Wall clock time and date at job start Tue Mar 31 2020 13:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48493 * 109.47319 * 240.00045 * 3 2 1 5 5 H 1.48498 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46543 * 120.00139 * 3 2 1 7 7 C 1.38800 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00304 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99746 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99773 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46821 * 180.02562 * 10 9 7 12 12 C 1.53010 * 109.46979 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47077 * 181.89680 * 12 11 10 14 14 C 1.47190 * 110.99520 * 305.51186 * 13 12 11 15 15 C 1.52992 * 108.71368 * 192.38141 * 14 13 12 16 16 N 1.46012 * 110.04194 * 309.69446 * 15 14 13 17 17 C 1.33713 * 122.92448 * 18.15784 * 16 15 14 18 18 O 1.21279 * 118.62087 * 178.31201 * 17 16 15 19 19 C 1.46895 * 111.00166 * 68.40227 * 13 12 11 20 20 H 1.08999 * 109.39016 * 306.48924 * 19 13 12 21 21 C 1.50704 * 109.38653 * 66.18088 * 19 13 12 22 22 C 1.38231 * 119.99705 * 39.72435 * 21 19 13 23 23 C 1.38238 * 119.99287 * 179.76509 * 22 21 19 24 24 C 1.38234 * 120.00464 * 0.50837 * 23 22 21 25 25 C 1.38231 * 119.99897 * 359.74759 * 24 23 22 26 26 C 1.38235 * 119.99623 * 219.99964 * 21 19 13 27 27 H 0.96996 * 120.00287 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47722 * 60.00097 * 10 9 7 29 29 H 1.09006 * 109.47208 * 299.99783 * 10 9 7 30 30 H 1.08994 * 109.47451 * 59.99818 * 11 10 9 31 31 H 1.08997 * 109.47240 * 299.99302 * 11 10 9 32 32 H 1.08996 * 109.46954 * 61.89150 * 12 11 10 33 33 H 1.09002 * 109.46456 * 301.89038 * 12 11 10 34 34 H 1.09001 * 109.59397 * 312.13580 * 14 13 12 35 35 H 1.08997 * 109.59648 * 72.59374 * 14 13 12 36 36 H 1.09002 * 109.37981 * 189.52099 * 15 14 13 37 37 H 1.09000 * 109.37549 * 69.86835 * 15 14 13 38 38 H 0.96999 * 118.53651 * 198.18339 * 16 15 14 39 39 H 1.08000 * 120.00697 * 0.02562 * 22 21 19 40 40 H 1.08011 * 119.99476 * 180.22919 * 23 22 21 41 41 H 1.07996 * 120.00325 * 179.72098 * 24 23 22 42 42 H 1.08000 * 120.00189 * 179.97438 * 25 24 23 43 43 H 1.07995 * 120.00719 * 0.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1514 -6.3078 -0.0005 13 7 2.6368 -7.6829 -0.0470 14 6 1.6800 -7.9251 1.0450 15 6 1.4158 -9.4289 1.1415 16 7 1.0783 -9.9632 -0.1747 17 6 1.3550 -9.3191 -1.3133 18 8 1.0674 -9.8494 -2.3655 19 6 2.0077 -7.9661 -1.3439 20 1 1.2553 -7.2061 -1.5547 21 6 3.0573 -7.9413 -2.4250 22 6 4.3062 -8.4844 -2.1883 23 6 5.2674 -8.4660 -3.1817 24 6 4.9831 -7.8952 -4.4082 25 6 3.7358 -7.3474 -4.6430 26 6 2.7729 -7.3704 -3.6514 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7314 0.8894 29 1 3.1245 -3.7313 -0.8906 30 1 1.3709 -5.4840 -0.8913 31 1 1.3705 -5.4847 0.8886 32 1 3.7403 -6.1706 0.9063 33 1 3.7793 -6.1252 -0.8727 34 1 2.0998 -7.5668 1.9849 35 1 0.7467 -7.4023 0.8360 36 1 0.5876 -9.6074 1.8274 37 1 2.3082 -9.9295 1.5170 38 1 0.6332 -10.8236 -0.2254 39 1 4.5298 -8.9268 -1.2288 40 1 6.2421 -8.8936 -2.9980 41 1 5.7354 -7.8768 -5.1827 42 1 3.5138 -6.9010 -5.6011 43 1 1.7987 -6.9418 -3.8347 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174171806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:19 Heat of formation + Delta-G solvation = -30.497674 kcal Electronic energy + Delta-G solvation = -24517.601268 eV Core-core repulsion = 21073.541457 eV Total energy + Delta-G solvation = -3444.059811 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93622 -39.70809 -38.79746 -36.26862 -34.62106 -34.05009 -32.43067 -31.75960 -29.92296 -28.43987 -27.72335 -25.45699 -24.49821 -23.39925 -22.56465 -22.33410 -19.92791 -19.46927 -18.39736 -18.10919 -17.74554 -16.90016 -16.85086 -16.46781 -16.22211 -15.99509 -15.74719 -15.34734 -15.25779 -15.02814 -14.59438 -14.39858 -14.21072 -13.84575 -13.61479 -13.43455 -13.31429 -13.16228 -12.91307 -12.79743 -12.70845 -12.51573 -12.33454 -11.94109 -11.91959 -11.61996 -11.57616 -11.13931 -11.08056 -10.37310 -10.10186 -9.78407 -9.65003 -9.49221 -8.67680 -8.38000 -6.14360 0.39698 0.54178 1.30966 1.40122 1.45690 1.47044 1.74844 2.24555 2.27997 2.62672 2.92660 2.96529 3.30466 3.50533 3.70459 3.83590 3.87377 3.98981 4.10739 4.16144 4.19763 4.21775 4.30848 4.39501 4.41994 4.61459 4.65986 4.67995 4.75342 4.82768 4.92121 4.98850 5.05527 5.07173 5.18348 5.25766 5.38914 5.54142 5.56454 5.63719 5.70050 5.82223 5.94277 6.11945 6.17186 6.20151 7.04464 7.11895 8.71072 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003293 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.612202 B = 8501.451966 C = 9669.834139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.017 3.983 3 Si 0.991 3.009 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.202 6.202 10 C -0.082 4.082 11 C -0.122 4.122 12 C 0.068 3.932 13 N -0.508 5.508 14 C 0.019 3.981 15 C 0.115 3.885 16 N -0.708 5.708 17 C 0.529 3.471 18 O -0.587 6.587 19 C 0.107 3.893 20 H 0.073 0.927 21 C -0.080 4.080 22 C -0.096 4.096 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.132 4.132 26 C -0.123 4.123 27 H 0.271 0.729 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.042 0.958 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.408 0.592 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.972 -20.741 1.233 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.027 5.973 10 C -0.232 4.232 11 C -0.162 4.162 12 C -0.061 4.061 13 N -0.232 5.232 14 C -0.109 4.109 15 C -0.008 4.008 16 N -0.360 5.360 17 C 0.315 3.685 18 O -0.467 6.467 19 C -0.005 4.005 20 H 0.090 0.910 21 C -0.081 4.081 22 C -0.114 4.114 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.150 4.150 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.091 0.909 34 H 0.142 0.858 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.245 0.755 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.035 -21.240 0.814 22.724 hybrid contribution 0.281 1.787 -0.354 1.844 sum 8.317 -19.453 0.460 21.161 Atomic orbital electron populations 1.70144 1.07702 1.28581 1.48026 1.26042 0.95981 1.03059 0.93732 0.85103 0.77984 0.76185 0.79406 1.19059 1.20042 1.18708 1.23004 0.94708 0.91996 1.58865 0.90906 1.84623 1.14331 1.01342 1.97048 1.23083 0.99990 0.97115 1.02986 1.21866 0.99585 0.92526 1.02175 1.22249 0.95618 0.84025 1.04243 1.62883 1.35137 1.24599 1.00599 1.22795 0.95215 0.96380 0.96486 1.21792 1.03323 0.92891 0.82815 1.45556 1.60256 1.23809 1.06339 1.20019 0.77676 0.87069 0.83755 1.90736 1.55363 1.67703 1.32930 1.20540 0.94817 0.93963 0.91147 0.90998 1.19260 0.94778 1.00432 0.93599 1.21139 0.92234 0.98131 0.99906 1.21482 1.00177 0.99812 0.93277 1.21499 0.96878 0.97528 0.98007 1.21346 0.93954 1.00313 0.99428 1.21169 0.99643 0.99539 0.93775 0.92000 0.91173 0.92577 0.93187 0.90602 0.87781 0.90905 0.85778 0.93956 0.86993 0.88889 0.75513 0.84615 0.83584 0.83707 0.84698 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.74 13.22 21.65 0.29 -54.46 16 2 C 0.02 0.95 5.49 84.86 0.47 1.42 16 3 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.54 -30.87 9.50 67.95 0.65 -30.23 16 8 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 9 S -0.20 -10.60 21.44 -56.49 -1.21 -11.81 16 10 C -0.08 -3.16 5.67 71.98 0.41 -2.75 16 11 C -0.12 -3.58 4.47 30.60 0.14 -3.44 16 12 C 0.07 1.53 5.16 86.31 0.44 1.97 16 13 N -0.51 -10.08 3.93 -879.86 -3.46 -13.54 16 14 C 0.02 0.28 4.59 86.25 0.40 0.68 16 15 C 0.12 1.23 7.39 86.47 0.64 1.87 16 16 N -0.71 -12.28 5.52 -466.07 -2.57 -14.85 16 17 C 0.53 13.75 7.36 87.68 0.65 14.40 16 18 O -0.59 -20.04 17.27 -3.03 -0.05 -20.09 16 19 C 0.11 2.69 1.98 43.29 0.09 2.77 16 20 H 0.07 2.06 6.12 -2.39 -0.01 2.04 16 21 C -0.08 -2.12 3.30 -19.87 -0.07 -2.18 16 22 C -0.10 -2.22 8.96 22.27 0.20 -2.02 16 23 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 24 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 25 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 26 C -0.12 -3.42 9.67 22.27 0.22 -3.20 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.07 2.58 8.14 -2.40 -0.02 2.56 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.05 1.63 6.43 -2.39 -0.02 1.61 16 31 H 0.08 2.14 6.73 -2.39 -0.02 2.13 16 32 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 1.82 6.83 -2.39 -0.02 1.81 16 34 H 0.12 1.39 8.06 -2.39 -0.02 1.37 16 35 H 0.04 0.78 7.00 -2.39 -0.02 0.76 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.41 5.92 8.84 -92.71 -0.82 5.10 16 39 H 0.14 2.82 7.71 -2.91 -0.02 2.80 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 43 H 0.11 3.15 8.03 -2.91 -0.02 3.13 16 Total: -1.00 -75.24 362.68 0.10 -75.14 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.20 Total: 22.28 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.89 Total: -28.35 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -5.75 Total: -82.85 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -10.60 SS G_CDS: -1.21 Total: -11.81 kcal Total: -75.24 0.10 -75.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174171806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.643 kcal (2) G-P(sol) polarization free energy of solvation -75.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds