Wall clock time and date at job start Tue Mar 31 2020 12:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.46921 * 2 1 4 4 C 1.46499 * 119.99934 * 269.99692 * 3 2 1 5 5 C 1.50700 * 109.46912 * 270.00300 * 4 3 2 6 6 H 1.08000 * 120.00441 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00073 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99555 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00282 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47348 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47406 * 119.99805 * 9 7 5 12 12 H 1.48509 * 109.47027 * 239.99695 * 9 7 5 13 13 C 1.34777 * 120.00001 * 90.00085 * 3 2 1 14 14 O 1.21593 * 119.99923 * 179.97438 * 13 3 2 15 15 N 1.34777 * 120.00128 * 359.97438 * 13 3 2 16 16 C 1.40194 * 119.99945 * 180.27819 * 15 13 3 17 17 C 1.40400 * 125.97290 * 359.43673 * 16 15 13 18 18 C 1.35239 * 107.86845 * 179.86648 * 17 16 15 19 19 N 1.34968 * 107.85956 * 0.39102 * 18 17 16 20 20 C 1.46493 * 125.97621 * 179.71462 * 19 18 17 21 21 C 1.53002 * 109.46960 * 125.02157 * 20 19 18 22 22 F 1.39896 * 109.47205 * 59.99750 * 21 20 19 23 23 F 1.39905 * 109.46947 * 179.97438 * 21 20 19 24 24 F 1.39902 * 109.47024 * 299.99658 * 21 20 19 25 25 N 1.31208 * 125.97117 * 179.74638 * 16 15 13 26 26 H 1.09001 * 109.47466 * 300.00078 * 1 2 3 27 27 H 1.08999 * 109.47471 * 60.00352 * 1 2 3 28 28 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46782 * 239.99623 * 2 1 3 30 30 H 1.09005 * 109.46633 * 119.99658 * 2 1 3 31 31 H 1.08996 * 109.47092 * 30.00115 * 4 3 2 32 32 H 1.08998 * 109.47416 * 150.00325 * 4 3 2 33 33 H 0.96996 * 119.99369 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99727 * 359.97438 * 15 13 3 35 35 H 1.08006 * 126.06402 * 0.02562 * 17 16 15 36 36 H 1.08007 * 126.07492 * 180.11339 * 18 17 16 37 37 H 1.09001 * 109.47207 * 245.01894 * 20 19 18 38 38 H 1.09001 * 109.47468 * 5.02133 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8349 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1495 2.3903 -2.8774 8 7 3.3494 3.1264 -3.6176 9 14 5.9134 2.0962 -3.4169 10 1 6.6008 1.2402 -2.4169 11 1 5.9205 1.4180 -4.7380 12 1 6.6216 3.3971 -3.5246 13 6 2.2429 2.0165 1.1672 14 8 2.6486 3.1628 1.1672 15 7 2.0178 1.3814 2.3344 16 6 2.2459 2.0443 3.5485 17 6 2.7165 3.3590 3.6946 18 6 2.7984 3.6257 5.0179 19 7 2.4044 2.5222 5.6878 20 6 2.3457 2.3747 7.1441 21 6 0.9373 1.9420 7.5565 22 9 0.6291 0.7191 6.9510 23 9 0.8814 1.8005 8.9472 24 9 0.0137 2.9104 7.1483 25 7 2.0624 1.5425 4.7469 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8901 31 1 1.5817 1.6876 -2.0284 32 1 2.0955 3.1410 -1.1385 33 1 3.6755 3.5169 -4.4434 34 1 1.6938 0.4671 2.3344 35 1 2.9660 4.0378 2.8925 36 1 3.1256 4.5551 5.4603 37 1 3.0653 1.6202 7.4621 38 1 2.5859 3.3275 7.6159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160680707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:14 Heat of formation + Delta-G solvation = -105.982692 kcal Electronic energy + Delta-G solvation = -27060.726150 eV Core-core repulsion = 22525.243108 eV Total energy + Delta-G solvation = -4535.483042 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.12295 -48.67618 -48.59367 -42.43066 -41.02322 -37.20881 -36.25758 -34.89220 -33.90957 -31.66709 -31.15231 -29.53538 -28.57189 -25.37411 -24.58984 -24.20549 -22.72043 -21.96705 -20.61265 -19.63797 -19.50867 -19.03199 -18.83270 -18.51720 -18.04707 -17.21148 -16.66393 -16.47449 -15.97926 -15.67692 -15.48655 -15.44542 -15.19527 -15.04177 -14.78512 -14.73942 -14.72761 -14.54979 -14.43592 -13.93547 -13.80941 -13.60568 -13.30176 -13.14300 -13.03344 -12.70730 -12.51245 -12.20145 -11.97768 -11.89982 -11.79174 -11.65427 -10.93400 -10.60872 -9.92596 -9.63823 -9.17276 -8.18762 -6.32830 0.66318 0.91659 1.39336 1.41540 1.52765 1.58193 1.70806 1.84545 2.36877 2.46143 2.68115 2.91285 2.96110 3.11322 3.21534 3.72976 3.93150 4.04209 4.12714 4.29684 4.35114 4.46210 4.57360 4.82568 4.86248 4.93927 5.01221 5.20316 5.22802 5.34720 5.59742 5.67577 5.82292 5.91996 5.98928 6.09374 6.54941 6.75832 7.05465 7.33417 7.58232 8.88161 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.023536 B = 0.002874 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.379341 B = 9741.119683 C =10353.581011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.608 5.608 4 C 0.279 3.721 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.705 3.295 14 O -0.604 6.604 15 N -0.642 5.642 16 C 0.314 3.686 17 C -0.298 4.298 18 C 0.101 3.899 19 N -0.384 5.384 20 C 0.103 3.897 21 C 0.439 3.561 22 F -0.185 7.185 23 F -0.174 7.174 24 F -0.192 7.192 25 N -0.340 5.340 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.003 0.997 33 H 0.267 0.733 34 H 0.418 0.582 35 H 0.149 0.851 36 H 0.232 0.768 37 H 0.152 0.848 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -4.232 24.205 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.343 5.343 4 C 0.158 3.842 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.406 3.594 14 O -0.482 6.482 15 N -0.296 5.296 16 C 0.057 3.943 17 C -0.328 4.328 18 C -0.042 4.042 19 N -0.169 5.169 20 C -0.020 4.020 21 C 0.384 3.616 22 F -0.166 7.166 23 F -0.155 7.155 24 F -0.174 7.174 25 N -0.170 5.170 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.021 0.979 33 H 0.076 0.924 34 H 0.257 0.743 35 H 0.167 0.833 36 H 0.249 0.751 37 H 0.170 0.830 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.550 -4.366 24.722 25.354 hybrid contribution 0.447 0.199 -1.228 1.322 sum -3.103 -4.167 23.494 24.062 Atomic orbital electron populations 1.22171 0.94505 1.03654 1.01689 1.21727 0.95334 0.81431 1.03890 1.47471 1.67184 1.15110 1.04506 1.18709 0.95361 0.91560 0.78592 1.21739 0.97871 1.31893 1.06449 0.93001 1.25799 1.02184 0.94507 0.96414 1.70054 1.37579 1.34231 1.14823 0.85383 0.79251 0.77955 0.78274 1.19377 1.19537 1.20739 1.15828 0.78887 0.84259 0.80468 1.90790 1.53038 1.18388 1.85958 1.41752 1.69385 1.17416 1.01065 1.19202 0.96965 0.92505 0.85667 1.21971 1.15610 0.97327 0.97912 1.23177 0.97141 0.93133 0.90774 1.47865 1.54226 1.09846 1.04957 1.23225 0.91635 1.11303 0.75795 1.21077 0.90372 0.75270 0.74888 1.93242 1.94430 1.45611 1.83325 1.93224 1.96939 1.95701 1.29668 1.93206 1.70224 1.63540 1.90388 1.77409 1.30573 1.13422 0.95566 0.93122 0.93454 0.88368 0.89641 0.89459 0.95189 0.97854 0.92410 0.74255 0.83322 0.75146 0.83029 0.79253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.24 71.98 0.74 -3.47 16 2 C 0.10 3.08 5.89 86.38 0.51 3.59 16 3 N -0.61 -26.24 2.46 -844.21 -2.07 -28.31 16 4 C 0.28 14.94 5.16 85.63 0.44 15.38 16 5 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 9 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 C 0.70 31.08 8.25 179.05 1.48 32.56 16 14 O -0.60 -31.50 13.05 -4.01 -0.05 -31.55 16 15 N -0.64 -22.67 5.32 -321.23 -1.71 -24.37 16 16 C 0.31 10.76 8.11 133.31 1.08 11.84 16 17 C -0.30 -9.78 9.61 22.10 0.21 -9.56 16 18 C 0.10 2.10 11.44 83.52 0.96 3.05 16 19 N -0.38 -7.86 3.60 -348.11 -1.25 -9.12 16 20 C 0.10 0.99 6.50 86.38 0.56 1.55 16 21 C 0.44 6.93 3.28 71.98 0.24 7.17 16 22 F -0.18 -4.14 16.28 44.97 0.73 -3.41 16 23 F -0.17 -2.37 17.32 44.97 0.78 -1.59 16 24 F -0.19 -3.88 17.24 44.97 0.78 -3.10 16 25 N -0.34 -9.96 11.52 -54.44 -0.63 -10.58 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 2.73 8.07 -2.39 -0.02 2.71 16 30 H 0.09 2.21 6.36 -2.38 -0.02 2.19 16 31 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 32 H 0.00 0.20 7.42 -2.39 -0.02 0.19 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.42 12.17 6.56 -92.71 -0.61 11.56 16 35 H 0.15 5.90 5.91 -2.91 -0.02 5.88 16 36 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.19 -0.08 8.07 -2.39 -0.02 -0.10 16 Total: -1.00 -80.67 341.43 6.31 -74.36 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.51 Total: 13.71 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 6.91 Total: 32.39 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -5.38 Total: -127.63 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.05 Total: -31.55 kcal Atomic # 9 Polarization: -10.39 SS G_CDS: 2.29 Total: -8.10 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -80.67 6.31 -74.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160680707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.621 kcal (2) G-P(sol) polarization free energy of solvation -80.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds