Wall clock time and date at job start Tue Mar 31 2020 12:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 N 1.46898 * 109.47006 * 120.00340 * 2 1 3 13 13 C 1.46900 * 111.00017 * 58.95602 * 12 2 1 14 14 C 1.46906 * 110.99833 * 294.99905 * 12 2 1 15 15 C 1.50703 * 109.46792 * 190.00272 * 14 12 2 16 16 O 1.21272 * 120.00192 * 359.97438 * 15 14 12 17 17 N 1.34779 * 119.99709 * 180.02562 * 15 14 12 18 18 C 1.38629 * 119.99653 * 179.97438 * 17 15 14 19 19 N 1.31083 * 126.23686 * 359.69021 * 18 17 15 20 20 N 1.28662 * 109.49399 * 179.87972 * 19 18 17 21 21 C 1.31395 * 109.34729 * 0.38854 * 20 19 18 22 22 C 1.46995 * 126.34491 * 179.74277 * 21 20 19 23 23 C 1.36326 * 125.96491 * 0.02562 * 22 21 20 24 24 C 1.40763 * 106.72025 * 180.02562 * 23 22 21 25 25 C 1.34828 * 107.08244 * 359.97438 * 24 23 22 26 26 O 1.34292 * 108.73232 * 359.73907 * 25 24 23 27 27 O 1.34676 * 126.23171 * 179.97438 * 18 17 15 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47238 * 60.00213 * 13 12 2 33 33 H 1.09001 * 109.46753 * 180.02562 * 13 12 2 34 34 H 1.09000 * 109.46832 * 299.99614 * 13 12 2 35 35 H 1.08992 * 109.47147 * 310.00436 * 14 12 2 36 36 H 1.09001 * 109.46991 * 70.00427 * 14 12 2 37 37 H 0.97003 * 120.00030 * 0.02562 * 17 15 14 38 38 H 1.08004 * 126.63951 * 359.97438 * 23 22 21 39 39 H 1.08005 * 126.45485 * 179.97438 * 24 23 22 40 40 H 1.07995 * 125.63157 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 7 2.0197 -0.6926 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6487 0.0391 2.4181 15 6 2.3680 -0.5573 3.6005 16 8 3.1155 -1.4992 3.4436 17 7 2.1796 -0.0444 4.8326 18 6 2.8408 -0.5933 5.9203 19 7 3.6678 -1.6100 5.8921 20 7 4.0971 -1.8474 7.0815 21 6 3.5526 -0.9940 7.9193 22 6 3.7785 -0.9331 9.3705 23 6 4.5943 -1.7558 10.0889 24 6 4.5068 -1.3412 11.4313 25 6 3.6533 -0.2982 11.4689 26 8 3.2200 -0.0504 10.2222 27 8 2.7464 -0.1825 7.1995 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 1.8763 -2.6151 0.3646 33 1 1.9054 -2.5656 2.1438 34 1 0.4385 -2.0743 1.2638 35 1 1.9297 1.0869 2.3125 36 1 0.5722 -0.0346 2.5726 37 1 1.5808 0.7083 4.9582 38 1 5.1915 -2.5687 9.7030 39 1 5.0257 -1.7767 12.2726 40 1 3.3690 0.2505 12.3546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153524539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:41 Heat of formation + Delta-G solvation = 37.259255 kcal Electronic energy + Delta-G solvation = -25784.618923 eV Core-core repulsion = 21797.204058 eV Total energy + Delta-G solvation = -3987.414865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -45.41309 -43.65203 -41.38957 -38.61890 -37.55053 -36.49361 -34.71355 -34.33523 -32.93017 -31.13377 -29.90933 -28.94512 -27.20830 -26.23455 -25.55383 -24.69860 -22.87047 -22.29056 -21.89895 -21.04537 -19.97242 -19.31759 -18.96016 -18.53646 -18.03139 -17.26940 -17.19348 -16.82587 -16.60619 -16.32789 -15.93255 -15.70048 -15.03143 -14.48183 -14.31630 -14.25275 -13.98404 -13.79951 -13.61543 -13.45797 -13.18149 -13.06804 -12.93529 -12.68841 -12.63527 -12.55958 -12.36827 -12.19487 -12.01298 -11.92344 -11.19746 -11.16378 -10.86314 -10.64104 -10.47435 -9.29501 -8.90142 -8.10644 -6.18931 -0.66185 0.02597 0.51002 1.19519 1.29498 1.41292 1.44679 1.52863 1.55857 1.66644 2.02831 2.44498 3.00338 3.19470 3.31027 3.40837 3.62533 3.84490 3.87820 3.94583 4.11062 4.28976 4.38167 4.57392 4.62533 4.71565 4.76549 4.87668 4.90566 4.92663 4.95322 5.13523 5.25798 5.39527 5.54432 5.70854 5.79001 5.83994 5.87362 6.16996 6.43873 6.63082 6.76932 6.92906 7.07923 7.49519 8.95223 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.045852 B = 0.002092 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.507482 B =13384.027585 C =13762.195396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.218 3.782 3 H 0.023 0.977 4 C -0.515 4.515 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.540 5.540 13 C 0.038 3.962 14 C 0.050 3.950 15 C 0.522 3.478 16 O -0.485 6.485 17 N -0.596 5.596 18 C 0.402 3.598 19 N -0.305 5.305 20 N -0.267 5.267 21 C 0.235 3.765 22 C 0.000 4.000 23 C -0.112 4.112 24 C -0.221 4.221 25 C 0.017 3.983 26 O -0.181 6.181 27 O -0.226 6.226 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.261 0.739 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.449 0.551 38 H 0.170 0.830 39 H 0.194 0.806 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 1.949 30.168 30.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.111 3.889 3 H 0.041 0.959 4 C -0.554 4.554 5 H 0.068 0.932 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.264 5.264 13 C -0.110 4.110 14 C -0.081 4.081 15 C 0.310 3.690 16 O -0.352 6.352 17 N -0.259 5.259 18 C 0.102 3.898 19 N -0.161 5.161 20 N -0.115 5.115 21 C 0.025 3.975 22 C -0.051 4.051 23 C -0.134 4.134 24 C -0.239 4.239 25 C -0.052 4.052 26 O -0.077 6.077 27 O -0.106 6.106 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.148 0.852 36 H 0.114 0.886 37 H 0.292 0.708 38 H 0.187 0.813 39 H 0.211 0.789 40 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 1.710 0.622 29.169 29.226 hybrid contribution -1.490 0.925 -0.689 1.884 sum 0.220 1.548 28.481 28.523 Atomic orbital electron populations 1.22246 0.99408 0.99516 1.01034 1.19148 0.90615 0.93295 0.85817 0.95888 1.21385 1.30493 1.12388 0.91130 0.93240 1.25553 0.95500 0.95859 1.01401 1.69972 1.37732 1.23822 1.23937 0.85583 0.78076 0.78612 0.79799 1.19990 1.20549 1.20714 1.61892 1.60657 1.02669 1.01166 1.22251 0.97008 0.90080 1.01626 1.21981 0.98975 1.00274 0.86866 1.21751 0.81968 0.83161 0.82156 1.90840 1.34614 1.26642 1.83092 1.42881 1.45599 1.36369 1.01059 1.23532 0.94708 0.91419 0.80129 1.75275 1.13557 1.14313 1.12924 1.74799 1.20887 1.20870 0.94939 1.23661 0.92197 0.89556 0.92045 1.17723 1.05884 0.98704 0.82761 1.22260 0.97766 0.99568 0.93758 1.22272 1.04265 1.00244 0.97131 1.25469 0.96184 0.98785 0.84771 1.84132 1.57686 1.47620 1.18268 1.84871 1.56531 1.51710 1.17496 0.95071 0.93831 0.91797 0.92925 0.92927 0.91914 0.95456 0.85201 0.88577 0.70838 0.81271 0.78922 0.72318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.09 8.28 71.98 0.60 -6.49 16 2 C 0.22 10.32 2.34 44.17 0.10 10.43 16 3 H 0.02 1.18 8.03 -2.39 -0.02 1.16 16 4 C -0.52 -28.02 7.94 25.60 0.20 -27.81 16 5 H 0.05 2.80 6.75 -2.91 -0.02 2.78 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.91 -50.61 11.32 21.45 0.24 -50.36 16 8 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.54 -22.33 4.48 -906.03 -4.06 -26.39 16 13 C 0.04 1.56 8.53 127.69 1.09 2.65 16 14 C 0.05 1.48 4.89 85.56 0.42 1.90 16 15 C 0.52 15.97 7.48 87.66 0.66 16.63 16 16 O -0.49 -19.77 13.04 -3.01 -0.04 -19.81 16 17 N -0.60 -13.83 5.39 -423.14 -2.28 -16.11 16 18 C 0.40 11.70 9.07 178.91 1.62 13.32 16 19 N -0.31 -10.99 10.44 -173.13 -1.81 -12.80 16 20 N -0.27 -8.65 12.23 -166.40 -2.04 -10.69 16 21 C 0.23 6.34 8.27 87.06 0.72 7.06 16 22 C 0.00 0.00 7.24 24.12 0.17 0.17 16 23 C -0.11 -1.73 10.83 22.44 0.24 -1.48 16 24 C -0.22 -1.81 10.88 22.10 0.24 -1.57 16 25 C 0.02 0.12 12.08 67.04 0.81 0.93 16 26 O -0.18 -3.00 10.68 -7.15 -0.08 -3.08 16 27 O -0.23 -5.92 10.92 -14.71 -0.16 -6.08 16 28 H 0.03 1.34 6.39 -2.39 -0.02 1.32 16 29 H 0.04 1.54 6.75 -2.39 -0.02 1.52 16 30 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 31 H 0.26 13.81 8.31 -92.70 -0.77 13.04 16 32 H 0.05 2.36 6.53 -2.39 -0.02 2.34 16 33 H 0.06 2.51 5.82 -2.39 -0.01 2.49 16 34 H 0.03 1.02 6.28 -2.39 -0.01 1.01 16 35 H 0.13 3.27 8.00 -2.39 -0.02 3.25 16 36 H 0.10 2.33 6.94 -2.39 -0.02 2.31 16 37 H 0.45 5.86 8.82 -92.71 -0.82 5.05 16 38 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 40 H 0.26 -0.88 8.06 -2.91 -0.02 -0.91 16 Total: -1.00 -76.46 341.35 -0.57 -77.03 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.30 Total: 5.32 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 7.33 Total: 17.03 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -9.94 Total: -116.35 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.28 Total: -28.97 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -76.46 -0.57 -77.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153524539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.288 kcal (2) G-P(sol) polarization free energy of solvation -76.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds