Wall clock time and date at job start Tue Mar 31 2020 13:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48506 * 109.46810 * 270.00136 * 3 2 1 5 5 H 1.48503 * 109.46954 * 29.99514 * 3 2 1 6 6 H 1.48501 * 109.47286 * 149.99934 * 3 2 1 7 7 C 1.38659 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99696 * 359.97438 * 7 2 1 9 9 O 1.34832 * 120.00084 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99708 * 185.05464 * 9 7 2 11 11 C 1.38880 * 120.07217 * 354.46024 * 10 9 7 12 12 C 1.38098 * 119.93233 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06805 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.93112 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47407 * 89.99868 * 14 13 12 16 16 O 1.20832 * 119.99470 * 0.02562 * 15 14 13 17 17 O 1.34224 * 120.00291 * 180.02562 * 15 14 13 18 18 C 1.45202 * 117.00092 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47168 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.47420 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.82255 * 54.42784 * 20 19 18 22 22 C 1.54381 * 109.90730 * 175.36837 * 20 19 18 23 23 C 1.55303 * 102.25096 * 140.91066 * 22 20 19 24 24 C 1.54949 * 100.94452 * 325.86441 * 23 22 20 25 25 O 1.43246 * 109.82388 * 293.54894 * 20 19 18 26 26 C 1.38300 * 120.13812 * 0.27617 * 13 12 11 27 27 C 1.38097 * 120.07115 * 359.49128 * 26 13 12 28 28 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.03252 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.96590 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.47119 * 330.00161 * 14 13 12 32 32 H 1.08999 * 109.46959 * 210.00014 * 14 13 12 33 33 H 1.09004 * 109.46967 * 59.99929 * 18 17 15 34 34 H 1.09000 * 109.47321 * 299.99974 * 18 17 15 35 35 H 1.09004 * 109.47243 * 60.00088 * 19 18 17 36 36 H 1.09002 * 109.47492 * 300.00171 * 19 18 17 37 37 H 1.08992 * 110.84358 * 259.09995 * 22 20 19 38 38 H 1.09002 * 110.84705 * 22.52336 * 22 20 19 39 39 H 1.09005 * 111.12861 * 83.78300 * 23 22 20 40 40 H 1.09000 * 111.12465 * 207.90281 * 23 22 20 41 41 H 1.08998 * 110.31386 * 277.53010 * 24 23 22 42 42 H 1.09002 * 110.30651 * 155.35610 * 24 23 22 43 43 H 1.08000 * 119.96252 * 179.72208 * 26 13 12 44 44 H 1.08000 * 120.03821 * 180.25714 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9735 -2.4055 -0.1072 11 6 3.2235 -3.5744 -0.0951 12 6 3.8535 -4.7984 -0.2048 13 6 5.2296 -4.8610 -0.3271 14 6 5.9137 -6.1984 -0.4472 15 6 6.0191 -6.5801 -1.9013 16 8 5.5836 -5.8415 -2.7527 17 8 6.5965 -7.7403 -2.2505 18 6 6.6636 -8.0425 -3.6692 19 6 7.3491 -9.3954 -3.8705 20 6 7.4205 -9.7136 -5.3654 21 1 7.9042 -8.8930 -5.8953 22 6 8.2127 -11.0199 -5.5876 23 6 7.4104 -11.7018 -6.7292 24 6 5.9678 -11.2552 -6.3823 25 8 6.1000 -9.9148 -5.8828 26 6 5.9797 -3.6991 -0.3342 27 6 5.3553 -2.4718 -0.2297 28 1 -0.4850 0.8400 -0.0004 29 1 2.1488 -3.5260 -0.0009 30 1 3.2707 -5.7077 -0.1960 31 1 5.3338 -6.9523 0.0851 32 1 6.9123 -6.1358 -0.0148 33 1 7.2340 -7.2663 -4.1794 34 1 5.6550 -8.0819 -4.0804 35 1 6.7784 -10.1714 -3.3604 36 1 8.3578 -9.3565 -3.4592 37 1 9.2331 -10.8054 -5.9050 38 1 8.2093 -11.6336 -4.6868 39 1 7.7153 -11.3224 -7.7046 40 1 7.5081 -12.7864 -6.6843 41 1 5.5447 -11.9045 -5.6159 42 1 5.3433 -11.2661 -7.2757 43 1 7.0545 -3.7515 -0.4254 44 1 5.9412 -1.5646 -0.2395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177943599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:20 Heat of formation + Delta-G solvation = -143.955754 kcal Electronic energy + Delta-G solvation = -25426.384051 eV Core-core repulsion = 21502.358706 eV Total energy + Delta-G solvation = -3924.025345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44973 -39.87510 -39.09405 -37.07498 -36.18718 -33.32465 -32.55690 -32.46423 -31.63053 -30.24504 -28.44016 -26.99179 -25.04892 -23.88339 -22.20334 -22.08679 -21.37984 -21.22208 -20.06762 -17.89429 -17.54877 -17.51335 -17.26964 -16.47735 -16.42773 -16.06161 -15.00254 -14.83195 -14.70731 -14.36087 -14.00810 -13.98189 -13.77150 -13.60784 -13.44163 -13.23168 -12.71318 -12.58462 -12.27563 -12.20261 -12.07089 -11.98566 -11.70458 -11.55124 -11.40754 -11.32476 -11.30544 -10.95688 -10.76011 -10.67430 -10.51598 -10.24846 -10.14590 -9.93183 -9.37622 -8.85383 -8.24111 -7.32940 -6.40444 -4.06856 2.05005 2.15991 2.41733 2.83329 3.23514 3.27704 3.37932 3.41745 3.99059 4.23305 4.25105 4.37686 4.49866 4.64330 4.67697 4.72666 4.84891 4.85733 4.96326 5.11386 5.12975 5.19441 5.21036 5.21552 5.26169 5.28124 5.36791 5.46140 5.55333 5.58768 5.67079 5.71337 5.75649 5.79312 6.13648 6.32566 6.49882 6.58850 6.61275 6.79443 7.02321 7.20771 7.30144 7.61303 7.81374 7.95831 8.04800 8.94646 9.56639 10.67077 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.001950 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.503614 B =14353.850329 C =14814.124658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.216 6.216 10 C 0.164 3.836 11 C -0.220 4.220 12 C -0.055 4.055 13 C -0.174 4.174 14 C -0.052 4.052 15 C 0.454 3.546 16 O -0.490 6.490 17 O -0.367 6.367 18 C 0.069 3.931 19 C -0.127 4.127 20 C 0.081 3.919 21 H 0.084 0.916 22 C -0.150 4.150 23 C -0.157 4.157 24 C 0.048 3.952 25 O -0.376 6.376 26 C -0.059 4.059 27 C -0.192 4.192 28 H 0.279 0.721 29 H 0.134 0.866 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.423 -23.407 -8.211 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.112 3.888 11 C -0.239 4.239 12 C -0.073 4.073 13 C -0.175 4.175 14 C -0.089 4.089 15 C 0.296 3.704 16 O -0.376 6.376 17 O -0.285 6.285 18 C -0.005 4.005 19 C -0.165 4.165 20 C 0.024 3.976 21 H 0.102 0.898 22 C -0.187 4.187 23 C -0.195 4.195 24 C -0.028 4.028 25 O -0.296 6.296 26 C -0.077 4.077 27 C -0.211 4.211 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.997 -22.656 -8.481 29.565 hybrid contribution 0.196 0.498 -0.236 0.585 sum 17.193 -22.157 -8.717 29.369 Atomic orbital electron populations 1.69645 1.05566 1.28499 1.47910 1.24478 0.95043 0.98856 0.95649 0.86174 0.80307 0.81383 0.78990 1.19863 1.20777 1.18351 1.20783 0.76858 0.96679 1.52168 0.87569 1.83570 1.22672 1.25793 1.80030 1.19141 0.91724 0.85489 0.92437 1.21233 1.01131 0.91735 1.09805 1.20599 0.93158 0.96903 0.96659 1.18716 0.93716 0.92348 1.12716 1.20108 1.03313 0.96827 0.88661 1.24128 0.74458 0.78470 0.93353 1.90717 1.43465 1.50935 1.52441 1.86462 1.73413 1.40024 1.28602 1.22929 1.02281 0.96615 0.78675 1.21959 1.02026 0.96618 0.95907 1.22702 0.83752 0.97995 0.93181 0.89777 1.23160 1.00062 0.96033 0.99466 1.23276 0.95336 1.01583 0.99299 1.23404 0.96709 0.83849 0.98833 1.88500 1.30879 1.30211 1.79974 1.20425 0.98233 0.91318 0.97753 1.20154 0.91966 0.97744 1.11211 0.91040 0.84819 0.87313 0.87717 0.87746 0.91484 0.90568 0.90264 0.89786 0.89747 0.90053 0.90255 0.89797 0.92095 0.89609 0.87007 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.48 0.77 -24.90 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 21.99 28.62 -169.99 -4.86 17.13 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.39 -11.17 9.95 30.89 0.31 -10.86 16 8 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 9 O -0.22 -5.82 8.59 0.04 0.00 -5.82 16 10 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 11 C -0.22 -4.90 9.17 -39.40 -0.36 -5.27 16 12 C -0.05 -1.03 9.69 -39.61 -0.38 -1.42 16 13 C -0.17 -2.96 4.38 -104.58 -0.46 -3.42 16 14 C -0.05 -0.66 5.94 -29.04 -0.17 -0.83 16 15 C 0.45 6.74 7.95 36.00 0.29 7.02 16 16 O -0.49 -9.27 15.78 -18.75 -0.30 -9.57 16 17 O -0.37 -4.67 10.22 -39.24 -0.40 -5.07 16 18 C 0.07 0.78 5.38 37.16 0.20 0.98 16 19 C -0.13 -1.02 5.17 -26.73 -0.14 -1.16 16 20 C 0.08 0.61 3.51 -26.01 -0.09 0.52 16 21 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.15 -0.74 6.55 -24.79 -0.16 -0.90 16 23 C -0.16 -0.74 7.16 -24.48 -0.18 -0.91 16 24 C 0.05 0.32 7.78 38.19 0.30 0.62 16 25 O -0.38 -3.68 10.63 -35.23 -0.37 -4.06 16 26 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 27 C -0.19 -3.92 9.99 -39.39 -0.39 -4.31 16 28 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.13 3.11 5.64 -52.49 -0.30 2.81 16 30 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.35 7.85 -51.93 -0.41 -0.05 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -33.34 372.28 -7.98 -41.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.45 Total: 1.36 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -1.99 Total: -16.01 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.77 Total: -24.90 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.07 Total: -24.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.34 -7.98 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177943599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.630 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds