0.77859 1.19600 1.19912 1.20851 1.21383 0.92840 0.91578 1.50661 0.93137 1.19130 0.93204 0.91060 0.96462 1.19601 0.91723 0.91917 0.85695 0.92579 1.45149 1.16237 1.61020 1.14134 1.16054 0.81137 0.78576 0.83707 1.90829 1.68977 1.57008 1.34451 1.47145 1.23140 1.59108 1.07509 1.21669 0.84011 0.92763 1.01319 1.23907 1.06098 0.99848 0.93903 1.86816 1.33860 1.69256 1.14274 1.23861 0.96908 0.99580 1.03785 1.21868 1.00523 0.94749 0.84653 1.20483 0.98353 0.96400 0.94768 1.21009 0.98065 0.96635 0.97941 1.21422 0.98947 0.94968 0.98913 1.21461 0.99901 1.00921 0.92392 1.21383 0.97487 0.95108 1.00130 1.21177 1.00408 0.96589 0.96949 0.92700 0.96885 0.97662 0.75892 0.88658 0.89361 0.90732 0.84651 0.89909 0.84319 0.88960 0.88245 0.86372 0.83692 0.83166 0.83885 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.23 13.29 21.45 0.28 -52.95 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.53 -28.37 8.84 25.60 0.23 -28.14 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.04 1.94 4.49 29.85 0.13 2.07 16 10 C 0.22 9.24 2.16 44.24 0.10 9.34 16 11 H 0.06 2.72 7.37 -2.39 -0.02 2.70 16 12 N -0.71 -26.25 3.94 -461.43 -1.82 -28.07 16 13 C 0.70 25.80 8.21 179.05 1.47 27.27 16 14 O -0.63 -28.02 15.28 -3.97 -0.06 -28.08 16 15 N -0.63 -17.28 2.78 -838.52 -2.33 -19.61 16 16 C 0.13 2.94 6.27 86.66 0.54 3.48 16 17 C -0.09 -1.69 6.68 72.24 0.48 -1.21 16 18 S -0.27 -5.18 22.29 -56.49 -1.26 -6.44 16 19 C -0.09 -1.63 6.67 72.06 0.48 -1.15 16 20 C 0.11 2.24 6.19 86.48 0.54 2.78 16 21 C -0.10 -3.76 4.91 -19.87 -0.10 -3.85 16 22 C -0.12 -3.88 9.32 22.27 0.21 -3.67 16 23 C -0.12 -3.37 10.05 22.27 0.22 -3.14 16 24 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 25 C -0.12 -3.52 10.05 22.27 0.22 -3.29 16 26 C -0.13 -4.73 9.67 22.27 0.22 -4.51 16 27 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.40 13.46 5.98 -92.71 -0.55 12.91 16 31 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.09 2.40 6.87 -2.39 -0.02 2.38 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.14 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 2.02 5.47 -2.39 -0.01 2.01 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.12 3.63 7.73 -2.91 -0.02 3.61 16 40 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.11 4.01 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -68.87 364.26 2.72 -66.15 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.45 Total: 29.78 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 5.43 Total: -5.90 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -3.86 Total: -100.63 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.26 Total: -6.44 kcal Total: -68.87 2.72 -66.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151350084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.409 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds