Wall clock time and date at job start Tue Mar 31 2020 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99668 * 2 1 4 4 H 1.48502 * 109.47011 * 269.99941 * 3 2 1 5 5 H 1.48506 * 109.47074 * 29.99388 * 3 2 1 6 6 H 1.48492 * 109.47554 * 149.99639 * 3 2 1 7 7 C 1.37874 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00154 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46871 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46944 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00226 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99523 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00166 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99956 * 179.97438 * 15 13 12 17 17 H 1.09000 * 108.52222 * 326.98296 * 16 15 13 18 18 C 1.51886 * 108.67607 * 208.96572 * 16 15 13 19 19 C 1.53512 * 108.97259 * 178.14911 * 18 16 15 20 20 S 1.81601 * 107.36404 * 72.45810 * 19 18 16 21 21 C 1.76458 * 102.65224 * 313.61000 * 20 19 18 22 22 C 1.39630 * 117.73338 * 193.14423 * 21 20 19 23 23 C 1.37741 * 120.61962 * 181.43498 * 22 21 20 24 24 C 1.38343 * 119.51818 * 0.02562 * 23 22 21 25 25 C 1.37770 * 120.00995 * 359.61658 * 24 23 22 26 26 C 1.38172 * 122.29788 * 13.84436 * 21 20 19 27 27 H 0.96992 * 120.00717 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46909 * 60.00709 * 9 7 2 29 29 H 1.08994 * 109.47682 * 300.00595 * 9 7 2 30 30 H 1.08992 * 109.47170 * 60.00527 * 10 9 7 31 31 H 1.09003 * 109.46928 * 300.00217 * 10 9 7 32 32 H 1.09002 * 109.47590 * 60.00069 * 11 10 9 33 33 H 1.09003 * 109.47249 * 299.99686 * 11 10 9 34 34 H 0.97001 * 119.99891 * 0.02562 * 12 11 10 35 35 H 0.97001 * 119.99950 * 359.97438 * 15 13 12 36 36 H 1.08998 * 109.55946 * 58.30085 * 18 16 15 37 37 H 1.09004 * 109.63955 * 298.04464 * 18 16 15 38 38 H 1.09000 * 109.87894 * 312.99150 * 19 18 16 39 39 H 1.08999 * 109.93945 * 191.95446 * 19 18 16 40 40 H 1.07998 * 119.69410 * 1.48011 * 22 21 20 41 41 H 1.07997 * 120.24178 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.99978 * 179.59670 * 24 23 22 43 43 H 1.08000 * 119.48053 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4463 2.6527 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 6 5.5517 -2.6362 0.0001 12 7 6.0401 -4.0174 0.0009 13 6 7.3652 -4.2636 0.0005 14 8 8.1552 -3.3394 -0.0009 15 7 7.8145 -5.5343 0.0007 16 6 9.2549 -5.8019 -0.0003 17 1 9.7532 -5.0133 -0.5641 18 6 9.5026 -7.1287 -0.6968 19 6 11.0140 -7.3937 -0.7428 20 16 11.5417 -7.8162 0.9427 21 6 10.7553 -6.5727 1.9170 22 6 11.1699 -6.4268 3.2423 23 6 10.5761 -5.4949 4.0647 24 6 9.5593 -4.6983 3.5693 25 6 9.1528 -4.8346 2.2600 26 6 9.7510 -5.7672 1.4154 27 1 -0.4851 0.8399 -0.0004 28 1 3.8752 -0.6795 0.8895 29 1 3.8746 -0.6805 -0.8904 30 1 3.6581 -3.1503 -0.8896 31 1 3.6587 -3.1500 0.8903 32 1 5.9150 -2.1223 0.8901 33 1 5.9150 -2.1224 -0.8899 34 1 5.4098 -4.7547 0.0009 35 1 7.1842 -6.2716 0.0014 36 1 9.1085 -7.0870 -1.7122 37 1 9.0085 -7.9293 -0.1463 38 1 11.5370 -6.4994 -1.0817 39 1 11.2255 -8.2241 -1.4164 40 1 11.9641 -7.0500 3.6261 41 1 10.9013 -5.3875 5.0889 42 1 9.0838 -3.9696 4.2091 43 1 8.3585 -4.2079 1.8821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171741344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:33 Heat of formation + Delta-G solvation = -11.446920 kcal Electronic energy + Delta-G solvation = -23843.709580 eV Core-core repulsion = 20400.475871 eV Total energy + Delta-G solvation = -3443.233709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77835 -39.07909 -36.75557 -35.44618 -33.55500 -33.00461 -31.46993 -31.02354 -30.82173 -27.56171 -26.12557 -23.52825 -22.96482 -22.83287 -21.08325 -20.94439 -20.34174 -18.31690 -18.09071 -17.01665 -16.58398 -16.31743 -15.88003 -15.53986 -15.33263 -14.65132 -14.51551 -14.33586 -13.97290 -13.84803 -13.63765 -13.49447 -13.12594 -13.03507 -12.74917 -12.67138 -12.07493 -11.94125 -11.78093 -11.58994 -11.14659 -11.10715 -10.91030 -10.43347 -10.38736 -10.05750 -9.93309 -9.85658 -9.71448 -9.48423 -9.25205 -8.98212 -8.81140 -8.57442 -7.71885 -6.08206 -4.07124 0.91845 1.13166 1.22660 1.99762 2.58291 3.13281 3.29905 3.37651 3.41788 3.49043 4.04714 4.14357 4.28377 4.41662 4.42721 4.68454 4.75930 4.80802 5.00759 5.09709 5.13773 5.25589 5.25898 5.38709 5.45113 5.50806 5.61033 5.63984 5.76163 5.98427 6.00782 6.12686 6.26031 6.32208 6.40335 6.42361 6.61700 6.69235 6.77057 6.88351 7.20458 7.33792 7.73494 7.95903 8.47718 8.54528 8.95453 9.53976 11.05006 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.002341 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.275462 B =11956.392936 C =12596.628376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.132 3.868 12 N -0.739 5.739 13 C 0.700 3.300 14 O -0.588 6.588 15 N -0.744 5.744 16 C 0.203 3.797 17 H 0.102 0.898 18 C -0.129 4.129 19 C -0.100 4.100 20 S -0.128 6.128 21 C -0.071 4.071 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.086 4.086 26 C -0.100 4.100 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.396 0.604 35 H 0.398 0.602 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.771 -18.437 2.122 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.393 5.393 13 C 0.401 3.599 14 O -0.466 6.466 15 N -0.400 5.400 16 C 0.097 3.903 17 H 0.120 0.880 18 C -0.169 4.169 19 C -0.249 4.249 20 S 0.114 5.886 21 C -0.184 4.184 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.107 4.107 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.230 0.770 35 H 0.232 0.768 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 25.063 -18.385 2.331 31.171 hybrid contribution -1.109 1.327 -0.287 1.753 sum 23.955 -17.058 2.044 29.479 Atomic orbital electron populations 1.69906 1.06321 1.26985 1.50966 1.25028 0.94749 0.99250 0.94455 0.86777 0.80412 0.83519 0.78600 1.20243 1.21366 1.18869 1.21087 0.89297 0.94500 1.51142 0.91026 1.19497 0.97265 0.91415 0.96691 1.21708 0.90594 1.01058 1.01732 1.21549 0.95796 0.79859 1.01902 1.45372 1.04661 1.10283 1.79020 1.15982 0.83173 0.83056 0.77725 1.90956 1.54911 1.43010 1.57743 1.45185 1.06912 1.06697 1.81164 1.19256 0.81069 0.98026 0.91988 0.88030 1.21858 0.95101 0.97272 1.02647 1.23702 0.98306 1.06604 0.96313 1.85509 1.64342 1.37076 1.01677 1.21279 0.99660 0.99908 0.97559 1.20832 1.00643 0.99559 0.92022 1.21070 0.96194 0.95420 0.99547 1.21171 0.97629 0.99697 0.95843 1.21619 0.99427 0.96293 0.93269 1.19958 0.96683 0.97711 0.96339 0.92679 0.96280 0.96727 0.92130 0.92103 0.91897 0.91863 0.77009 0.76772 0.88849 0.89557 0.88585 0.86407 0.85642 0.85486 0.85743 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 11 C 0.13 2.11 5.67 -4.04 -0.02 2.08 16 12 N -0.74 -9.51 5.56 -65.22 -0.36 -9.87 16 13 C 0.70 9.44 6.66 -86.92 -0.58 8.86 16 14 O -0.59 -10.25 14.47 5.29 0.08 -10.17 16 15 N -0.74 -7.23 4.65 -60.69 -0.28 -7.52 16 16 C 0.20 1.95 2.37 -69.96 -0.17 1.79 16 17 H 0.10 1.17 7.45 -51.93 -0.39 0.79 16 18 C -0.13 -0.82 5.26 -27.03 -0.14 -0.97 16 19 C -0.10 -0.61 6.52 37.42 0.24 -0.37 16 20 S -0.13 -1.09 21.99 -107.50 -2.36 -3.45 16 21 C -0.07 -0.75 6.05 -39.09 -0.24 -0.98 16 22 C -0.11 -1.07 9.65 -39.24 -0.38 -1.44 16 23 C -0.10 -0.99 10.06 -39.72 -0.40 -1.39 16 24 C -0.12 -1.38 10.03 -39.71 -0.40 -1.77 16 25 C -0.09 -1.09 8.81 -39.35 -0.35 -1.44 16 26 C -0.10 -1.12 5.63 -104.56 -0.59 -1.71 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 4.03 8.49 -40.82 -0.35 3.68 16 35 H 0.40 2.79 8.62 -40.82 -0.35 2.44 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.53 8.04 -51.93 -0.42 0.11 16 38 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.13 1.03 8.05 -52.49 -0.42 0.61 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.13 1.94 4.29 -52.49 -0.23 1.71 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -33.38 359.06 -11.42 -44.80 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.30 Total: 3.61 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.70 Total: -12.93 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.13 Total: -44.19 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.36 Total: -3.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.38 -11.42 -44.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171741344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.355 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds