Wall clock time and date at job start Tue Mar 31 2020 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99668 * 2 1 4 4 H 1.48502 * 109.47011 * 269.99941 * 3 2 1 5 5 H 1.48506 * 109.47074 * 29.99388 * 3 2 1 6 6 H 1.48492 * 109.47554 * 149.99639 * 3 2 1 7 7 C 1.37874 * 120.00555 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00154 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46871 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46944 * 179.97438 * 11 10 9 13 13 C 1.34781 * 120.00226 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99523 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00166 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99956 * 179.97438 * 15 13 12 17 17 H 1.09000 * 108.52222 * 326.98296 * 16 15 13 18 18 C 1.51886 * 108.67607 * 208.96572 * 16 15 13 19 19 C 1.53512 * 108.97259 * 178.14911 * 18 16 15 20 20 S 1.81601 * 107.36404 * 72.45810 * 19 18 16 21 21 C 1.76458 * 102.65224 * 313.61000 * 20 19 18 22 22 C 1.39630 * 117.73338 * 193.14423 * 21 20 19 23 23 C 1.37741 * 120.61962 * 181.43498 * 22 21 20 24 24 C 1.38343 * 119.51818 * 0.02562 * 23 22 21 25 25 C 1.37770 * 120.00995 * 359.61658 * 24 23 22 26 26 C 1.38172 * 122.29788 * 13.84436 * 21 20 19 27 27 H 0.96992 * 120.00717 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46909 * 60.00709 * 9 7 2 29 29 H 1.08994 * 109.47682 * 300.00595 * 9 7 2 30 30 H 1.08992 * 109.47170 * 60.00527 * 10 9 7 31 31 H 1.09003 * 109.46928 * 300.00217 * 10 9 7 32 32 H 1.09002 * 109.47590 * 60.00069 * 11 10 9 33 33 H 1.09003 * 109.47249 * 299.99686 * 11 10 9 34 34 H 0.97001 * 119.99891 * 0.02562 * 12 11 10 35 35 H 0.97001 * 119.99950 * 359.97438 * 15 13 12 36 36 H 1.08998 * 109.55946 * 58.30085 * 18 16 15 37 37 H 1.09004 * 109.63955 * 298.04464 * 18 16 15 38 38 H 1.09000 * 109.87894 * 312.99150 * 19 18 16 39 39 H 1.08999 * 109.93945 * 191.95446 * 19 18 16 40 40 H 1.07998 * 119.69410 * 1.48011 * 22 21 20 41 41 H 1.07997 * 120.24178 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.99978 * 179.59670 * 24 23 22 43 43 H 1.08000 * 119.48053 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4463 2.6527 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 6 5.5517 -2.6362 0.0001 12 7 6.0401 -4.0174 0.0009 13 6 7.3652 -4.2636 0.0005 14 8 8.1552 -3.3394 -0.0009 15 7 7.8145 -5.5343 0.0007 16 6 9.2549 -5.8019 -0.0003 17 1 9.7532 -5.0133 -0.5641 18 6 9.5026 -7.1287 -0.6968 19 6 11.0140 -7.3937 -0.7428 20 16 11.5417 -7.8162 0.9427 21 6 10.7553 -6.5727 1.9170 22 6 11.1699 -6.4268 3.2423 23 6 10.5761 -5.4949 4.0647 24 6 9.5593 -4.6983 3.5693 25 6 9.1528 -4.8346 2.2600 26 6 9.7510 -5.7672 1.4154 27 1 -0.4851 0.8399 -0.0004 28 1 3.8752 -0.6795 0.8895 29 1 3.8746 -0.6805 -0.8904 30 1 3.6581 -3.1503 -0.8896 31 1 3.6587 -3.1500 0.8903 32 1 5.9150 -2.1223 0.8901 33 1 5.9150 -2.1224 -0.8899 34 1 5.4098 -4.7547 0.0009 35 1 7.1842 -6.2716 0.0014 36 1 9.1085 -7.0870 -1.7122 37 1 9.0085 -7.9293 -0.1463 38 1 11.5370 -6.4994 -1.0817 39 1 11.2255 -8.2241 -1.4164 40 1 11.9641 -7.0500 3.6261 41 1 10.9013 -5.3875 5.0889 42 1 9.0838 -3.9696 4.2091 43 1 8.3585 -4.2079 1.8821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171741344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:33 Heat of formation + Delta-G solvation = -33.063607 kcal Electronic energy + Delta-G solvation = -23844.646950 eV Core-core repulsion = 20400.475871 eV Total energy + Delta-G solvation = -3444.171079 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71788 -39.98639 -37.63054 -36.76828 -35.16927 -34.13422 -33.04365 -31.80464 -31.67380 -29.06644 -27.12541 -24.53915 -24.19270 -23.67666 -22.26993 -21.87793 -21.70602 -19.37669 -18.95656 -18.81069 -17.70869 -17.12225 -16.67997 -16.51246 -16.47304 -16.08155 -15.73109 -15.41202 -15.28725 -14.77225 -14.62073 -14.45263 -14.16820 -13.91814 -13.84147 -13.74368 -13.53021 -13.33353 -12.73726 -12.69814 -12.43657 -12.37187 -11.93514 -11.82426 -11.78230 -11.59090 -11.35169 -11.31549 -11.07984 -10.76187 -10.66080 -10.48391 -9.90561 -9.77872 -8.39364 -8.29418 -6.33202 0.13825 0.31464 0.59159 1.36800 1.37500 1.38610 1.50279 1.62260 2.07196 2.36281 2.67384 3.06445 3.20911 3.45626 3.62985 3.82638 3.95730 4.09455 4.10742 4.17985 4.22109 4.35200 4.39709 4.49677 4.51396 4.64743 4.73376 4.82788 4.88948 4.90357 4.95817 4.99993 5.04108 5.20994 5.32115 5.39990 5.46397 5.51683 5.56457 5.57633 5.65156 5.89960 5.95408 6.27512 6.74921 7.03916 7.31696 7.51534 8.86972 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.002341 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.275462 B =11956.392936 C =12596.628376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.099 4.099 11 C 0.147 3.853 12 N -0.731 5.731 13 C 0.701 3.299 14 O -0.628 6.628 15 N -0.726 5.726 16 C 0.204 3.796 17 H 0.080 0.920 18 C -0.120 4.120 19 C -0.096 4.096 20 S -0.131 6.131 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.101 4.101 24 C -0.137 4.137 25 C -0.111 4.111 26 C -0.110 4.110 27 H 0.266 0.734 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.411 0.589 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.130 0.870 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.932 -19.694 1.818 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.137 4.137 11 C 0.023 3.977 12 N -0.387 5.387 13 C 0.402 3.598 14 O -0.510 6.510 15 N -0.382 5.382 16 C 0.098 3.902 17 H 0.098 0.902 18 C -0.159 4.159 19 C -0.244 4.244 20 S 0.111 5.889 21 C -0.194 4.194 22 C -0.137 4.137 23 C -0.121 4.121 24 C -0.158 4.158 25 C -0.131 4.131 26 C -0.117 4.117 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.171 0.829 42 H 0.148 0.852 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 27.225 -19.715 2.025 33.675 hybrid contribution -1.779 1.613 -0.182 2.408 sum 25.446 -18.102 1.843 31.282 Atomic orbital electron populations 1.70052 1.08209 1.28123 1.52744 1.25978 0.95582 1.03419 0.94266 0.85709 0.79528 0.78558 0.79188 1.19235 1.21097 1.17126 1.21461 0.91902 0.93236 1.50157 0.94388 1.19462 0.94044 0.94698 0.96809 1.21467 0.91982 0.98061 1.02169 1.21144 0.93993 0.81399 1.01181 1.45071 1.04971 1.09614 1.78994 1.16053 0.82749 0.83703 0.77342 1.90928 1.55906 1.44637 1.59518 1.44993 1.07567 1.05816 1.79779 1.19338 0.80291 0.99237 0.91343 0.90182 1.21834 0.95529 0.95247 1.03334 1.23841 0.97866 1.07734 0.94994 1.85497 1.64156 1.36047 1.03183 1.21528 0.99415 1.00163 0.98331 1.21171 1.00878 0.99645 0.91992 1.21360 0.95306 0.94637 1.00765 1.21349 0.98407 1.00398 0.95612 1.21592 0.99975 0.97139 0.94380 1.20091 0.97105 0.97698 0.96838 0.92521 0.96142 0.96183 0.91624 0.91798 0.92806 0.92547 0.75260 0.74923 0.86835 0.88768 0.88609 0.83578 0.83911 0.82910 0.85221 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.24 13.96 21.45 0.30 -58.95 16 2 C 0.00 0.25 5.47 84.65 0.46 0.72 16 3 Si 0.95 44.28 27.47 68.60 1.88 46.16 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.53 -29.86 9.66 25.60 0.25 -29.61 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 10 C -0.10 -3.48 5.27 30.59 0.16 -3.32 16 11 C 0.15 4.58 5.67 86.38 0.49 5.07 16 12 N -0.73 -18.09 5.56 -478.52 -2.66 -20.75 16 13 C 0.70 18.58 6.66 179.05 1.19 19.77 16 14 O -0.63 -22.17 14.47 -4.00 -0.06 -22.23 16 15 N -0.73 -13.32 4.65 -464.17 -2.16 -15.47 16 16 C 0.20 3.72 2.37 43.67 0.10 3.83 16 17 H 0.08 1.84 7.45 -2.39 -0.02 1.82 16 18 C -0.12 -1.22 5.26 30.40 0.16 -1.06 16 19 C -0.10 -0.91 6.52 72.15 0.47 -0.44 16 20 S -0.13 -1.95 21.99 -56.49 -1.24 -3.19 16 21 C -0.08 -1.62 6.05 22.59 0.14 -1.48 16 22 C -0.11 -2.10 9.65 22.49 0.22 -1.88 16 23 C -0.10 -1.84 10.06 22.18 0.22 -1.61 16 24 C -0.14 -3.06 10.03 22.18 0.22 -2.84 16 25 C -0.11 -2.84 8.81 22.42 0.20 -2.64 16 26 C -0.11 -2.42 5.63 -19.82 -0.11 -2.53 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 29 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.41 7.69 8.49 -92.71 -0.79 6.90 16 35 H 0.41 4.99 8.62 -92.71 -0.80 4.19 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.87 8.04 -2.38 -0.02 0.85 16 38 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 39 H 0.15 0.61 8.14 -2.39 -0.02 0.60 16 40 H 0.14 2.05 8.05 -2.91 -0.02 2.03 16 41 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.11 3.36 4.29 -2.91 -0.01 3.34 16 Total: -1.00 -73.97 359.06 -0.25 -74.22 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.61 Total: 18.68 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.29 Total: -18.47 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -4.52 Total: -95.17 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -1.24 Total: -3.19 kcal Total: -73.97 -0.25 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171741344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.153 kcal (2) G-P(sol) polarization free energy of solvation -73.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds